Structure and Dynamics of Exopolymers in an Intertidal Diatom Biofilm

REFERENCES

• Bellinger , B J , Abdullahi , A S , Gretz , M R and Underwood , G JC . 2005 . Biofilm polymers: relationship between carbohydrate biopolymers from estuarine mudflats and unialgal cultures of benthic diatoms . Aqua Microb Ecol , 38 : 169 – 180 . [CSA]
   Web of Science ®Google Scholar
• Dade , W B , Davis , J D , Nichols , P D , Nowell , A RM , Thistle , D , Trexler , M B and White , D C . 1990 . Effects of bacterial exopolymer adhesion on the entrainment of sand . Geomicrobiol , 8 : 1 – 16 . [CSA]
   Web of Science ®Google Scholar
• de Brouwer , J FC , de Deckere , E MGT and Stal , L J . 2003 . Distribution of extracellular carbohydrates in three intertidal mudflats in west-Europe . Estuar Coastal Shelf Sci , 56 : 313 – 324 . [CSA] [CROSSREF]
   Web of Science ®Google Scholar
• de Brouwer , J FC , Ruddy , G K , Jones , T ER and Stal , L J . 2002a . Adsorption of EPS to sediment particles and the effect on the rheology of sediment slurries . Biogeochemistry , 61 : 57 – 71 . [CSA] [CROSSREF]
   Web of Science ®Google Scholar
• de Brouwer , J FC and Stal , L J . 2001 . Short-term dynamics in microphytobenthos distribution and associated extracellular carbohydrates in surface sediments of an intertidal mudflat . Marine Ecol Progr Ser , 218 : 33 – 44 . [CSA]
   Web of Science ®Google Scholar
• de Brouwer , J FC and Stal , L J . 2002 . Daily fluctuations of exopolymer in cultures of the benthic diatoms Cylindrotheca closterium and Nitzschia sp. (Bacillariophyceae) . J Phycol , 38 : 464 – 472 . [CSA] [CROSSREF]
   Web of Science ®Google Scholar
• de Brouwer , J FC , Wolfstein , K and Stal , L J . 2002b . Physical characterization and diel dynamics of different fractions of extracellular polysaccharides in an axenic culture of a benthic diatom . Eur J Phycol , 37 : 37 – 44 . [CSA] [CROSSREF]
   Web of Science ®Google Scholar
• Decho , A W . 1994 . “ Molecular-scale events influencing the macroscale cohesiveness of exopolymers ” . In Biostabilization of Sediments , Edited by: Krumbein , W E , Paterson , D M and Stal , L J . 135 – 148 . Oldenburg : BIS Verlag .
   Google Scholar
• Défarge , C , Malam Issa , O and Trichet , J . 1999 . Apports du cryo-microscope électronique à balayage à émission de champ à l'étude des matières organiques et des relations organo-minérales naturelles. Application aux croûtes microbiotiques des sols . C R Acad Sci Paris, Sciences de la Terre et des planètes , 328 : 591 – 597 . [CSA]
   Google Scholar
• de Winder , B , Staats , N , Stal , L J and Paterson , D M . 1999 . Carbohydrate secretion by phototrophic communities in tidal sediments . J Sea Res , 42 : 131 – 146 . [CSA] [CROSSREF]
   Web of Science ®Google Scholar
• Dubois , M , Gilles , K A , Hamilton , J K , Rebers , P A and Smith , F . 1956 . Colorimetric method for determination of sugars and related substances . Anal Chem , 28 : 350 – 356 . [CSA] [CROSSREF]
   Web of Science ®Google Scholar
• Galois , R , Blanchard , G , Seguignes , M , Huet , V and Joassard , L . 2000 . Spatial distribution of sediment particulate organic matter on two estuarine intertidal mudflats: a comparison between Marennes-Oléron bay (France) and the Humber estuary (UK) . Continental Shelf Res , 20 : 1199 – 1217 . [CSA] [CROSSREF]
   Web of Science ®Google Scholar
• Garcia-Pichel , F and Bebout , B M . 1996 . Penetration of ultraviolet radiation into shallow water sediments: High exposure for photosynthetic communities . Mar Ecol Prog Ser , 131 : 257 – 262 . [CSA]
   Web of Science ®Google Scholar
• Goto , N , Kawamura , T , Mitamura , O and Terai , H . 1999 . Importance of extracellular organic carbon production in the total primary production by tidal-flat diatoms in comparison to phytoplankton . Mar Ecol Prog Ser , 190 : 289 – 295 . [CSA]
   Google Scholar
• Hoagland , K D , Rosowski , J R , Gretz , M R and Roemer , S C . 1993 . Diatom extracellular polymeric substances–function, fine structure, chemistry, and physiology . J Phycol , 29 : 537 – 566 . [CSA] [CROSSREF]
   Web of Science ®Google Scholar
• Lind , J L , Heimann , K , Miller , E A , van Vliet , C , Hoogenraad , N J and Wetherbee , R . 1997 . Substratum adhesion and gliding in a diatom are mediated by extracellular proteoglycans . Planta , 203 : 213 – 221 . [PUBMED] [INFOTRIEVE] [CSA] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Lorenzen , C J and Newton Downs , J . 1986 . The specific absorption coefficients of chlorophyllide a and pheophorbide a in 90% acetone and comments on the fluorometric determinations of cholophyll and pheopigments . Limnol and Oceanogr , 31 : 449 – 456 . [CSA]
   Web of Science ®Google Scholar
• Middelburg , J J , Barranguet , C , Boschker , H TS , Herman , P MJ , Moens , T and Heip , C HR . 2000 . The fate of intertidal microphytobenthos carbon: an in situ 13C-labeling study . Limnol and Oceanogr , 45 : 1224 – 1234 . [CSA]
   Web of Science ®Google Scholar
• Paterson , D M . 1989 . Short-term changes in the erodibility of intertidal cohesive sediments related to the migratory behaviour of epipelic diatoms . Limnol and Oceanogr , 34 : 223 – 234 . [CSA]
   Web of Science ®Google Scholar
• Serôdio , J , Marques da Silva , J and Catarino , F . 1997 . Nondestructive tracing of migratory rhythms of intertidal benthic microalgae using in vivo chlorophyll a fluorescence . Journal of Phycology , 33 : 542 – 553 . [CSA] [CROSSREF]
   Web of Science ®Google Scholar
• Staats , N , de Winder , B , Stal , L J and Mur , L R . 1999 . Isolation and characterization of extracellular polysaccharides from the epipelic diatoms Cylindrotheca closterium and Navicula salinarum . European J Phycol , 34 : 161 – 169 . [CSA] [CROSSREF]
   Web of Science ®Google Scholar
• Staats , N , Stal , L J , de Winder , B and Mur , L R . 2000 . Oxygenic photosynthesis as driving process in exopolysaccharide production of benthic diatoms . Mar Ecol Prog Ser , 193 : 261 – 269 . [CSA]
   Web of Science ®Google Scholar
• Sutherland , I W . 1999 . “ Biofilm exopolysaccharides ” . In Microbial Extracellular Polymeric Substances , Characterization, Structure and Function Edited by: Wingender , J , Neu , T R and Flemming , H-C . 73 – 92 . Berlin : Springer .
   Google Scholar
• Sutherland , I W . 2001 . The biofilm matrix—an immobilized but dynamic microbial environment . Trends Microbiol , 9 : 222 – 227 . [PUBMED] [INFOTRIEVE] [CSA] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Taylor , I S and Paterson , D M . 1998 . Microspatial variation in carbohydrate concentrations with depth in the upper millimetres of intertidal cohesive sediments . Estuarine Coastal Shelf Science , 46 : 359 – 370 . [CSA] [CROSSREF]
   Web of Science ®Google Scholar
• Taylor , I S , Paterson , D M and Mehlert , A . 1999 . The quantitative variability and monosaccharide composition of sediment carbohydrates associated with intertidal diatom assemblages . Biogeochemistry , 45 : 303 – 327 . [CSA]
   Web of Science ®Google Scholar
• Underwood , G JC and Kromkamp , J . 1999 . Primary production by phytoplankton and microphytobenthos in estuaries . Adv Ecol Res , 29 : 93 – 153 . [CSA]
   Web of Science ®Google Scholar
• Underwood , G JC and Paterson , D M . 2003 . The importance of extracellular carbohydrate production by marine epipelic diatoms . Adv Botan Res , 40 : 183 – 240 . [CSA] [CROSSREF]
   Web of Science ®Google Scholar
• Underwood , G JC and Smith , D J . 1998 . Predicting epipelic diatom exopolymer concentrations in intertidal sediments from sediment chlorophyll a . Microb Ecol , 35 : 116 – 125 . [PUBMED] [INFOTRIEVE] [CSA] [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Vos , P C , de Boer , P L and Misdorp , R . 1988 . “ Sediment stabilization by benthic diatoms in intertidal sandy shoals; Qualitative and quantitative observations ” . In Tide-Influenced Sedimentary Environments and Facies , Edited by: de Boer , P L , van Gelder , A and Nio , S D . 511 – 526 . Dordrecht : D. Reidel Publishing Company .
   Google Scholar
• Wiltshire , K H , Blackburn , J and Paterson , D M . 1997 . The cryolander: A new method for in situ sampling of intertidal surface sediments . J Sedimen Res , 67 : 981 – 997 . [CSA]
   Google Scholar
• Wolfstein , K , de Brouwer , J FC and Stal , L J . 2002 . Biochemical partitioning of photosynthetically fixed carbon by benthic diatoms during short-term incubations at different irradiances . Mar Ecol Prog Ser , 245 : 21 – 31 . [CSA]
   Web of Science ®Google Scholar