Characterization of Depth-Related Microbial Community Activities in Freshwater Sediment by Combined Method

REFERENCES

• Barja , I and Núñez , L . 1999 . Microcalorimetric measurements of the influence of glucose concentration on microbial activity in soils . Soil Biol Biochem , 31 : 441 – 447 .
   Web of Science ®Google Scholar
• Barja , M I , Proupin , J and Núnez , L . 1997 . Microcalorimetric study of the effect of temperature on microbial activity in soils . Thermochim Acta , 303 : 155 – 159 .
   Web of Science ®Google Scholar
• Barros , N and Feijóo , S . 2003 . A combined mass and energy balance to provide bioindicators of soil microbiological quality . Biophys Chem , 104 : 561 – 572 .
   PubMed Web of Science ®Google Scholar
• Barros , N , Feijóo , S and Balsa , R . 1997 . Comparative study of the microbial activity in different soils by the microcalorimetric method . Thermochim Acta , 296 : 53 – 58 .
   Web of Science ®Google Scholar
• Barros , N , Feijóo , S , Fernández , S , Simoni , J A and Airoldi , C . 2000 . Application of the metabolic enthalpy change in studies of soil microbial activity . Thermochim Acta , 356 : 1 – 7 .
   Web of Science ®Google Scholar
• Barros , N , Feijóo , S , Simoni , A , Critter , S AM and Airoldi , C . 2001 . Interpretation of the metabolic enthalpy change, ΔHmet, calculated for microbial growth reactions in soils . J Therm Anal Calorim , 63 : 577 – 588 .
   Web of Science ®Google Scholar
• Barros , N , Feijóo , S , Simoni , J A , Prado , A GS , Barboza , F D and Airoldi , C . 1999 . Microcalorimetric study of some Amazonian soils . Thermochim Acta , 328 : 99 – 103 .
   Web of Science ®Google Scholar
• Barros , N , Salgado , J and Feijoo , S . 2006 . Calorimetry and soil . Thermochim Acta , 458 : 11 – 17 .
   Google Scholar
• Boström , B and Törnblom , E . 1990 . Bacterial production, heat production and ATP-turnover in shallow marine sediments . Thermochim Acta , 172 : 147 – 156 .
   Web of Science ®Google Scholar
• Bradstreet , R B . 1954 . Kjeldahl method for organic nitrogen . Anal Chem , 26 : 185 – 187 .
   Web of Science ®Google Scholar
• Critter , S AM , Freitas , S S and Airoldi , C . 2004a . Comparison of microbial activity in some Brazilian soils by microcalorimetric and respirometric methods . Thermochim Acta , 410 : 35 – 46 .
   Google Scholar
• Critter , S AM , Freitas , S S and Airoldi , C . 2004b . Microcalorimetric measurements of the metabolic activity by bacteria and fungi in some Brazilian soils amended with different organic matter . Thermochim Acta , 417 : 275 – 281 .
   Google Scholar
• Critter , S AM , Simoni , J D and Airoldi , C . 1994 . Microcalorimetric study of glucose degradation in some brazilian soils . Thermochim Acta , 232 : 145 – 154 .
   Google Scholar
• de Oliveira , AJFC , Hollnagel , H C , Mesquita , H DL and Fontes , R FC . 2007 . Physical, chemical and microbiological characterization of the intertidal sediments of Pereque Beach, Guaruja (SP), Brazil . Mar Pollut Bull , 54 : 921 – 927 .
   PubMedGoogle Scholar
• Dean , W E . 1999 . The carbon cycle and biogeochemical dynamics in lake sediments . J Paleolimnol , 21 : 375 – 393 .
   Web of Science ®Google Scholar
• Dietrich , D and Arndt , H . 2000 . Biomass partitioning of benthic microbes in a Baltic inlet: relationships between bacteria, algae, heterotrophic flagellates and ciliates . Mar Biol , 136 : 309 – 322 .
   Web of Science ®Google Scholar
• Fischer , H , Wanner , S C and Pusch , M . 2002 . Bacterial abundance and production in river sediments as related to the biochemical composition of particulate organic matter (POM) . Biogeochemistry , 61 : 37 – 55 .
   Google Scholar
• Hashimoto , M and Takahashi , K . 1982 . Calorimetric studies of microbial growth: Quantitative relation between growth thermograms and inoculum size . Agr Biol Chem Tokyo , 46 : 1559 – 1564 .
   Web of Science ®Google Scholar
• Hendricks , S P . 1996 . Bacterial biomass, activity, and production within the hyporheic zone of a north-temperate stream . Arch Hydrobiol , 136 : 467 – 487 .
   Google Scholar
• Inagaki , F , Nunoura , T , Nakagawa , S , Teske , A , Lever , M , Lauer , A , Suzuki , M , Takai , K , Delwiche , M , Colwell , F S , Nealson , K H , Horikoshi , K , D'Hondt , S and Jorgensen , B B . 2006 . Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments, on the Pacific Ocean Margin . Proc Natl Acad Sci USA , 103 : 2815 – 2820 .
   PubMed Web of Science ®Google Scholar
• Köster , M and Meyer-Reil , L A . 2001 . Characterization of carbon and microbial biomass pools in shallow water coastal sediments of the southern Baltic Sea, (Nordrugensche Bodden) . Mar Ecol-Prog Ser , 214 : 25 – 41 .
   Web of Science ®Google Scholar
• Kaiser , E A , Mueller , T , Joergensen , R G , Insam , H and Heinemeyer , O . 1992 . Evaluation of methods to estimate the soil microbial biomass and the relationship with soil texture and organic-matter . Soil Biol Biochem , 24 : 675 – 683 .
   Web of Science ®Google Scholar
• Kao , C M , Chen , S C , Liu , J K and Wang , Y S . 2001 . Application of microbial enumeration technique to evaluate the occurrence of natural bioremediation . Water Res , 35 : 1951 – 1960 .
   PubMedGoogle Scholar
• Kao , C M and Prosser , J . 1999 . Intrinsic bioremediation of trichloroethylene and chlorobenzene: field and laboratory studies . J Hazard Mater , 69 : 67 – 79 .
   PubMed Web of Science ®Google Scholar
• Kawabata , T , Yamano , H and Takahashi , K . 1983 . An attempt to characterize calorimetrically the inhibitory effect of foreign substances on microbial degradation of glucose in soil . Agr Biol Chem Tokyo , 47 : 1281 – 1288 .
   Web of Science ®Google Scholar
• Li , E H , Liu , G H , Li , W , Yuan , L Y and Li , S C . 2008 . The seed-bank of a lakeshore wetland in Lake Honghu: Implications for restoration . Plant Ecol , 195 : 69 – 76 .
   Web of Science ®Google Scholar
• Meyers , P A . 1994 . Preservation of elemental and isotopic source identification of sedimentary organic matter . Chem Geol , 114 : 289 – 302 .
   Web of Science ®Google Scholar
• Nuñez , L , Barros , N and Barja , I . 1994a . Effect of storage of soil at 4 degrees on the microbial activity studied by microcalorimetry . J Therm Anal , 41 : 1379 – 1383 .
   Google Scholar
• Nuñez , L , Barros , N and Barja , I . 1994b . A kinetic-analysis of the degradation of glucose by soil-microorganisms studied by microcalorimetry . Thermochim Acta , 237 : 73 – 81 .
   Google Scholar
• Nuñez , L , Nuñez-Fernandez , O , Anon , J AR and Castineiras , J P . 2002 . The influence of some physicochemical parameters on the microbial growth in soils . Thermochim Acta , 394 : 123 – 131 .
   Google Scholar
• Nunez-Regueira , L , Proupin-Castineiras , J , Rodriguez-Anon , J A , Villanueva-Lopez , M and Nunez-Fernandez , O . 2006 . Design of an experimental procedure to assess soil health state . J Therm Anal Calorim , 85 : 271 – 277 .
   Google Scholar
• Pamatmat , M M , Graf , G , Bengtsson , W and Novak , C S . 1981 . Heat production, ATP concentration and electron transport activity of marine sediments . Mar Ecol-Prog Ser , 6 : 135 – 143 .
   Google Scholar
• Shatalin , K , Gusarov , I , Avetissova , E , Shatalina , Y , McQuade , L E , Lippard , S J and Nudler , E . 2008 . Bacillus anthracis-derived nitric oxide is essential for pathogen virulence and survival in macrophages . Proc Natl Acad Sci USA , 105 : 1009 – 1013 .
   PubMed Web of Science ®Google Scholar
• Tong , Y , Lin , G F , Ke , X , Liu , F P , Zhu , G W , Gao , G and Shen , J H . 2005 . Comparison of microbial community between two shallow freshwater lakes in middle Yangtze basin, East China . Chemosphere , 60 : 85 – 92 .
   PubMed Web of Science ®Google Scholar
• Torsvik , V , Ovreas , L and Thingstad , T F . 2002 . Prokaryotic diversity — Magnitude, dynamics, and controlling factors . Science , 296 : 1064 – 1066 .
   PubMed Web of Science ®Google Scholar
• Walter , E and Dean , J R . 1974 . Determinatin of carbonate and organic matter in calcareous sediments and sedimentary rocks by loss on ignition: comparison with other methods . J Sediment Petrol , 44 : 242 – 248 .
   Google Scholar
• Yamano , H and Takahashi , K . 1983 . Temperature effect on the activity of soil microbes measured from heat evolution during the degradation of several carbon sources . Agr Biol Chem Tokyo , 47 : 1493 – 1499 .
   Web of Science ®Google Scholar
• Yamano , H and Takahashi , K . 1986 . Computer analysis of kinetic data for microbial growth thermograms observed with a batch calorimeter . Agr Biol Chem Tokyo , 50 : 3157 – 3164 .
   Web of Science ®Google Scholar
• Yin , H F , Liu , G R , Pi , J G , Chen , G J and Li , C A . 2007 . On the river-lake relationship of the middle Yangtze reaches . Geomorphology , 85 : 197 – 207 .
   Web of Science ®Google Scholar