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Articles

Retrieving understorey dynamics in the Australian tropical savannah from time series decomposition and linear unmixing of MODIS data

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Pages 1445-1475 | Received 31 Jul 2015, Accepted 06 Feb 2016, Published online: 02 Mar 2016

References

  • ABARES. 2013. Australian Ground Cover Reference Sites Database. Canberra, Australia: Australian Bureau of Agricultural and Resource Economics and Sciences. http://rs.nci.org.au/FcSiteData/.
  • Apan, A., A. Held, S. Phinn, and J. Markley. 2004. “Detecting Sugarcane ‘Orange Rust’ Disease Using EO-1 Hyperion Hyperspectral Imagery.” International Journal of Remote Sensing 25: 489–498. doi:10.1080/01431160310001618031.
  • Archibald, S., and R. J. Scholes. 2007. “Leaf Green-Up in a Semi-Arid African Savanna – Separating Tree and Grass Responses to Environmental Cues.” Journal of Vegetation Science 18: 583–594.
  • Augustine, D. J. 2003. “Spatial Heterogeneity in the Herbaceous Layer of a Semi-Arid Savanna Ecosystem.” Plant Ecology 167: 319–332. doi:10.1023/A:1023927512590.
  • Bastin, G. N., and J. A. Ludwig. 2006. “Problems and Prospects for Mapping Vegetation Condition in Australia’s Arid Rangelands.” Ecological Management & Restoration 7 (Issue Supplement): S71–S74. doi:10.1111/j.1442-8903.2006.293_4.x.
  • Bastin, G. N., J. A. Ludwig, R. W. Eager, V. H. Chewings, and A. C. Liedloff. 2002. “Indicators of Landscape Function: Comparing Patchiness Metrics Using Remotely-Sensed Data from Rangelands.” Ecological Indicators 1: 247–260. doi:10.1016/S1470-160X(02)00009-2.
  • Beringer, J., L. B. Hutley, D. Abramson, S. K. Arndt, P. Briggs, M. Bristow, J. G. Canadell, et al. 2015. “Fire in Australian Savannas: From Leaf to Landscape.” Global Change Biology 21: 62–81. doi:10.1111/gcb.2014.21.issue-1.
  • Bond, W. J., F. I. Woodward, and G. F. Midgley. 2005. “The Global Distribution of Ecosystems in a World without Fire.” New Phytologist 165: 525–538. doi:10.1111/j.1469-8137.2004.01252.x.
  • Booth, D. T., and P. T. Tueller. 2003. “Rangeland Monitoring Using Remote Sensing.” Arid Land Research and Management 17: 455–467. doi:10.1080/713936105.
  • Chidumayo, E. N. 2002. “Changes in Miombo Woodland Structure under Different Land Tenure and Use Systems in Central Zambia.” Journal of Biogeography 29: 1619–1626. doi:10.1046/j.1365-2699.2002.00794.x.
  • Cleveland, R. B., W. S. Cleveland, J. E. McRae, and I. Terpenning. 1990. “STL: A Seasonal-Trend Decomposition Procedure Based on Loess.” Journal of Official Statistics 6: 3–73.
  • Crist, E. P., and R. C. Cicone. 1984. “A Physically-Based Transformation of Thematic Mapper Data—The TM Tasseled Cap.” IEEE Transactions On Geoscience and Remote Sensing GE–22: 256–263. doi:10.1109/TGRS.1984.350619.
  • Crist, E. P., and R. J. Kauth. 1986. “The Tasseled Cap De-Mystified.” Photogrammetric Engineering and Remote Sensing 52: 81–86.
  • Damascos, M. A., C. H. B. A. Prado, and C. C. Ronquim. 2005. “Bud Composition, Branching Patterns and Leaf Phenology in Cerrado Woody Species.” Annals of Botany 96: 1075–1084. doi:10.1093/aob/mci258.
  • Datt, B., and D. L. B. Jupp. 2004. Hyperion Data Processing Workshop: Hands-On Processing Instructions. Canberra: CSIRO.
  • Datt, B., T. R. McVicar, T. G. Van Niel, D. L. B. Jupp, and J. S. Pearlman. 2003. “Preprocessing EO-1 Hyperion Hyperspectral Data to Support the Application of Agricultural Indexes.” IEEE Transactions on Geoscience and Remote Sensing 41: 1246–1259. doi:10.1109/TGRS.2003.813206.
  • Daughtry, C. S. T. 2001. “Discriminating Crop Residues from Soil by Shortwave Infrared Reflectance.” Agronomy Journal 93: 125–131. doi:10.2134/agronj2001.931125x.
  • Daughtry, C. S., P. C. Doraiswamy, E. R. Hunt, A. J. Stern, J. E. McMurtrey, and J. H. Prueger. 2006. “Remote Sensing of Crop Residue Cover and Soil Tillage Intensity.” Soil and Tillage Research 91: 101–108. doi:10.1016/j.still.2005.11.013.
  • de Bie, S., P. Ketner, M. Paasse, and C. Geerling. 1998. “Woody Plant Phenology in the West Africa Savanna.” Journal of Biogeography 25: 883–900. doi:10.1046/j.1365-2699.1998.00229.x.
  • Donzelli, D., C. De Michele, and R. J. Scholes. 2013. “Competition between Trees and Grasses for Both Soil Water and Mineral Nitrogen in Dry Savannas.” Journal of Theoretical Biology 332: 181–190. doi:10.1016/j.jtbi.2013.04.003.
  • Eamus, D. 1999. “Ecophysiological Traits of Deciduous and Evergreen Woody Species in the Seasonally Dry Tropics.” Tree 14: 11–16.
  • February, E. C., S. I. Higgins, W. J. Bond, and L. Swemmer. 2013. “Influence of Competition and Rainfall Manipulation on the Growth Responses of Savanna Trees and Grasses.” Ecology 94: 1155–1164. doi:10.1890/12-0540.1.
  • Fox, I. D., V. J. Neldner, G. W. Wilson, and P. J. Bannink. 2001. The Vegetation of the Australian Tropical Savannas, 328. Brisbane: Environmental Protection Agency.
  • Fuller, D. O. 1999. “Canopy Phenology of Some Mopane and Miombo Woodlands in Eastern Zambia.” Global Ecology and Biogeography 8: 199–209. doi:10.1046/j.1365-2699.1999.00130.x.
  • Gessner, U., M. Machwitz, C. Conrad, and S. Dech. 2013. “Estimating the Fractional Cover of Growth Forms and Bare Surface in Savannas. A Multi-Resolution Approach Based on Regression Tree Ensembles.” Remote Sensing of Environment 129: 90–102. doi:10.1016/j.rse.2012.10.026.
  • Grace, J., J. S. José, P. Meir, H. S. Miranda, and R. A. Montes. 2006. “Productivity and Carbon Fluxes of Tropical Savannas.” Journal of Biogeography 33: 387–400. doi:10.1111/j.1365-2699.2005.01448.x.
  • Guan, K., E. Wood, and K. Caylor. 2012. “Multi-Sensor Derivation of Regional Vegetation Fractional Cover in Africa.” Remote Sensing of Environment 124: 653–665. doi:10.1016/j.rse.2012.06.005.
  • Guerschman, J., P. Scarth, T. R. McVicar, T. J. Malthus, J. B. Stewart, J. E. Rickards, and L. J. Renzullo. 2015. “Assessing the Effects of Site Heterogeneity and Soil Properties When Unmixing Photosynthetic Vegetation, Non-Photosynthetic Vegetation and Bare Soil Fractions from Landsat and MODIS Data.” Remote Sensing of Environment 161: 12–26. doi:10.1016/j.rse.2015.01.021.
  • Guerschman, J. P., M. J. Hill, L. J. Renzullo, D. J. Barrett, A. S. Marks, and E. J. Botha. 2009. “Estimating Fractional Cover of Photosynthetic Vegetation, Non-Photosynthetic Vegetation and Bare Soil in the Australian Tropical Savanna Region Upscaling the EO-1 Hyperion and MODIS Sensors.” Remote Sensing of Environment 113: 928–945. doi:10.1016/j.rse.2009.01.006.
  • Guerschman, J. P., M. Oyarzabal, T. Malthus, T. R. McVicar, G. Byrne, L. A. Randall, and J. B. Stewart. 2012. Evaluation of the MODIS-Based Vegetation Fractional Cover Product. Report No. EP11631. Canberra: CSIRO. http://www.clw.csiro.au/publications/science/2012/SAF-MODIS-fractional-cover.pdf.
  • Hanan, N. P., and M. J. Hill. 2012. Savannas in a Changing Earth System. The NASA Terrestrial Ecology Tree-Grass Project: Outline for a Coordinated NASA Field Campaign for Earth Observation and Modeling in Mixed Tree-Grass Ecosystems. Final Report to NASA Terrstrial Ecology Program, Contract NNX09AH56G, 56 pp.
  • Hanan, N. P., and C. E. Lehmann. 2011. “Tree-Grass Interactions in Savannas: Paradigms, Contradictions, and Conceptual Models.” In Ecosystem Function in Savannas: Measurement and Modeling at Landscape to Global Scales, edited by M. J. Hill, and N. P. Hanan, 39–53. Boca Raton, Florida: CRC Press.
  • Higgins, S. I., W. J. Bond, E. C. February, A. Bronn, D. I. W. Euston-Brown, B. Enslin, N. Govender, et al. 2007. “Effects of Four Decades of Fire Manipulation on Woody Vegetation Structure in Savanna.” Ecology 88: 1119–1125. doi:10.1890/06-1664.
  • Higgins, S. I., M. D. Delgado-Cartay, E. C. February, and H. J. Combrink. 2011. “Is There a Temporal Niche Separation in the Leaf Phenology of Savanna Trees and Grasses?” Journal of Biogeography 38: 2165–2175. doi:10.1111/jbi.2011.38.issue-11.
  • Hill, M. J., N. P. Hanan, W. Hoffmann, R. Scholes, S. Prince, J. Ferwerda, R. M. Lucas, et al. 2011. “Remote Sensing and Modeling of Savannas: The State of the Dis-Union.” In Proceedings of the 34th International Symposium on Remote Sensing of Environment, 6. Sydney, April 10–15. http://catalogue.nla.gov.au/Record/5177319.
  • Hill, M. J., M. O. Roman, and C. B. Schaaf. 2012. “Biogeography, Ecology and Dynamics of Global Savannas: A Spatio-Temporal View.” In Ecosystem Function in Savannas: Measurement and Modeling at Landscape to Global Scales, edited by M. J. Hill, and N. P. Hanan, 3–37. Boca Raton, Florida: CRC Press.
  • Hill, M. J., M. O. Román, and C. B. Schaaf. 2012. “Dynamics of Vegetation Indices in Tropical and Subtropical Savannas Defined by Ecoregions and Moderate Resolution Imaging Spectroradiometer (MODIS) Land Cover.” Geocarto International 27: 153–191. doi:10.1080/10106049.2011.626529.
  • Horne, J. H. 2003. “A Tasseled Cap Transformation for IKONOS Images.” In ASPRS 2003 Annual Conference Proceedings, Anchorage, AK, 60–70.
  • Johansen, K., T. Gill, R. Trevithick, J. Armston, P. Scarth, N. Flood, and S. Phinn. 2012. “Landsat based Persistent Green-Vegetation Fraction for Australia.” In Proceedings of the 16th Australasian Remote Sensing and Photogrammery Conference. Melbourne, Australia.
  • Jupp, D. L. B., B. Datt, J. Lovell, S. Campbell, and E. A. King. 2002. “Discussions around Hyperion Data: Background Notes for the Hyperion Data Users Workshop.” Canberra.
  • Karl, J. W., J. K. Gillan, N. N. Barger, J. E. Herrick, and M. C. Duniway. 2014. “Interpretation of High-Resolution Imagery for Detecting Vegetation Cover Composition Change after Fuels Reduction Treatments in Woodlands.” Ecological Indicators 45: 570–578. doi:10.1016/j.ecolind.2014.05.017.
  • Kauth, R. J., and G. S. Thomas. 1976. “The Tasselled Cap–A Graphic Description of the Spectral-Temporal Development of Agricultural Crops as Seen by Landsat.” In Proceedings of the Symposium on Machine Processing of Remotely Sensed Data, 4B–41 to 4B–51. Laboratory for Applications of Remote Sensing, Indiana: Purdue University of West Lafayette.
  • Legendre, P. 2008. “Model II Regression User’s Guide, R Edition.” In A Tutorial within R Session, R Package Lmodel2, 14 https://cran.r-project.org/web/packages/lmodel2/index.html.
  • Lu, H., M. R. Raupach, T. R. McVicar, and D. J. Barrett. 2003. “Decomposition of Vegetation Cover into Woody and Herbaceous Components Using AVHRR NDVI Time Series.” Remote Sensing of Environment 86: 1–18. doi:10.1016/S0034-4257(03)00054-3.
  • Ludwig, J. A., R. W. Eager, G. N. Bastin, V. H. Chewings, and A. C. Liedloff. 2002. “A Leakiness Index for Assessing Landscape Function Using Remote Sensing.” Landscape Ecology 17: 157–171. doi:10.1023/A:1016579010499.
  • Ludwig, J. A., J. A. Wiens, and D. J. Tongway. 2000. “A Scaling Rule for Landscape Patches and How It Applies to Conserving Soil Resources in Savannas.” Ecosystems 3: 84–97. doi:10.1007/s100210000012.
  • Lymburner, L., P. Tan, N. Mueller, R. Thackway, A. Lewis, M. Thankappan, L. Randall, A. Islam, and U. Senarath. 2011. Dynamic Land Cover Dataset Version 1. Canberra: Geoscience Australia.
  • Marañón, T., F. I. Pugnaire, and R. M. Callaway. 2009. “Mediterranean-Climate Oak Savannas: The Interplay between Abiotic Environment and Species Interactions.” Web Ecology 9: 30–43. doi:10.5194/we-9-30-2009.
  • McKeon, G. M., W. B. Hall, B. K. Henry, G. S. Stone, and I. W. Watson. 2004. Pasture Degradation and Recovery in Australia’s Rangelands: Learning from History, 256 pp. Brisbane: Queensland Department of Natural Resources, Mines and Energy.
  • Muir, J., M. Schmidt, D. Tindall, R. Trevithick, P. Scarth, and J. Stewart. 2011. “Guidelines for Field Measurement of Fractional Ground Cover: A Technical Handbook Supporting the Australian Collaborative Land Use and Management Program.” Tech. rep., Queensland Department of Environment and Resource Management for the Australian Bureau of Agricultural and Resource Economics and Sciences, Canberra.
  • Nagler, P. L., Y. Inoue, E. P. Glenn, A. L. Russ, and C. S. T. Daughtry. 2003. “Cellulose Absorption Index (CAI) to Quantify Mixed Soil-Plant Litter Scenes.” Remote Sensing of Environment 87: 310–325. doi:10.1016/j.rse.2003.06.001.
  • NFI. 2003. Australia’s State of the Forests Report 2003. Canberra: Bureau of Rural Sciences.
  • Okin, G. S., K. D. Clarke, and M. M. Lewis. 2013. “Comparison of Methods for Estimation of Absolute Vegetation and Soil Fractional Cover Using MODIS Normalized BRDF-Adjusted Reflectance Data.” Remote Sensing of Environment 130: 266–279. doi:10.1016/j.rse.2012.11.021.
  • Olson, D. M., E. Dinerstein, E. D. Wikramanayake, N. D. Burgess, G. V. Powell, E. C. Underwood, J. A. D’amico, I. Itoua, H. E. Strand, and J. C. Morrison. 2001. “Terrestrial Ecoregions of the World: A New Map of Life on Earth A New Global Map of Terrestrial Ecoregions Provides an Innovative Tool for Conserving Biodiversity.” Bioscience 51: 933–938. doi:10.1641/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2.
  • Parr, C. L., C. E. Lehmann, W. J. Bond, W. A. Hoffmann, and A. N. Andersen. 2014. “Tropical Grassy Biomes: Misunderstood, Neglected, and under Threat.” Trends in Ecology & Evolution 29: 205–213. doi:10.1016/j.tree.2014.02.004.
  • Pearlman, J. S., P. S. Barry, C. C. Segal, J. Shepanski, D. Beiso, and S. L. Carman. 2003. “Hyperion, a Space-Based Imaging Spectrometer.” IEEE Transactions on Geoscience and Remote Sensing 41: 1160–1173. doi:10.1109/TGRS.2003.815018.
  • Prior, L. D., D. Eamus, and D. M. J. S. Bowman. 2003. “Leaf Attributes in the Seasonally Dry Tropics: A Comparison of Four Habitats in Northern Australia.” Functional Ecology 17: 504–515. doi:10.1046/j.1365-2435.2003.00761.x.
  • Rickards, J., J. Stewart, L. Randall, and V. Bordas. 2012. “Australian Ground Cover Reference Sites Database: User Guide for Postgis.” Victoria 48: 20.
  • Roderick, M. L., I. R. Noble, and S. W. Cridland. 1999. “Estimating Woody and Herbaceous Vegetation Cover from Time Series Satellite Observations.” Global Ecology and Biogeography 8: 501–508. doi:10.1046/j.1365-2699.1999.00153.x.
  • Román, M. O., C. B. Schaaf, C. E. Woodcock, A. H. Strahler, X. Yang, R. H. Braswell, P. S. Curtis, K. J. Davis, D. Dragoni, and M. L. Goulden. 2009. “The MODIS (Collection V005) BRDF/Albedo Product: Assessment of Spatial Representativeness over Forested Landscapes.” Remote Sensing of Environment 113: 2476–2498. doi:10.1016/j.rse.2009.07.009.
  • Rossatto, D. R., L. da Silveira LoboSternberg, and A. C. Franco. 2013. “The Partitioning of Water Uptake between Growth Forms in a Neotropical Savanna: Do Herbs Exploit a Third Water Source Niche?” Plant Biology 15: 84–92. doi:10.1111/plb.2012.15.issue-1.
  • Rossatto, D. R., L. C. R. Silva, L. S. L. Sternberg, and A. C. Franco. 2014. “Do Woody and Herbaceous Species Compete for Soil Water across Topographic Gradients? Evidence for Niche Partitioning in a Neotropical Savanna.” South African Journal of Botany 91: 14–18. doi:10.1016/j.sajb.2013.11.011.
  • Sankaran, M., N. P. Hanan, R. J. Scholes, J. Ratnam, D. J. Augustine, B. S. Cade, J. Gignoux, et al. 2005. “Determinants of Woody Cover in African Savannas.” Nature 438: 846–849. doi:10.1038/nature04070.
  • Sarmiento, G., G. Goldstein, and F. Meinzer. 1985. “Adaptive Strategies of Woody Species in Neotropical Savannas.” Biological Reviews 60: 315–355. doi:10.1111/brv.1985.60.issue-3.
  • Scanlon, T. M., and J. D. Albertson. 2003. “Inferred Controls on Tree/Grass Composition in a Savanna Ecosystem: Combining 16-Year Normalized Difference Vegetation Index Data with a Dynamic Soil Moisture Model.” Water Resources Research 39: 1224. doi:10.1029/2002WR001881.
  • Scanlon, T. M., J. D. Albertson, K. K. Caylor, and C. A. Williams. 2002. “Determining Land Surface Fractional Cover from NDVI and Rainfall Time Series for a Savanna Ecosystem.” Remote Sensing of Environment 82: 376–388. doi:10.1016/S0034-4257(02)00054-8.
  • Scanlon, T. M., K. K. Caylor, S. Manfreda, S. A. Levin, and I. Rodriguez-Iturbe. 2005. “Dynamic Response of Grass Cover to Rainfall Variability: Implications for the Function and Persistence of Savanna Ecosystems.” Advances in Water Resources 28: 291–302. doi:10.1016/j.advwatres.2004.10.014.
  • Scarth, P., A. Röder, and M. Schmidt. 2010. “Tracking Grazing Pressure and Climate Interaction - the Role of Landsat Fractional Cover in Time Series Analysis.” Proceedings of the 15th Australasian Remote Sensing and Photogrammetry Conference (ARSPC), Alice Springs, Australia. Alice Springs, NT. September 13-17.
  • Schaaf, C. B., F. Gao, A. H. Strahler, W. Lucht, X. Li, T. Tsang, and D. Roy. 2002. “First Operational BRDF, Albedo Nadir Reflectance Products from MODIS.” Remote Sensing of Environment 83: 135–148. doi:10.1016/S0034-4257(02)00091-3.
  • Schaaf, C. B., J. Liu, F. Gao, and A. H. Strahler. 2011. “Aqua and Terra MODIS Albedo and Reflectance Anisotropy Products.” In Land Remote Sensing and Global Environmental Change, edited by B. Ramachandra, C. O. Justice, and M. J. Abrams, Remote Sensing and Digital Image Processing Volume 11, 2011, 549–561. New York: Springer.
  • Schmidt, M., P. Scarth, and J. Milne. 2008. “Ground-Cover Estimation with Iterative Spectral Mixture Analysis.” In Proc. 14th Australasian Remote Sensing and Photogrammetry Conference. Darwin.
  • Sekhwela, M. B. M., and D. J. Yates. 2007. “A Phenological Study of Dominant Acacia Tree Species in Areas with Different Rainfall Regimes in the Kalahari of Botswana.” Journal of Arid Environments 70: 1–17. doi:10.1016/j.jaridenv.2006.12.006.
  • Sokal, R. R., and F. J. Rohlf. 1995. “Section 14.3 “Model II Regression”.” In Biometry. 3rd ed. 541–549. New York: W. H. Freeman.
  • Staver, A. C., S. Archibald, and S. A. Levin. 2011a. “The Global Extent and Determinants of Savanna and Forest as Alternative Biome States.” Science 334: 230–232. doi:10.1126/science.1210465.
  • Staver, A. C., S. Archibald, and S. Levin. 2011b. “Tree Cover in Sub-Saharan Africa: Rainfall and Fire Constrain Forest and Savanna as Alternative Stable States.” Ecology 92: 1063–1072. doi:10.1890/10-1684.1.
  • Tothill, J. C., and C. Gillies. 1992. The Pasture Lands of Northern Australia. Their Condition, Productivity and Sustainability. 106. Brisbane: Tropical Grassland Society of Australia, Occasional Publication No. 5.
  • Williams, R. J., B. A. Myers, W. J. Muller, G. A. Duff, and D. Eamus. 1997. “Leaf Phenology of Woody Species in a North Australian Tropical Savanna.” Ecology 78: 2542–2558. doi:10.1890/0012-9658(1997)078[2542:LPOWSI]2.0.CO;2.
  • WWF. 2001. “Ecoregions GIS database.” http://www.worldwildlife.org/publications/terrestrial-ecoregions-of-the-world

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