165
Views
20
CrossRef citations to date
0
Altmetric
Original Articles

Archaeoglobus fulgidus and Thermotoga elfii, Thermophilic Isolates from Deep Geothermal Water of the Paris Basin

, , , , , , & show all
Pages 119-130 | Received 15 May 2009, Accepted 03 Nov 2009, Published online: 19 Feb 2009

REFERENCES

  • Abou Akar , A , Ignatiadis , I and Lesueur , H . 1995 . “ Methods for detecting perforations in casings of wells exploiting geothermal fluids ” . In Proceedings of the World Geothermal Congress, Worldwide utilisation of geothermal energy , Edited by: Barbier , E , Frye , G , Iglesias , E and Palmason , G . Vol. 4 , 2397 – 2402 . Auckland, , New Zealand : International Geothermal Association (IGA) .
  • Altschul , S F , Madden , T L , Schäffer , A A , Zhang , Z , Miller , W and Lipman , D J . 1997 . Gapped BLAST and PSI-BLAST, a new generation of protein database search programs . Nucl Acids Res , 25 : 3389 – 3402 .
  • Amalhay , M , Abou Akar , A and Ignatiadis , I . 1995 . “ Overview of the deposition phenomena in geothermal wells in the Paris Basin ” . In Proceedings of the World Geothermal Congress, Worldwide utilisation of geothermal energy , Edited by: Barbier , E , Frye , G , Iglesias , E and Palmason , G . Vol. 4 , 2497 – 2502 . Auckland, , New Zealand : International Geothermal Association (IGA) .
  • Balch , W E , Fox , G E , Magrum , R J and Wolfe , R S . 1979 . Methanogens: reevaluation of a unique biological group . Microbiol Rev , 43 : 260 – 296 .
  • Beeder , J , Nilsen , R K , Rosnes , J T , Torsvik , T and Lien , T . 1994 . Archaeoglobus fulgidus isolated from hot North Sea oil fields waters . Appl Environ Microbiol , 60 : 1227 – 1231 .
  • Benson , D A , Boguski , M S , Lipman , D J , Oullette , B FF , Rapp , B A and Wheeler , D L . 1999 . GenBank . Nucl Acids Res , 27 : 12 – 17 .
  • Bonch-Osmolovskaya , E A , Miroshnichenko , M L , Lebedinsky , A V , Chernyh , N A , Nazina , T N , Ivoilov , V S , Belyaev , S S , Boulygina , E S , Lysov , Y P , Perov , A N , Mirzabekov , A D , Hippe , H , Stackebrandt , E , L'Haridon , S and Jeanthon , C . 2003 . Radioisotopic, culture-based, and oligonucleotide microchip analyses of thermophilic microbial communities in a continental high-temperature petroleum reservoir . Appl Environ Microbiol , 69 : 6143 – 6151 .
  • Brugna-Guiral , M , Tron , P , Nitschke , W , Stetter , K O , Burlat , B , Guigliarelli , B , Bruschi , M and Giudici-Orticoni , M T . 2003 . [NiFe] hydrogenases from the hyperthermophilic bacterium Aquifex aeolicus: properties, function, and phylogenetics . Extremophiles , 7 : 145 – 157 .
  • Burggraf , S , Jannasch , H W , Nicolaus , B and Stetter , K O . 1990 . Archaeoglobus profundus sp. nov., represents a new species within the sulfate-reducing Archaebacteria . Syst Appl Microbiol , 13 : 24 – 28 .
  • Caron , F , Tessier , A , Kramer , J R , Schwarcz , H P and Rees , C E . 1986 . Sulfur and oxygen isotopes of sulfate in precipitation and lakewater, Quebec, Canada . Appl Geochem , 1 : 601 – 606 .
  • Cord-Ruwisch , R . 1985 . A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria . J Microbiol Meth , 4 : 33 – 36 .
  • Criaud , A , Fouillac , C and Marty , B . 1989 . Low enthalpy geothermal fluids from the Paris sedimentary basin. 2. Oxidation-reduction state and consequences for the prediction of corrosion and sulfide scaling . Geothermics , 18 ( 5/6 ) : 711 – 727 .
  • Daumas , S , Lombart , R and Bianchi , A . 1986 . A bacteriological study of geothermal spring waters dating from the Dogger and Trias Period in the Paris Basin . Geomicrobiol J , 4 : 423 – 433 .
  • De Ley , J , Cattoir , H and Reynaerts , A . 1970 . The quantitative measurement of DNA hybridization from renaturation rates . Eur J Biochem , 12 : 133 – 142 .
  • De Marsily , G . 1986 . Quantitative hydrogeology, groundwater hydrology for engineers , New York : Academic Press .
  • Deming , J W and Baross , J A . 1986 . Solid medium for culturing black smoker bacteria at temperatures to 120°C . Appl Environ Microbiol , 51 : 238 – 243 .
  • Epstein , S and Mayeda , T . 1953 . Variation of 18O content of waters from natural sources . Geochim Cosmochim Acta , 4 : 213 – 224 .
  • Fardeau , M L , Ollivier , B , Patel , B KC , Magot , M , Thomas , P , Rimbault , A , Rocchiccioli , F and Garcia , J L . 1997 . Thermotoga hypogea sp. nov., a xylanolytic, thermophilic bacterium from an oil-producing well . Int J Syst Bacteriol , 47 : 1013 – 1019 .
  • Felsenstein , J . 1993 . PHYLIP (Phylogenetic Inference Package) version 3.51c. Distributed by the editor , Seattle, WA, , USA : Department of Genetics, University of Washington .
  • Fouillac , C , Fouillac , A M and Criaud , A . 1990 . Sulfur and oxygen isotopes of dissolved sulphur species in formation waters from the Dogger geothermal aquifer, Paris Basin, France . Appl Geochem , 5 : 415 – 427 .
  • Fredrickson , J K and Onstott , T C . 1996 . Microbes deep inside the earth . Sci Am , 275 : 42 – 47 .
  • Gonçalvès , J , Violette , S , Guillocheau , F , Robin , C , Pagel , M , Bruel , D , de Marsily , G and Ledoux , E . 2004 . Contribution of a three-dimensional regional scale basin model to the study of the past fluid flow evolution and the present hydrology of the Paris basin, France . Basin Res , 16 : 569 – 586 .
  • Hafenbradl , D , Keller , M , Dirmeier , R , Rachel , R , Rossnagel , P , Burggraf , S , Huber , H and Stetter , K O . 1996 . Ferroglobus placidus gen. nov., sp. nov., a novel hyperthermophilic archaeum that oxidized Fe2 + at neutral pH under anoxic conditions . Arch Microbiol , 166 : 308 – 314 .
  • Hall , T A . 1999 . BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98 NT . Nucl Acids Symp Ser , 41 : 95 – 98 .
  • Holden , J F , Summit , M and Baross , J A . 1998 . Thermophilic and hyperthermophilic microorganisms in 3–30°C hydrothermal fluids following a deep-sea volcanic eruption . FEMS Microbiol Ecol , 25 : 33 – 41 .
  • Horita , J , Ueda , A , Mizukami , K and Takatori , I . 1989 . Automatic δ D and δ18O analyses of multi-water samples using H2- and CO2-water equilibration methods with a common equilibration set-up . Appl Radiat Isotopes , 40 : 801 – 805 .
  • Huber , H , Jannasch , H , Rachel , R , Fuchs , T and Stetter , K O . 1997 . Archaeoglobus veneficus sp. nov., a novel facultative chemolithoautotrophic hyperthermophilic sulfite reducer, isolated from abyssal black smokers . Syst Appl Microbiol , 20 : 374 – 380 .
  • Huber , H and Stetter , K O . 2001 . “ Order I. Archaeoglobales ord. nov ” . In Bergey's Manual of Systematic Bacteriology. , 2nd ed , Edited by: Boone , D R and Castenholz , R W . 349 – 353 . New York/Berlin/ Heidelberg : Springer Verlag .
  • Hungate , R E . 1969 . “ A roll tube method for cultivation of strict anaerobe ” . In Methods in Microbiology , Edited by: Norris , J R and Ribbons , D W . 117 – 132 . London : Academic Press .
  • Huss , V AR , Festl , H and Schleifer , K H . 1983 . Studies on the spectrophotometric determination of DNA hybridization from renaturation rates . Syst Appl Microbiol , 4 : 184 – 192 .
  • Ignatiadis , I . . Origins of the increased dissolved sulfide concentrations noted in geothermal fluids at production wellheads in the south and east of the Paris basin . Proceedings of the International Symposium, Geothermics 94 in Europe, from Research to Development . February 8–9 1994 , Orleans, France. pp. 241 – 248 . BRGM editor
  • Ignatiadis , I , Abou Akar , A and Cotiche , C . . Analysis and consequences of bacterial proliferation in casings and reservoirs of geothermal doublets of the Paris Basin . Proceedings of the International Symposium, Eurocorr' 96 . September 24–26 1996 , Nice, France. pp. 1 – 4 . Session II: Microbial Corrosion
  • Ignatiadis , I , Amalhay , M , Abou Akar , A and Cotiche , C . 1998 . “ Analyse et conséquences de la prolifération bactérienne dans les puits géothermiques du Bassin de Paris ” . In Lemaître C, Pébère N, Festy D. editors. Biodétérioration des matériaux , 231 – 257 . Les Ulis, , France : EDP Sciences .
  • Jukes , T H and Cantor , C R . 1969 . “ Evolution of protein molecules ” . In Mammalian Protein Metabolism , Edited by: Munro , H N . 21 – 132 . New York : Academic Press .
  • Kashefi , K , Tor , J M , Holmes , D E , Gaw Van Praagh , C V , Reysenbach , A L and Lovley , D R . 2002 . Geoglobus ahangari gen. nov., sp. nov., a novel hyperthermophilic archaeon capable of oxidizing organic acids and growing autotrophically on hydrogen with Fe (III) serving as the sole electron acceptor . Int J Syst Evol Microbiol , 52 : 719 – 728 .
  • L'Haridon , S , Reysenbach , A L , Glénat , P , Prieur , D and Jeanthon , C . 1995 . Hot subterranean biosphere in a continental oil reservoir . Nature , 377 : 223 – 224 .
  • Laemmli , U K . 1970 . Cleavage of structural proteins during the assembly of the head of bacteriophage T4 . Nature , 227 : 680 – 685 .
  • Lowry , O HN , Rosebrough , N Y , Farr , A L and Randall , R J . 1951 . Protein measurement with the Folin phenol reagent . J Biol Chem , 193 : 265 – 275 .
  • Magot , M . 1996 . Similar bacteria in remote oil fields . Nature , 379 : 681
  • Magot , M , Ollivier , B and Patel , B KC . 2000 . Microbiology of petroleum reservoirs . Anton Leeuwenhoek , 77 : 103 – 116 .
  • Maidak , B L , Cole , J R , Lilburn , T G , Parker , C T , Saxman , P R , Farris , R J , Garrity , G M , Olsen , G J , Schmidt , T M and Tiedje , J M . 2001 . The RDP-II (Ribosomal Database Project) . Nucl Acids Res , 29 : 173 – 174 .
  • Marty , B , Criaud , A and Fouillac , C . 1988 . Low enthalpy geothermal fluids from the Paris Semimentary basin. 1. Characteristics and origin of gases . Geothermics , 17 ( 14 ) : 619 – 633 .
  • Matray , J M , Lambert , M and Fontes , J C . 1994 . Stable isotope conservation and origin of saline wates from the Middle Jurassic aquifer of the Paris Basin, France . Appl Geochem , 9 : 297 – 309 .
  • Ménez , B , Dupraz , S , Gérard , E , Guyot , F , Rommevaux Jestin , C , Libert , M , Jullien , M , Michel , C , Delorme , F , Battaglia-Brunet , F , Ignatiadis , I , Garcia , B , Blanchet , D , Huc , A-Y , Haeseler , F , Oger , P , Dromart , G , Ollivier , B and Magot , M . 2008 . Impact of the deep biosphere on CO2 storage performance . Geotechnol Sci Rep , 4 : 150 – 163 .
  • Miranda-Tello , E , Fardeau , M L , Fernandez , L , Ramirez , F , Cayol , J L , Thomas , P , Garcia , J L and Ollivier , B . 2003 . Desulfovibrio capillatus sp. nov., a novel sulfate-reducing bacterium isolated from an oil field separator located in the Gulf of Mexico . Anaerobe , 9 : 97 – 103 .
  • Ollivier , B and Cayol , J L . 2005 . “ Fermentative, iron-reducing, and nitrate-reducing microorganisms ” . In Petroleum Microbiology , Edited by: Ollivier , B and Magot , M . 71 – 88 . Washington, DC : ASM Press .
  • Orphan , V J , Taylor , L T , Hafenbradl , D and Delong , E F . 2000 . Culture-dependent and culture-independent characterization of microbial assemblages associated with high-temperature petroleum reservoirs . Appl Environ Microbiol , 66 : 700 – 711 .
  • Pedersen , K . 1993 . The deep subterranean biosphere . Earth-Sci Rev , 34 : 243 – 260 .
  • Reysenbach , A L . 2001 . “ Order 1. Thermotogales ord. nov. ” . In Bergey's Manual of Systematic Bacteriology, , 2nd ed , Edited by: Boone , D R and Castenholz , R W . 369 – 387 . New York/Berlin/Heidelberg : Springer Verlag .
  • Saitou , N and Nei , M . 1987 . The neighbor-joining method: a new method for reconstructing phylogenetic trees . Mol Biol Evol , 4 : 405 – 425 .
  • Sakai , H and Krouse , H R . 1971 . Elimination of memory effects in 18O-16O determination in sulfates . Earth Planet Sci Lett , 11 : 361 – 373 .
  • Satyanarayana1 , T , Raghukumar , C and Shivaji , S . 2005 . Extremophilic microbes: diversity and perspectives . Curr Sci , 89 : 78 – 90 .
  • Slobodkin , A I , Jeanthon , C , L'Haridon , S , Nazina , T , Miroshnichenko , M and Bonch-Osmolovskaya , E A . 1999a . Dissimilatory reduction of Fe(III) by thermophilic bacteria and archaea in deep subsurface petroleum reservoirs of Western Siberia . Curr Microbiol , 39 : 99 – 102 .
  • Slobodkin , A I , Tourova , T P , Kuznetsov , B B , Kostrikina , N A , Chernyh , N A and Bonch-Osmolovskaya , E A . 1999b . Thermoanaerobacter siderophilus sp. nov., a novel dissimilatory fe(III)-reducing, anaerobic thermophilic bacterium . Int J System Evol Microbiol , 49 : 1471 – 1478 .
  • Stetter , K O . 1988 . Archaeoglobus fulgidus gen. nov., sp. nov.: a new taxon of extremely thermophilic Archaebacteria . Syst Appl Microbiol , 10 : 172 – 173 .
  • Takahata , Y , Nishijima , M , Okay , T and Maruyama , T . 2001 . Thermotoga petrophila sp. nov., and Thermotoga naphthophila sp. nov., two hyperthermophilic bacteria from the Kubiki oil reservoir in Niigata, Japan . Int J Syst Evol Microbiol , 51 : 1901 – 1909 .
  • Thode , H G , Monster , J and Dunford , H B . 1961 . Sulfur isotope geochemistry . Geochim Cosmochim Acta , 25 : 50 – 174 .
  • Widdel , F . 1988 . “ Microbiology and ecology of sulfate- and sulfur-reducing bacteria ” . In Biology of Anaerobic Microorganisms , Edited by: Zehnder , A JB and Wiley , A JB . 469 – 585 . New York : Interscience .
  • Winker , S and Woese , C R . 1991 . A definition of the domains Archaea Bacteria Eucarya in terms of small subunit ribosomal RNA characteristics . Syst Appl Microbiol , 14 : 305 – 310 .
  • Zellner , G , Stackebrandt , E , Kneifel , H , Messner , P , Sleytr , U B , Conway de Macario , E , Zabel , H P , Stetter , K O and Winter , J . 1989 . Isolation and characterization of a thermophilic, sulfate reducing Archaebacterium, Archaeoglobus fulgidus Strain Z . Syst Appl Microbiol , 11 : 151 – 160 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.