An ArcGIS Seabed Characterization Toolbox Developed for Investigating Benthic Habitats

References

• Airamé , S. 2005 . “ Channel Islands National Marine Sanctuary: Advancing the science and policy of marine protected areas ” . In Place matters: Geospatial tools for marine science, conservation, and management in the Pacific Northwest , Edited by: Wright , D. J. and Scholz , A. J. Corvallis, OR : Oregon State University Press .
   Google Scholar
• Anderson , T. J. and Yoklavich , M. M. 2006 . Multiscale habitat associations of deepwater demersal fishes off central California . Fish. Bull , 105 : 168 – 179 .
   Google Scholar
• California Department of Fish and Game (CDFG), Marine Region . May 7 2007 . “ Marine Life Protection Act, Second Phase ” . May 7 , Availabe at http://www.dfg.ca.gov/MRD/mlpa/nccprofile.html
   Google Scholar
• Chavez , P. S. Jr. and Gardner , J. V. 1994 . Extraction of spatial information from remotely sensed image data – An example: Gloria side-scan sonar images . Canadian Journal of Remote Sensing , 20 ( 4 ) : 443 – 453 .
   Google Scholar
• Chavez , P. S. Jr. and Karl , H. A. 1994 . Detection of barrels and waste disposal sites on the seafloor using spatial variability analysis on side-scan sonar and bathymetry images . Marine Geodesy , 18 : 197 – 211 .
   Google Scholar
• Chavez , P. S. Jr. , Isbrecht , J. , Galanis , P. , Gabel , G. L. , Sides , S. C. , Soltesz , D. L. , Ross , S. L. and Velasco , M. G. 2002 . Processing, mosaicking and management of the Monterey Bay digital side-scan-sonar images . Marine Geology , 181 : 305 – 315 .
   Web of Science ®Google Scholar
• Clark , J. C. , Brabb , E. E. , Greene , H. G. and Ross , D. C. 1984 . “ Geology of Point Reyes Peninsula and implications for San Gregorio Fault history ” . In Tectonics and sedimentation along the California margin , Edited by: Crouch , J. K. and Bachman , S. B. 67 – 86 . Society of Economic Paleontologists and Mineralogists, Pacific Section, Vol. 38 .
   Google Scholar
• Clark , J. C. and Brabb , E. B. 1997 . “ Geology of Point Reyes National seashore and vicinity ” . CA A Digital Database. http://geo-nsdi.er.usgs.gov/metadata/open-file/97-456/metadata.faq.html
   Google Scholar
• Dartnell , P. 2000 . “ Applying remote sensing techniques to map seafloor geology/habitat relationships. M.S. Thesis ” . San Francisco State University, San Francisco, California .
   Google Scholar
• De Moustier , C and Matsumoto , H. 1993 . Seafloor acoustic remote sensing with multibeam echo-sounders and bathymetric side-scan sonar systems . Marine Geophysical Researches , 15 : 27 – 42 .
   Web of Science ®Google Scholar
• Diaz , J. V. M. 1999 . “ Analysis of multibeam sonar data for the characterization of seafloor habitats. M. S. Thesis ” . University of New Brunswick .
   Google Scholar
• Erdey-Heydorn , M. D. 2007 . “ An ArcGIS seabed characterization toolbox developed for marine habitat and seafloor investigations. M.S. Thesis ” . California State University Monterey Bay .
   Google Scholar
• Folk , R. L. 1974 . “ The petrology of sedimentary rocks ” . 182 Austin, TX : Hemphill Publishing Co. .
   Google Scholar
• Gott , R. M. 1995 . “ Seafloor characterization using multibeam sonar and acoustic backscatter modeling. PhD Thesis ” . Tulane University .
   Google Scholar
• Greene , H. G. , Yoklavich , M. M. , Starr , R. M. , O'Connell , V. M. , Wakefield , W. W. , Sullivan , D. E. , McRea , J. E. Jr. and Cailliet , G. M. 1999 . A classification scheme for deep seafloor habitats . Oceanologica Acta , 22 ( 6 ) : 663 – 678 .
   Google Scholar
• Greene , H. G. , Kvitek , R. , Bizzarro , J. J. , Bretz , C. and Iampietro , P. 2005a . “ Fisheries habitat characterization of the California continental margin ” . California Sea Grant College Program, Publication T-053 .
   Google Scholar
• Greene , H. G. , Bizzarro , J. J. , Tilden , J. E. , Lopez , H. and Erdey , M. D. 2005b . “ The benefits and pitfalls of GIS in marine benthic habitat mapping ” . In Place matters: Geospatial tools for marine science, conservation, and management in the Pacific Northwest , Edited by: Wright , D. J. and Scholz , A. J. Corvallis, OR : Oregon State University Press .
   Google Scholar
• Greene , H. G. , O'Connell , V. , Wakefield , W. W. and Brylinsky , C. “ The offshore Edgecumbe Lava Field, Southeast Alaska: Geologic and habitat characterization of a commercial fishing ground ” . Geological Association of Canada Special Publication .
   Google Scholar
• Griffiths , H. , Dunlop , J. and Voles , R. 1997 . “ Texture analysis of side-scan sonar imagery using statistical scattering models. High frequency acoustics in shallow water ” . 87 – 194 . Lerici, , Italy NATO Conference on High Frequency Acoustics in Shallow Water, Lerici, Italy, SACLANTCEN Conference Proceedings CP-45 (N. G. Pace, E. Poulinquen, O. Bergem, and A. P. Lyons, eds.), 30 June–4 July 1997.
   Google Scholar
• Guisan , A. , Weiss , S. B. and Weiss , A. D. 1999 . GLM versus CCA spatial modeling of plant species distribution . Plant Ecology , 143 : 107 – 122 .
   Web of Science ®Google Scholar
• Haralick , R. M. , Shanmugam , K. and Dinstein , I. 1973 . Textural features for image classification . IEEE Trans. Systems, Man, and Cybernetics , SMC-3 : 610 – 621 .
   Web of Science ®Google Scholar
• Herzfeld , U. C. and Higginson , C. A. 1996 . Automated geostatistical seafloor classification – principles, parameters, feature vectors and discrimination criteria . Computers and Geosciences , 22 ( 1 ) : 35 – 52 .
   Web of Science ®Google Scholar
• Hughes-Clarke , J. E. , Danforth , B. W. and Valentine , P. 1997 . “ Aerial seabed classification using backscatter angular response at 95 kHz ” . In High Frequency Acoustics in Shallow Water Lerici, , Italy. NATO Conference on High Frequency Acoustics in Shallow Water, Lerici, Italy, SACLANTCEN Conference Proceedings CP-45 (N. G. Pace, E. Poulinquen, O. Bergem, and A. P. Lyons, eds.), 30 June–4 July 1997
   Google Scholar
• Iampietro , P. J. , Kvitek , R. G. and Morris , E. 2005 . Recent advances in automated genus-specific marine habitat mapping enabled by high-resolution multibeam bathymetry . Marine Technology Society Journal , 39 ( 3 ) : 83 – 93 .
   Web of Science ®Google Scholar
• Impagliazzo , J. , Greene , W. and Huynh , Q. 1997 . “ Wavelet analysis of sidescan sonar imagery for classification ” . In High Frequency Acoustics in Shallow Water 259 – 266 . Lerici, , Italy
   Google Scholar
• Jackson , D. R. , Winebrenner , D. P. and Ishimaru , A. 1986 . Application of the composite roughness model to high-frequency bottom scattering . The Journal of the Acoustical Society of America , 79 : 1410 – 1422 .
   Web of Science ®Google Scholar
• Jones , K. B. , Heggem , D. T. , Wade , T. G. , Neale , A. C. , Ebert , D. W. , Nash , M. S. , Mehaffey , M. H. , Hermann , K. A. , Selle , A. R. , Augustine , S. , Goodman , I. A. , Pedersen , J. , Bolgrien , D. , Viger , J. M. , Chiang , D. , Lin , C. J. , Zhong , Y. , Baker , J. and Van Remortel , R. D. 2000 . Assessing landscape conditions relative to water resources in the western United States: A strategic approach . Environmental Monitoring and Assessment , 64 : 227 – 245 .
   Web of Science ®Google Scholar
• Kvitek , R. , Iampietro , P. and Summers-Morris , E. 2003 . “ NOAA Technical Report: Integrated spatial data modeling tools for auto-classification and delineation of species-specific habitat maps from high-resolution, digital hydrographic data ” . Seafloor Mapping Lab, CSUMB, 68 pp
   Google Scholar
• Lee , H. J. S. , Weisberg , S. , Bay , C. , Alexander , B. , Zeng Edwards , E. and Dojiri , M. 1998 . Evaluating changing sediment contamination conditions, Santa Monica Bay, California . EOS Transactions A.G.U. , 79 ( 45 ) : 312
   Google Scholar
• Love , M. S. , Yoklavich , M. and Thorsteinson , L. 2002 . “ The rockfishes of the Northeast Pacific ” . Berkeley, CA: University of California Press .
   Google Scholar
• Lundblad , E. , Wright , D. J. , Miller , J. , Larkin , E. M. , Rinehart , R. , Battista , T. , Anderson , S. M. , Naar , D. F. and Donahue , B. T. 2006 . A benthic terrain classification scheme for American Samoa . Marine Geodesy , 29 ( 2 ) : 89 – 111 .
   Google Scholar
• Mason , J. 1999 . Declines in rockfish: Declining rockfish lengths in the Monterey Bay, California Recreational Fishery, 1959–94 . Mar. Fish. Rev. , 60 : 3
   Google Scholar
• Matsumoto , H. , Dziak , R. P. and Fox , C. 1993 . Estimation of seafloor microtopographic roughness through modeling of acoustic backscatter data recorded by multibeam systems . The Journal of the Acoustical Society of America , 94 : 2776 – 2787 .
   Web of Science ®Google Scholar
• Mayer , L. A. , Dijkstra , S. , Clarke Hughes , J. , Paton , M. and Ware , C. 1997 . “ Interactive tools for the exploration and analysis of multibeam and other acoustic seafloor data ” . In High frequency acoustics in shallow water 355 – 362 . Lerici, , Italy
   Google Scholar
• Mayer , L. , Clarke Hughes , J. and Dijkstra , S. 1999 . Multibeam sonar: Potential applications for fisheries research . Journal of Shellfish Research , 17 ( 5 ) : 1463 – 1467 .
   Web of Science ®Google Scholar
• Mitchell , N. C. 1996 . Processing and analysis of Simrad multibeam sonar data . Marine Geophysical Researches , 18 ( 6 ) : 729 – 739 .
   Web of Science ®Google Scholar
• Mitchell , N. C. and Clarke Hughes , J. E. 1994 . Classification of seafloor geology using multibeam sonar data from the Scotian Shelf . Marine Geology , 121 : 143 – 160 .
   Web of Science ®Google Scholar
• Monaco , M. E. , Kendall , M. S. , Higgins , J. , Alexander , C. and Tartt , M. 2005 . “ Biogeographic assessments of NOAA national marine sanctuaries: The integration of ecology and GIS to aid in marine management boundary delineation and assessment ” . In Place matters: Geospatial tools for marine science, conservation, and management in the Pacific Northwest, , Edited by: Wright , D. J. and Scholz , D. J. Corvallis, OR : Oregon State University Press .
   Google Scholar
• National Oceanic and Atmospheric Association (NOAA) Fisheries Service . 2005 . “ Final groundfish essential fish habitat Environmental Impact Statement ” . Seattle, WA : Northwest Regional Office . AVailable at http://www.nwr.noaa.gov/Groundfish-Halibut/Groundfish-Fishery-Management/NEPA-Documents/EFH-Final-EIS.cfm
   Google Scholar
• O'Connell , V. M. and Carlile , D. W. 1993 . Habitat-specific density of adult yelloweye rockfish Sebastes ruberrimus in the eastern Gulf of Alaska . Fishery Bulletin , 91 : 304 – 309 .
   Web of Science ®Google Scholar
• O'Connell , V. M. , Carlile , D. W. and Wakefield , W. W. 1998 . “ Using line transects and habitat-based assessment techniques to estimate the density of yelloweye rockfish (Scorpaenidae: Sebastes) in the Eastern Gulf of Alaska ” . International Council for the Exploration of the Seas, ICES CM 1998/O: 56, 7 pp .
   Google Scholar
• Parker , S. J. , Berkeley , J. T. , Golden , D. R. , Gunderson , J. , Heifetz , J , Hixon , M. A. , Larson , R. , Leaman , B. B. M. , Love , M. S. , Musick , J. A. , O'Connell , V. M. , Ralston , S. , Weeks , H. J. and Yoklavich , M. M. 2000 . Management of Pacific rockfish . Fisheries , 23 : 22 – 25 .
   Web of Science ®Google Scholar
• Pearcy , W. G. , Stein , D. L. , Hixon , M. A. , Pikitch , E. K. , Barss , W. H. and Starr , R. M. 1989 . Submersible observations of deep-reef fishes of Heceta Bank, Oregon . Fish. Bull. , 87 : 955 – 965 .
   Google Scholar
• Reed , T. B. IV and Hussong , D. 1989 . Digital image processing techniques for enhancement and classification of SeaMARC II sidescan sonar imagery . Journal of Geophysical Research , 94 ( B6 ) : 7469 – 7490 .
   Web of Science ®Google Scholar
• Richards , L. J. 1986 . Depth and habitat distributions of three species of rockfish (Sebastes) in British Columbia. Observations from the submersible PISCES IV . Environ. Biol. Fishes , 17 : 13 – 21 .
   Web of Science ®Google Scholar
• Scholz , A. , Mertens , M. and Steinback , C. 2005 . “ The OCEAN Framework – Modeling the linkages between marine ecology, fishing economy, and coastal communities ” . In Place matters: Geospatial tools for marine science, conservation, and management in the Pacific Northwest , Edited by: Wright , D. J. and Scholz , D. J. Corvallis, OR : Oregon State University Press .
   Google Scholar
• Starr , R. M. 1998 . “ Design principles for rockfish reserves on the U.S. west coast. Marine harvest refugia for west coast rockfish: A workshop ” . Edited by: Yoklavich , M. 50 – 63 . U.S. Dep. Commer, NOAA Tech. Memo. NMFS-SWFC-255, 159 pp .
   Google Scholar
• Starr , R. M. , Cope , J. M. and Kerr , L. A. 2002 . “ Trends in fisheries and fishery resources associated with the Monterey Bay National Marine Sanctuary from 1981–2000 ” . La Jolla, CA : California Sea Grant College Program, University of California . Publication No. T-046, 156 pp
   Google Scholar
• Stein , D. L. , Tissot , B. N. , Hixon , M. A. and Barss , W. H. 1992 . Fish-habitat associations on a deep reef at the edge of the Oregon continental shelf . Fish. Bull. , 87 : 540 – 551 .
   Google Scholar
• Tilden , J. E. 2004 . “ Marine geology and potential rockfish habitat in the southwestern San Juan Islands. Washington. M. S. Thesis ” . California State University, Monterey Bay .
   Google Scholar
• Wakefield , W. W. , O'Connell , V. M. , Greene , H. G. , Carlile , D. W. and McRea , J. E. 1998 . “ The role of sidescan sonar in seafloor classification with a direct application to commercial fisheries management ” . International Council for the Exploration of the Seas, ICES CM 1998/O: 36, 11 pp .
   Google Scholar
• Watson , R. , Alder , J. , Christensen , V. and Pauly , D. 2005 . “ Mapping global fisheries patterns and their consequences ” . In Place matters: Geospatial tools for marine science, conservation, and management in the Pacific Northwest , Edited by: Wright , D. J. and Scholz , D. J. Corvallis, OR : Oregon State University Press .
   Google Scholar
• Wedell , V. , Revell , D. , Anderson , L. and Cobb , L. 2005 . “ Port Orford Ocean Resources team: Partnering local and scientific knowledge with GIS to create a sustainable community in southern Oregon ” . In Place matters: Geospatial tools for marine science, conservation, and management in the Pacific Northwest , Edited by: Wright , D. J. and Scholz , D. J. Corvallis, OR : Oregon State University Press .
   Google Scholar
• Weiss , A. D. . Topographic position and landforms analysis (map gallery poster) . Proceedings of the 21st Annual ESRI User Conference . San Diego, CA.
   Google Scholar
• Whitmire , C. E. 2003 . “ Using remote sensing, in situ observations, and geographic information systems to map benthic habitats at Heceta Bank ” . 61 Oregon : Oregon State University .
   Google Scholar
• Wright , D. J. , Lundblad , E. R. , Larkin , E. M. , Rinehart , R. W. , Murphy , J. , Cary-Kothera , L. and Draganov , K. April 2005 . April , NOAA Coastal Services Center ArcGIS Benthic Terrain Modeler version 1.0
   Google Scholar
• Wright , D. J. , Blongewicz , M. J. , Halpin , P. N. and Breman , J. 2007 . “ Arc Marine: GIS for a blue planet ” . 202 Redlands, CA : ESRI Press .
   Google Scholar
• Yoklavich , M. M. , Starr , R. M. , Steger , J. , Greene , H. G. , Schwing , F. and Malzone , C. 1997 . “ Mapping benthic habitats and ocean currents in the vicinity of central California's Big Creek Reserve ” . U.S. Dep. Commer., NOAA Tech. Memo. NMFS-SWFC-245, 52 pp
   Google Scholar
• Yoklavich , M. M. , Greene , H. G. , Cailliet , G. M. , Sullivan , D. E. , Lea , R. N. and Love , M. S. 2000 . Habitat associations of deep-water rockfishes in a submarine canyon: an example of a natural refuge . Fishery Bulletin , 98 ( 3 ) : 625 – 641 .
   Web of Science ®Google Scholar
• Yoklavich , M. M. , Cailliet , G. M. , Lea , R. N. , Greene , H. G. , Starr , R. M. , Marignac , J. and Field , J. 2002 . Deepwater habitat and fish resources associated with the Big Creek Marine Ecological Reserve . CalCOFI Rep. , 43 : 120 – 140 .
   Google Scholar