Organic Acid-Dependent Iron Mineral Formation by a Newly Isolated Iron-Reducing Bacterium, Shewanella sp. HN-41

REFERENCES

• Allison , J D , Brown , D S and Novo-Gradac , K J . 1991 . MINTEQA2/PRODEFA2, a Geochemical Assessment Model for Environmental Systems: Version 3.0 User's Manual , Athens, Georgia : U.S. EPA .
   Google Scholar
• Altschul , S F , Madden , T L , Schaffer , A A , Zhang , J , Zhang , Z , Miller , W and Lipman , D J . 1997 . Gapped BLAST and PSI-BLAST: A new generation of protein database search programs . Nucleic Acids Res , 25 : 3389 – 3402 .
   PubMed Web of Science ®Google Scholar
• Anderson , R T , Rooney-Varga , J N , Gaw , C V and Lovley , D R . 1998 . Anaerobic benzene oxidation in the Fe(III) reduction zone of petroleum-contaminated aquifers . Environ Sci Tech , 32 : 1222 – 1229 .
   Web of Science ®Google Scholar
• Bell , P E , Mills , A L and Herman , J S . 1987 . Biogeochemical conditions favoring magnetite formation during anaerobic iron reduction . Appl Environ Microbiol , 53 : 2610 – 2616 .
   PubMed Web of Science ®Google Scholar
• Canfield , D E , Thamdrup , B and Hansen , J W . 1993 . The anaerobic oxidation of organic matter in Danish coastal sediments: Iron reduction, manganese reduction, and sulfate reduction . Geochim Cosmochim Acta , 57 : 3867 – 3885 .
   PubMed Web of Science ®Google Scholar
• Chun , J . 1995 . Computer-Assisted Classification and Identification of Actinomycetes , United Kingdom : University of Newcastle upon Tyne, Newcastle upon Tyne .
   Google Scholar
• Coleman , M L , Hedrick , D B , Lovley , D R , White , D C and Pye , K . 1993 . Reduction of Fe(III) in sediments by sulphate-reducing bacteria . Nature , 361 : 436 – 438 .
   Web of Science ®Google Scholar
• Francis , C A , Obraztsova , A Y and Tebo , B M . 2000 . Dissimilatory metal reduction by the facultative anaerobe Pantoea agglomerans SP1 . Appl Environ Microbiol , 66 : 543 – 548 .
   PubMed Web of Science ®Google Scholar
• Fredrickson , J K , Zachara , J M , Kennedy , D W , Dong , H , Onstott , T C , Hinman , N W and Li , S M . 1998 . Biogenic iron mineralization accompanying the dissimilatory reduction of hydrous ferric oxide by a groundwater bacterium . Geochim Cosmochim Acta , 62 : 3239 – 3257 .
   Web of Science ®Google Scholar
• Hansel , C M , Benner , S G , Neiss , J , Dohnalkova , A , Kukkadapu , R K and Fendorf , S . 2003 . Secondary mineralization pathways induced by dissimilatory iron reduction of ferrihydrite under advective flow . Geochim Cosmochim Acta , 67 : 2977 – 2992 .
   Web of Science ®Google Scholar
• Holmes , D E , Nicoll , J S , Bond , D R and Lovley , D R . 2004 . Potential role of a novel psychrotolerant member of the family Geobacteraceae Geopsychrobacter electrodiphilus gen. nov., sp. nov., in electricity production by a marine sediment fuel cell . Appl Environ Microbiol , 70 : 6023 – 6030 .
   PubMed Web of Science ®Google Scholar
• Kukkadapu , R K , Zachara , J M , Fredrickson , J K and Kennedy , D W . 2004 . Biotransformation of two-line silica-ferrihydrite by a dissimilatory Fe(III)-reducing bacterium: Formation of carbonate green rust in the presence of phosphate . Geochim Cosmochim Acta , 68 : 2799 – 2814 .
   Web of Science ®Google Scholar
• Lovley , D R . 1987 . Organic matter mineralization with the reduction of ferric iron: A review . Geomicromiol J , 5 : 375 – 399 .
   Web of Science ®Google Scholar
• Lovley , D R . 1991 . Dissimilatory Fe(III) and Mn(IV) reduction . Microbiol Rev , 55 : 259 – 287 .
   PubMedGoogle Scholar
• Lovley , D R . 1997 . Microbial Fe(III) reduction in subsurface environments . FEMS Microbiol Rev , 20 : 305 – 313 .
   Web of Science ®Google Scholar
• Lovley , D R , Baedecker , M J , Lonergan , D J , Cozzarelli , I M , Phillips , E JP and Siegel , D I . 1989a . Oxidation of aromatic contaminants coupled to microbial iron reduction . Nature , 339 : 297 – 300 .
   Web of Science ®Google Scholar
• Lovley , D R and Phillips , E JP . 1988 . Novel mode of microbial energy metabolism: Organic carbon oxidation coupled to dissimilatory reduction of iron or manganese . Appl Environ Microbiol , 54 : 1472 – 1480 .
   PubMed Web of Science ®Google Scholar
• Lovley , D R and Phillips , E JP . 1986 . Organic matter mineralization with reduction of ferric iron in anaerobic sediments . Appl Environ Microbiol , 51 : 683 – 689 .
   PubMed Web of Science ®Google Scholar
• Lovley , D R and Phillips , E JP . 1989 . Requirement for a microbial consortium to completely oxidize glucose in Fe(III)-reducing sediments . Appl Environ Microbiol , 55 : 3234 – 3236 .
   PubMed Web of Science ®Google Scholar
• Lovley , D R , Phillips , E JP and Lonergan , D J . 1989b . Hydrogen and formate oxidation coupled to dissimilatory reduction of iron or manganese by Alteromonas putrefaciens . Appl Environ Microbiol , 55 : 700 – 706 .
   PubMed Web of Science ®Google Scholar
• Lovley , D R , Stolz , J F , Nord , G L and Phillips , E JP . 1987 . Anaerobic production of magnetite by a dissimilatory iron-reducing microorganism . Nature , 330 : 252 – 254 .
   Web of Science ®Google Scholar
• Lovley , D R , Woodward , J C and Chapelle , F H . 1994 . Stimulated anoxic biodegradation of aromatic hydrocarbons using Fe(III) ligands . Nature , 370 : 128 – 131 .
   PubMed Web of Science ®Google Scholar
• Miller , T L and Wolin , M J . 1974 . A serum bottle modification of the Hungate technique for cultivating obligate anaerobes . Appl Microbiol , 27 : 985 – 987 .
   PubMedGoogle Scholar
• Mortimer , R JG and Coleman , M L . 1997 . Microbial influence on the oxygen isotopic composition of diagenetic siderite . Geochim Cosmochim Acta , 61 : 1705 – 1711 .
   Web of Science ®Google Scholar
• Nealson , K H , Belz , A and McKee , B . 2002 . Breatjing metals as a way of life: Geobiology in action . Antonie van Leeuwenhoek , 81 : 215 – 222 .
   PubMed Web of Science ®Google Scholar
• Nealson , K H and Saffarini , D . 1994 . Iron and manganese in anaerobic respiration: Environmental significance, physiology, and regulation . Annu Rev Microbiol , 48 : 311 – 343 .
   PubMed Web of Science ®Google Scholar
• Roh , Y , Lauf , R J , McMillan , A D , Zhang , C , Rawn , C J , Bai , J and Phelps , T J . 2001 . Microbial synthesis and the characterization of metal-substituted magnetites . Solid State Commun , 118 : 529 – 534 .
   Web of Science ®Google Scholar
• Roh , Y , Liu , S V , Li , G , Huang , H , Phelps , T J and Zhou , J . 2002 . Isolation and characterization of metal-reducing Thermoanaerobacter strains from deep subsurface environments of the Piceance Basin, Colorado . Appl Environ Microbiol , 68 : 6013 – 6020 .
   PubMed Web of Science ®Google Scholar
• Roh , Y , Zhang , C L , Vali , H , Lauf , R J , Zhou , J and Phelps , T J . 2003 . Biogeochemical and environmental factors in Fe biomineralization: Magnetite and siderite formation . Clay Clay Miner , 51 : 83 – 95 .
   Web of Science ®Google Scholar
• Saitou , N and Nei , M . 1987 . The neighbor-joining method: A new method for reconstructing phylogenetic trees . Mol Biol Evol , 4 : 406 – 425 .
   PubMed Web of Science ®Google Scholar
• Schwertmann , U and Cornell , R M . 2000 . Iron Oxides in the Laboratory: Preparation and Characterization , Weinheim : Wiley-VCH .
   Google Scholar
• Scott , J H and Nealson , K H . 1994 . A biochemical study of the intermediary carbon metabolism of Shewanella putrefaciens . J Bacteriol , 176 : 3408 – 3411 .
   PubMed Web of Science ®Google Scholar
• Stookey , L L . 1970 . Ferrozine—A new spectrophotometric reagent for iron . Anal Chem , 42 : 779 – 781 .
   Web of Science ®Google Scholar
• Thamdrup , B , Glud , R N and Hansen , J W . 1994 . Manganese oxidation and in situ manganese fluxes from a coastal sediment . Geochim Cosmochim Acta , 58 : 2577 – 2583 .
   Web of Science ®Google Scholar
• Vali , H , Weiss , B , Li , Y L , Sears , S K , Kim , S S , Kirschvink , J L and Zhang , C L . 2004 . Formation of tabular single-domain magnetite induced by Geobacter metallireducens GS-15 . Proc Natl Acad Sci , 101 : 16121 – 16126 .
   PubMed Web of Science ®Google Scholar
• Zachara , J M , Fredrickson , J K , Smith , S C and Gassman , P L . 2001 . Solubilization of Fe(III) oxide-bound trace metals by a dissimilatory Fe(III) reducing bacterium . Geochim Cosmochim Acta , 65 : 75 – 93 .
   Web of Science ®Google Scholar
• Zhang , C , Liu , S , Phelps , T J , Cole , D R , Horita , J , Fortier , S M , Elless , M and Valley , J W . 1997 . Physiochemical, mineralogical, and isotopic characterization of magnetite-rich iron oxides formed by thermophilic iron-reducing bacteria . Geochim Cosmochim Acta , 61 : 4621 – 4632 .
   Web of Science ®Google Scholar