Estimation of surface chlorophyll‐a on an emersed mudflat using field spectrometry: accuracy of ratios and derivative‐based approaches

References

• Asrar G 1989 Theory and Applications of Optical Remote Sensing Chichester John Wiley
   Google Scholar
• Benedict , HM and Swidler , R . 1961 . Nondestructive method for estimating chlorophyll content of leaves. . Science , 133 : 2015 – 2016 .
   PubMed Web of Science ®Google Scholar
• Bidigare , RR , Ondrusek , ME , Morrow , JH and Kiefer , DA . 1990 . In vivo absorption properties of algal pigments. . Proceedings of SPIE , 1302 : 290 – 302 .
   Google Scholar
• Black , KS , Tolhurst , TJ , Hagerthey , SE and Paterson , DM . 2002 . Working with natural cohesive sediments. . Journal of Hydraulic Engineering , 128 : 1 – 7 .
   Web of Science ®Google Scholar
• Blackburn , GA . 1999 . Relationships between spectral reflectance and pigment concentrations in stacks of deciduous broadleaves. . Remote Sensing of Environment , 70 : 224 – 237 .
   Web of Science ®Google Scholar
• Broge , NH and Leblanc , E . 2000 . Comparing prediction power and stability of broadband and hyperspectral vegetation indices for estimation of green leaf index and canopy chlorophyll density. . Remote Sensing of Environment , 76 : 156 – 172 .
   Web of Science ®Google Scholar
• Bryant , RG , Tyler , AN , Gilvear , DJ , McDonald , P , Teasdale , I and Ferrier , G . 1996 . A preliminary investigation into the VNIR spectral characteristics of inter‐tidal estuarine sediments. . International Journal of Remote Sensing , 17 : 405 – 412 .
   Web of Science ®Google Scholar
• Buschmann , C and Nagel , E . 1993 . In vivo spectroscopy of internal optics of leaves as basis for remote sensing of vegetation. . International Journal of Remote Sensing , 14 : 711 – 722 .
   Web of Science ®Google Scholar
• Cadee , GC and Hegeman , J . 1974 . Primary production of the benthic microflora living on tidal flats in the Dutch Wadden Sea. . Netherland Journal of Sea Research , 8 : 260 – 291 .
   Google Scholar
• Chapman , MG and Tolhurst , TJ . 2004 . The relationship between invertebrate assemblages and bio‐dependent properties of sediment in urbanized temperate mangrove forests. . Journal of Experimental Marine Biology and Ecology , 304 : 51 – 73 .
   Web of Science ®Google Scholar
• Chatterjee S Price B 1991 Regression Analysis by Example 2nd edn New York John Wiley
   Google Scholar
• Clark , RN and Roush . 1984 . Reflectance spectroscopy: quantitative analysis of techniques for remote sensing applications. . Journal of Geophysical Research , 89 : 6329 – 6340 .
   Web of Science ®Google Scholar
• Collins , W . 1978 . Remote sensing of crop type and maturity. . Photogrammetric Engineering and Remote Sensing , 26 : 43 – 55 .
   Google Scholar
• Curran , P , Windham , WR and Gholz , HL . 1995 . Exploring the relationship between reflectance red edge and chlorophyll‐a concentration in slash pine leaves. . Tree Physiology , 15 : 203 – 206 .
   PubMed Web of Science ®Google Scholar
• Datt , B . 1998 . Remote sensing of chlorophyll‐a a, chlorophyll‐a b, chlorophyll‐a a+b, and total carotenoid content in eucalyptus leaves. . Remote Sensing of Environment , 66 : 111 – 121 .
   Web of Science ®Google Scholar
• Daughtry , CST , Walthall , CL , Kim , MS , De Colstoun , EB and McMurtrey , JE . 2000 . Estimating corn leaf chlorophyll‐a concentration from leaf and canopy reflectance. . Remote Sensing of Environment , 74 : 229 – 239 .
   Web of Science ®Google Scholar
• De Brouwer , JFC , Bjelic , S , De Deckere , EMGT and Stal , LJ . 2000 . Interplay between biology and sedimentology in a mudflat (Biezelingse Ham, Westerschelde, The Netherlands). . Continental Shelf Research , 20 : 1159 – 1177 .
   Web of Science ®Google Scholar
• Decho , AW , Kawaguchi , T , Allison , M , Louchard , EM , Reid , RP , Stephens , FC , Voss , KJ , Wheatcroft , RA and Taylor , BB . 2003 . Sediment properties influencing upwelling spectral reflectance signatures: the ‘biofilm gel effect’. . Limnology and Oceanography , 48 : 431 – 443 .
   Web of Science ®Google Scholar
• Defew , EC , Tolhurst , TJ and Paterson , DM . 2002 . Site‐specific features influence sediment stability of intertidal flats. . Hydrology and Earth System Sciences , 6 : 971 – 981 .
   Web of Science ®Google Scholar
• Demetriades‐Shah , TH , Steven , MD and Clark , JA . 1990 . High resolution derivative spectra in remote sensing. . Remote Sensing of Environment , 33 : 55 – 64 .
   Web of Science ®Google Scholar
• Elvidge , CD and Chen , Z . 1995 . Comparison of broad‐band and narrow‐band red and near‐infrared vegetation indices. . Remote Sensing of Environment , 54 : 38 – 48 .
   Web of Science ®Google Scholar
• Elvidge CD Lyon RJP Influence of background albedo on vegetation indices employing red and near‐infrared. 1984 Proceedings of the Seminar on Remote Sensing for Geologic Mapping, IUGS‐UNESCO Programme on Geological Applications of Remote Sensing 2–4 February 1984 Orleans UNESCO 11
   Google Scholar
• Filella , I and Peñuelas , J . 1994 . The red edge position and shape as indicators of plant chlorophyll content, biomass and hydric status. . International Journal of Remote Sensing , 15 : 1459 – 1470 .
   Web of Science ®Google Scholar
• Friend , PL , Collins , MB and Holligan , PM . 2003 . Day‐night variation of intertidal flat sediment properties related to sediment stability. . Estuarine, Coastal and Shelf Science , 58 : 663 – 675 .
   Web of Science ®Google Scholar
• Gates , DM , Keegan , HJ , Schleter , JC and Weidner , VR . 1965 . Spectral properties of plants. . Applied Optics , 4 : 11 – 20 .
   Web of Science ®Google Scholar
• Gitelson , A and Merzlyak , MN . 1994 . Spectral reflectance changes associated with autumn senescence of Aesculus hippocastanum L. and Acer platanoides L. leaves. . Journal of Plant Physiology , 143 : 286 – 292 .
   Web of Science ®Google Scholar
• Gitelson , A , Garbuzov , G , Szilagyi , F , Mittenzwey , K‐H , Karnieli , A and Kaiser , A . 1993 . Quantitative remote sensing methods for real‐time monitoring of inland waters quality. . International Journal of Remote Sensing , 14 : 1269 – 1295 .
   Web of Science ®Google Scholar
• Gitelson , AA , Kaufman , YJ and Merzlyak , MN . 1996 . Use of a green channel in remote sensing of global vegetation from EOS‐MODIS. . Remote Sensing of Environment , 58 : 289 – 298 .
   Web of Science ®Google Scholar
• Goodin , DG , Han , L , Fraser , RN , Rundquist , D and Stebbins , WA . 1993 . Analysis of suspended solids in water using remotely sensed high resolution derivative spectra. . Photogrammetric Engineering and Remote Sensing , 59 : 505 – 510 .
   Web of Science ®Google Scholar
• Guillaumont B Gentian P Viollier M Mesures radiometriques haute resolution du microphytobenthos intertidal. 1988 4th International Colloquium on Spectral Signatures of Objects in Remote Sensing Aussois, France, ESA SP‐287 333 336
   Google Scholar
• Hagerthey SE Paterson DM Kromkamp J Monitoring estuarine ecosystems: the Eden Estuary and the BIOPTIS programme. 2003 In: Coastal Zone Topics, 5. The estuaries and coasts of north‐east Scotland Aberdeen Estuarine and Coastal Sciences Association 89 97
   Google Scholar
• Hakvoort , JHM , Heineke , M , Heyman , K , Kuhl , H , Riethmüller , R and Witte , G . 1998 . A basis for mapping the erodibility of tidal flats by optical remote sensing. . Marine and Freshwater Research , 49 : 867 – 873 .
   Web of Science ®Google Scholar
• Han , L and Rundquist , DC . 1997 . Comparison of NIR/red ratio and first derivative of reflectance in estimating algal‐chlorophyll concentration: a case study in a turbid reservoir. . Remote Sensing of Environment , 62 : 253 – 261 .
   Web of Science ®Google Scholar
• Hapke , B . 1981 . Bidirectional reflectance spectroscopy, 1. Theory. . Journal of Geophysical Research , 86 : 3039 – 3054 .
   Web of Science ®Google Scholar
• Hildebrand FB 1974 Introduction to Numerical Analysis New York McGraw‐Hill
   Google Scholar
• Hoepffner , N and Sathyendranath , S . 1991 . Effect of pigment composition on absorption properties of phytoplankton. . Marine Ecology Progress Series , 73 : 11 – 23 .
   Web of Science ®Google Scholar
• Honeywill , HG , Paterson , DM and Hagerthey , SE . 2002 . Determination of microphytobenthic biomass using pulse modulated minimum fluorescence. . European Journal of Phycology , 37 : 1 – 8 .
   Web of Science ®Google Scholar
• Horler , DNH , Dockray , M and Barber , J . 1983 . The red edge of plant leaf reflectance. . International Journal of Remote Sensing , 4 : 273 – 288 .
   Web of Science ®Google Scholar
• Huete , AR . 1988 . A soil adjusted vegetation index (SAVI). . Remote Sensing of Environment , 25 : 295 – 309 .
   Web of Science ®Google Scholar
• Huete , AR and Jackson , RD . 1988 . Soil and atmospheric influences on the spectra of partial canopies. . Remote Sensing of Environment , 25 : 89 – 105 .
   Web of Science ®Google Scholar
• Huete , AR , Jackson , RD and Post , DF . 1985 . Spectral response of a plant canopy with different soil backgrounds. . Remote Sensing of Environment , 25 : 89 – 105 .
   Web of Science ®Google Scholar
• Huitema BE 1980 The Analysis of Covariance and Alternatives New York John Wiley
   Google Scholar
• Jassby , AD , Cloern , JE and Powell , TM . 1993 . Organic carbon sources and sinks in San Francisco Bay: variability induced by river flow. . Marine Ecology Progress Series , 95 : 39 – 54 .
   Web of Science ®Google Scholar
• Joint IR Microbial production of an estuarine mudflat. 1978 Estuarine and Coastal Marine Science 7 185 195
   Google Scholar
• Jordan , CF . 1969 . Determination of leaf area index from quality of light on the forest floor. . Ecology , 50 : 663 – 666 .
   Web of Science ®Google Scholar
• Kirk JTO 1983 Light and Photosynthesis in Aquatic Ecosystems 1st edn Melbourne Cambridge University Press
   Google Scholar
• Knipling , EB . 1970 . Physical and physiological basis for the reflectance of visible and near‐infrared radiation from vegetation. . Remote Sensing of Environment , 1 : 155 – 159 .
   Google Scholar
• Kühl , M and Jørgensen , BB . 1994 . The light field of microbenthic communities: radiance distribution and microscale optics of sandy coastal sediments. . Limnology and Oceanography , 39 : 1368 – 1398 .
   Web of Science ®Google Scholar
• Lichtenthaler , HK , Gitelson , A and Lang , M . 1996 . Non‐destructive determination of chlorophyll content of leaves of a green and an aurea mutant of tobacco by reflectance measurements. . Journal of Plant Physiology , 148 : 483 – 193 .
   Web of Science ®Google Scholar
• MacIntyre , HL and Cullen , JJ . 1996 . Primary production by suspended and benthic microalgae in a turbid estuary: time‐scales of variability in San Antonio Bay, Texas. . Marine Ecology Progress Series , 145 : 245 – 268 .
   Web of Science ®Google Scholar
• Malthus , TJ and Dekker , AG . 1995 . First derivative indices for the remote sensing of inland water quality using high spectral resolution reflectance. . Environment International , 21 : 221 – 232 .
   Web of Science ®Google Scholar
• Meleder , V , Barille , L , Launeau , P , Carrare , V and Rince , Y . 2003 . Spectrometric constraint in analysis of benthic diatom biomass using monospecific cultures. . Remote Sensing of Environment , 88 : 386 – 400 .
   Web of Science ®Google Scholar
• Moss DM Rock BN Analysis of red edge spectral characteristics and total chlorophyll‐a values for red spruce (Picea rubens) branch segements from Mt. Moosilauke, NH, USA. 1991 Proceedings of the 11th Annual IGARSS '91 Symposium Helsinki, Finland, 3–6 June 1991, vol. 3 Washington DC IEEE 1529 1532
   Google Scholar
• Murphy , RJ , Tolhurst , TJ , Chapman , MG and Underwood , AJ . 2004 . Estimation of surface chlorophyll on an exposed mudflat using digital colour‐infrared photography. . Estuarine, Coastal and Shelf Science , 59 : 625 – 638 .
   Web of Science ®Google Scholar
• Murray I Jessiman C Keley H Use of NIR reflectance (NIR) spectrocomputer for forage evaluation. 1981 Proceedings of the 12th Annual Meeting of the European Society of Nuclear Methods in Agriculture 28 September–3 October 1981, Aberdeen
   Google Scholar
• Mustard , JF and Pieters , CM . 1987 . Quantitative abundance estimates from bidirectional reflectance measurements. . Journal of Geophysical Research , 92 : 617 – 626 .
   Web of Science ®Google Scholar
• Paterson , DM , Tolhurst , TJ , Kelly , JA , Honeywill , C , De Deckere , EMGT , Huet , V , Shayler , SA , Black , KS , De Brouwer , J and Davidson , I . 2000 . Variations in sediment stability and sediment properties across the Skeffling mudflat, Humber Estuary, UK. . Continental Shelf Research , 20 : 1373 – 1396 .
   Web of Science ®Google Scholar
• Peñuelas , J , Gamon , JA , Griffin , KL and Field , CB . 1993 . Assessing community type, plant biomass, pigment composition, and photosynthetic efficiency of aquatic vegetation from spectral reflectance. . Remote Sensing of Environment , 46 : 110 – 118 .
   Web of Science ®Google Scholar
• Pope , RM and Fry , ES . 1997 . Absorption spectrum (380–700 nm) of pure water. II. Integrating cavity measurements. . Applied Optics , 36 : 8710 – 8723 .
   PubMed Web of Science ®Google Scholar
• Porra , RJ , Thompson , WA and Kriedman , PE . 1989 . Determination of accurate extinction coefficients and simultaneous equations for assaying chlorophylls a and b extracted with four different solvents: verification of the concentration of chlorophyll standards by atomic absorption spectroscopy. . Biochimica et Biophysica Acta , 975 : 384 – 394 .
   Web of Science ®Google Scholar
• Rainey , MP , Tyler , AN , Bryan , RG and Gilvear , DJ . 2000 . The influence of surface and interstitial moisture on the spectral characteristics of intertidal sediments: implications for airborne image acquisition and processing. . International Journal of Remote Sensing , 21 : 3025 – 3038 .
   Web of Science ®Google Scholar
• Riethmüller R Hakvoort JHM Heineke M Heymann K Kuhl H Witte G Relating erosion shear stress to tidal flat surface colour. 1998 In: Sedimentary Processes in the Intertidal Zone edited by Black K. S, Paterson D. M, Cramp A, eds. Special Publication, 139 London Geological Society 283 293
   Google Scholar
• Rizzo , WM , Lackey , GL and Christian , RR . 1992 . Significance of euphotic, subtidal sediments to oxygen and nutrient cycling in a temperate estuary. . Marine Ecology Progress Series , 86 : 51 – 61 .
   Web of Science ®Google Scholar
• Roberts , DS , Smith , MO and Adams , JB . 1993 . Green vegetation, nonphotosynthetic vegetation and soils in AVIRIS data. . Remote Sensing of Environment , 44 : 255 – 269 .
   Web of Science ®Google Scholar
• Rock , BN , Hoshizaki , T and Miller , JR . 1988 . Comparison of in situ and airborne measurements of the blue shift associated with forest decline. . Remote Sensing of Environment , 24 : 109 – 127 .
   Web of Science ®Google Scholar
• Roelfsema , CM , Phinn , SR and Dennison , WC . 2002 . Spatial distribution of benthic microalgae on coral reefs determined by remote sensing. . Coral Reefs , 21 : 264 – 274 .
   Web of Science ®Google Scholar
• Rouse JW Haas RH Schell JA Deering DW Monitoring vegetation systems in the Great Plains with ERTS. 1973 Proceedings of the Third ERTS Symposium NASA, SP‐351, December 1973, vol. 1 Washington DC NASA 309 317
   Google Scholar
• Rundquist , DC , Han , L , Schalles , JF and Peake , JS . 1996 . Remote measurement of algal chlorophyll in surface waters: the case for the first derivative of reflectance near 690 nm. . Photogrammetric Engineering and Remote Sensing , 62 : 195 – 200 .
   Web of Science ®Google Scholar
• Schalles , JF , Gitelson , AA , Yacobi , YZ and Kroenke , AE . 1998 . Estimation of chlorophyll a from time series measurements of high spectral resolution reflectance in an eutrophic lake. . Journal of Phycology , 34 : 383 – 390 .
   Web of Science ®Google Scholar
• Singer RB McCord TB Mars: large scale mixing of bright and dark surface materials and implications for analysis of spectral reflectance. 1979 Proceedings of the 10th Lunar and Planetary Science Conference Houston, Texas, 19–23 March 1979 (New York: Pergamon Press) 1835 1848
   Google Scholar
• Smith , DJ and Underwood , GJC . 1998 . Exopolymer production by intertidal epipelic diatoms. . Limnology and Oceanography , 43 : 1578 – 1591 .
   Web of Science ®Google Scholar
• Stephens , FC , Louchard , EM , Reid , RP and Maffione , RA . 2003 . Effects of microalgal communities on reflectance spectra of carbonate sediments in subtidal optically shallow marine environments. . Limnology and Oceanography , 48 (1 part 2) : 535 – 546 .
   Web of Science ®Google Scholar
• Thomas , JR and Gausman , HW . 1977 . Leaf reflectance vs. leaf chlorophyll and carotenoid concentrations for eight crops. . Agronomy Journal , 69 : 799 – 802 .
   Web of Science ®Google Scholar
• Tolhurst , TJ , Jesus , B , Brotas , V and Paterson , DM . 2003 . Diatom migration and sediment armouring—an example from the Tagus Estuary, Portugal. . Hydrobiologia , 503 : 183 – 193 .
   Web of Science ®Google Scholar
• Tolhurst , TJ , Gust , G and Paterson , DM . 2002 . The influence of extracellular polymeric substance (EPS) on cohesive sediment stability. . Proceedings of Marine Science , 5 : 409 – 425 .
   Google Scholar
• Tucker , CJ . 1979 . Red and photographic infrared linear combinations for monitoring vegetation. . Remote Sensing of Environment , 8 : 127 – 150 .
   Web of Science ®Google Scholar
• Underwood , GJC and Kromkamp , J . 1999 . Primary production by phytoplankton and microphytobenthos in estuaries. . Advances in Ecological Research , 29 : 93 – 153 .
   Web of Science ®Google Scholar
• Underwood , GJC and Paterson , DM . 1993 . Recovery of intertidal benthic diatoms after biocide treatment and associated sediment dynamics. . Journal of the Marine Biological Association, UK , 73 : 25 – 45 .
   Web of Science ®Google Scholar
• Uno S Gotoh K Some examples of environmental monitoring in coastal area by remote sensing techniques. 1992 Presented at the First Thematic Conference on Remote Sensing for Marine and Coastal Environments 15–17 June 1992, New Orleans, Louisiana, USA
   Google Scholar
• Viollier M Belsher T Loubersac L Signatures spectrales des objets du littoral. 1985 Proceedings of the 3rd International Colloquium Spectral Signatures of Objects in Remote Sensing 16–20 December 1985 SP‐247 Les Arcs ESA 253 256
   Google Scholar
• Vogelmann , JE , Rock , BN and Moss , DM . 1993 . Red edge spectral reflectance from sugar maple leaves. . International Journal of Remote Sensing , 14 : 1563 – 1575 .
   Web of Science ®Google Scholar
• Wentworth , CR . 1922 . A scale of grade and class terms for clastic sediments. . Journal of Geology , 30 : 377 – 392 .
   Google Scholar
• Yallop , ML , De Winter , B , Paterson , DM and Stal , LJ . 1994 . Comparative structure, primary production and biogenic stabilization of cohesive and non‐cohesive marine sediments inhabited by microphytobenthos. . Estuarine, Coastal and Shelf Science , 39 : 565 – 582 .
   Web of Science ®Google Scholar
• Zarco‐Tejada , PJ , Pushnik , JC , Dobrowski , S and Ustin , SL . 2003 . Steady‐state chlorophyll a fluorescence detection from canopy derivative reflectance and double‐peak red‐edge effects. . Remote Sensing of Environment , 84 : 283 – 294 .
   Web of Science ®Google Scholar
• Zbinden RM Les réflectances de sediments d'estran: résultats de mesure in‐situ et d'une simulation SPOT en Baie du Mont Saint‐Michel. 1985 Proceedings of the 3rd International Colloquium Spectral Signatures of Objects in Remote Sensing 16–20 December 1985, SP‐247 Les Arcs ESA 257 263
   Google Scholar