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Book Reviews

Further Readings in Geomicrobiology

Pages 380-381 | Published online: 27 May 2011

References

  • Alvarez , L , Bricio , C , Gómez , M J and Berenguer , J . 2011 . Lateral transfer of the denitrification pathway genes among Thermus thermophilus strains . Appl Environ Microbiol , 77 : 1352 – 1358 .
  • Andree , K B , Fernández-Tejedor , M , Elandaloussi , L M , Quijano-Scheggia , S , Sampedro , N , Garcés , E , Camp , J and Diogène , J . 2011 . Quantitative PCR coupled with melt curve analysis for detection of selected Pseudonitzschia spp. (Bacillariophyceae) from the northwestern Mediterranean Sea . Appl Environ Microbiol , 77 : 1651 – 1659 .
  • Bastviken , D , Tranvik , L J , Downing , J A , Crill , P M and Enrich-Prast , A . 2011 . Freshwater methane emissions offset the continental carbon sink . Science , 331 : 50
  • Bates , S T , Cropsey , G WG , Caporaso , J G , Knight , R and Fierer , N . 2011 . Bacterial communities associated with the lichen symbiosis . Appl Environ Microbiol , 77 : 1309 – 1314 .
  • Brown , J F , Jones , D S , Mills , D B , Macalady , J L and Burgos , W D . 2011 . Application of a depositional facies model to an acid mine drainage site . Appl Environ Microbiol , 77 : 545 – 554 .
  • Burrows , LL. 2011 . Mass spectrometry unmasks mystery Methanococcus pilin . J Bacteriol , 193 : 801 – 803 .
  • Charpentier , D , Buatier , M D , Jacquot , E , Gaudin , A and Wheat , C G . 2011 . Conditions and mechanisms for the formation of iron-rich montmorillonite in deep sea sediments (Costa Rica margin): Coupling high resolution mineralogical characterization and geochemical modeling . Geochim Cosmochim Acta , 75 : 1397 – 1410 .
  • Conrad , R and Klose , M . 2011 . Stable carbon isotope discrimination in rice field soil during acetate turnover by syntrophic acetate oxidation or acetoclastic methanogenesis . Geochim Cosmochim Acta , 75 : 1531 – 1539 .
  • Crabbé , A , Schurr , M J , Monsieurs , P , Morici , L , Schurr , J , Wilson , J W , Ott , C M , Tsaprailis , G , Pierson , D L , Stefanyshyn-Piper , H and Nickerson , C A . 2011 . Transcriptional and proteomic responses of Pseudomonas aeruginosa PAO1 to spaceflight conditions involve Hfq regulation and reveal a role for oxygen . Appl Environ Microbiol , 77 : 1221 – 1230 .
  • Delmont , T O , Robe , P , Cecillon , S , Clark , I M , Constancias , F , Simonet , P , Hirsch , P R and Vogel , T M . 2011 . Accessing the soil metagenome for studies of microbial diversity . Appl Environ Microbiol , 77 : 1315 – 1324 .
  • Dohnalkova , A C , Marshall , M J , Arey , B W , Williams , K H , Buck , E C and Fredrickson , J K . 2011 . Imaging hydrated microbial extracellular polymers: Comparative analysis by electron microscopy . Appl Environ Microbiol , 77 : 1254 – 1262 .
  • Eichorst , S A , Kuske , C R and Schmidt , T M . 2011 . Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria . Appl Environ Microbiol , 77 : 586 – 596 .
  • Ensign , SA. 2011 . Another microbial pathway for acetate assimilation . Science , 331 : 294 – 295 .
  • Estelmann , S , Hügler , M , Eisenreich , W , Werner , K , Berg , I A , Ramos-Vera , W H , Say , R F , Kockelkorn , D , Gad'on , N and Fuchs , G . 2011 . Labeling and enzyme studies of the central carbon metabolism in Metallosphaera sedula . J Bacteriol , 193 : 1191 – 1200 .
  • Fan , L , Bo , S , Chen , H , Ye , W , Kleinschmidt , K , Baumann , H I , Imhoff , J F , Kleine , M and Cai , D . 2011 . Genome sequence of Bacillus subtilis subsp. spizizenii gtP2b, isolated from the Indian Ocean . J Bacteriol , 193 : 1276 – 1277 .
  • Feisthauer , S , Vogt , C , Modrzynski , J , Szlenkier , M , Krüger , M , Siegert , M and Richnow , H-H . 2011 . Different types of methane monooxygenases produce similar carbon and hydrogen isotope fractionation patterns during methane oxidation . Geochim Cosmochim Acta , 75 : 1173 – 1184 .
  • Flury , S and Gessner , M O . 2011 . Experimentally simulated global warming and nitrogen enrichment effects on microbial litter decomposers in a marsh . Appl Environ Microbiol , 77 : 803 – 809 .
  • Gandois , L , Perrin , A-S and Probst , A . 2011 . Impact of nitrogenous fertilizer-induced proton release on cultivated soils with contrasting carbonate content: A column experiment . Geochim Cosmochim Acta , 75 : 1185 – 1198 .
  • Grass , G , Rensing , C and Solioz , M . 2011 . Metallic copper as an antimicrobial surface . Appl Environ Microbiol , 77 : 1541 – 1547 .
  • Herrmann , M , Scheibe , A , Avrahami , S and Küsel , K . 2011 . Ammonium availability affects the ratio of ammonia-oxidizing Archaea in simulated creek ecosystems . Appl Environ Microbiol , 77 : 1896 – 1899 .
  • Hildenbrand , C , Stock , T , Lange , C , Rother , M and Soppa , J . 2011 . Genome copy numbers and gene conversion in methanogenic Archaea . J. Bacteriol , 193 : 734 – 743 .
  • Howard , E C , Sun , S , Reisch , C R , del Valle , D A , Bürgmann , H , Kiene , R P and Moran , M A . 2011 . Changes in dimethylsulfoniopropionate demethylase gene assemblages in response to an induced phytoplankton bloom . Appl Environ Microbiol , 77 : 524 – 531 .
  • Hu , B-l , Rush , D , Van Der Biezen , W , Zheng , P , van Mullekom , M , Schouten , S , Sinninghe Damsté , J S , Smolders , A JP , Jetten , M SM and Kartal , B . 2011 . New anaerobic, ammonium-oxidizing community enriched from peat soil . Appl Environ Microbiol , 77 : 966 – 971 .
  • Joshua , C J , Dahl , R , Benke , P I and Keasling , J D . 2011 . Absence of diauxie during simultaneous utilization of glucose and xylose by Sulfolobus acidocaldarius . J Bacteriol , 193 : 1293 – 1301 .
  • Jung , S and Regan , J M . 2011 . Influence of external resistance on electrogenesis, methanogenesis, and anode prokaryotic communities in microbial fuel cells . Appl Environ Microbiol , 77 : 564 – 571 .
  • Kessler , J D , Valentine , D L , Redmond , M C , Du , M , Chan , E W , Mendes , S D , Quiroz , E W , Villanueva , C J , Shusta , S S , Werra , L M , Yvon-Lewis , S A and Weber , T C . 2011 . A persistent oxygen anomaly reveals the fate of spilled methane in the deep Gulf of Mexico . Science , 331 : 312 – 315 .
  • Khomyakova , M , Bükmez , Ö , Thomas , L K , Erb , T J and Berg , I A . 2011 . A methylaspartate cycle in Haloarachaea . Science , 331 : 334 – 337 .
  • Knoll , AH. 2011 . The deep history of life . Microbe , 6 : 75 – 78 .
  • Kozubal , M A , Dlaki , M , Macur , R E and Innskeep , W P . 2011 . Terminal oxidase diversity and function in “Metallosphaera yellowstonensis”: Gene expression and protein modeling suggest mechanisms of Fe(II) oxidation in the Sulfolobales . Appl Environ Microbiol , 77 : 1844 – 1853 .
  • Lewis , S L , Brando , P M , Phillips , O L , Van Der Heijden , G MF and Nepstad , D . 2011 . The 2010 Amazon drought . Science , 331 : 554
  • Liu , D , Dong , H , Bishop , M E , Wang , H , Agrawal , A , Tritschler , S , Ebert , D D and Xie , S . 2011 . Reduction of structural Fe(III) in nontronite by methanogen Methanosarcina bakeri . Geochim Cosmochim Acta , 75 : 1057 – 1071 .
  • Magnuson , TS. 2011 . Commentary. How the xap locus put electrical “zap” in Geobacter sulfurreducens biofilms . J Bacteriol , 193 : 1021 – 1022 .
  • McBeth , J M , Little , B J , Ray , R I , Farrar , K M and Emerson , D . 2011 . Neutrophilic iron-oxidizing “Zetaproteobacteria” and mild steel corrosion in nearshore marine environments . Appl Environ Microbiol , 77 : 1405 – 1412 .
  • McLoon , A L , Koldkin-Gal , I , Rubinstein , S M , Kolter , R and Losick , R . 2011 . Spatial regulation of histidine kinases governing biofilm formation in Bacillus subtilis . J Bacteriol , 193 : 679 – 685 .
  • Melendrez , M C , Lange , R K , Cohan , F M and Ward , D M . 2011 . Influence of molecular resolution on sequence-based discovery of ecological diversity among Synechococcus populations in an alkaline hot spring microbial mat . Appl Environ Microbiol , 77 : 1359 – 1367 .
  • Michaelidou , U , ter Heijne , A , Euverink , G JW , Hamelers , H VM , Stams , A JM and Geelhoed , J S . 2011 . Microbial communities and electrochemical performance of titanium-based anodic electrodes in a microbial fuel cell . Appl Environ Microbiol , 77 : 1069 – 1075 .
  • Mulet , M , David , Z , Nogales , B , Bosch , R , Lalucat , J and García-Valdés , E . 2011 . Pseudomonas diversity in crude-oil-contaminated intertidal sand samples obtained after the Prestige oil spill . Appl Environ Microbiol , 77 : 1076 – 1085 .
  • Murugappan , R M , Aravinth , A and Karthikeyan , M . 2011 . Chemical and structural characterization of hydroxamate siderophore produced by marine Vibrio harveyi . J Industr Microbiol Biotech , 38 : 265 – 273 .
  • Navarrete , J U , Borrok , D M , Viveros , M and Ellzey , J T . 2011 . Copper isotope fraction during surface adsorption and intracellular incorporation by bacteria . Geochim Cosmochim Acta , 75 : 784 – 799 .
  • Ng , S YM , Wu , J , Nair , D B , Logan , S M , Robotham , A L , Kelly , J F , Uchida , K , Aizawa , S-I and Jarrell , K F . 2011 . Genetic and mass spectrometry analyses of the unusual type IV-like pili of the archaeon Methanococcus maripaludis . J Bacteriol , 193 : 804 – 814 .
  • Orr , C H , James , A , Leifert , C , Cooper , J M and Cummings , S P . 2011 . Diversity and activity of free-living nitrogen-fixing bacteria and total bacteria in organic and conventionally managed soils . Appl Environ Microbiol , 77 : 911 – 919 .
  • Piccolo , L L , De Pasquale , C , Fodale , R , Puglia , A M and Quatrini , P . 2011 . Involvement of an alkane hydroxylase system of Gordonia sp. strain SoCg in degradation of solid N-alkanes . Appl Environ Microbiol , 77 : 1204 – 1213 .
  • Quaranta , D , Krans , T , Santo , C E , Elowsky , C G , Domaille , D W , Chang , C G and Grass , G . 2011 . Mechanisms of contact-mediated killing of yeast cells on dry metallic copper surfaces . Appl Environ Microbiol , 77 : 416 – 426 .
  • Rabl , J , Leibundgut , M , Ataide , S F , Haag , A and Ban , N . 2011 . Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1 . Science , 331 : 730 – 736 .
  • Ramakrishnan , V. 2011 . The eukaryotic ribosome . Science , 331 : 681 – 682 .
  • Ramos-Vera , W H , Weiss , M , Strittmatter , E , Kockelkorn , D and Fuchs , G . 2011 . Identification of missing genes and enzymes for autotrophic carbon fixation in Crenarchaeota . J Bacteriol , 193 : 1201 – 1211 .
  • Rollefson , J B , Stephen , C S , Tien , M and Bond , D R . 2011 . Identification of an extracellular polysaccharide network essential for cytochrome anchoring and biofilm formation in Geobacter sulfurreducens . J Bacteriol , 193 : 1023 – 1033 .
  • Rush , D , Jaeschke , A , Hopmans , E C , Geenevasen , J AJ , Schouten , S and Sinnighe Damsté , J S . 2011 . Short chain ladderanes: Oxic biodegradation products of anammox lipids . Geochim Cosmochim Acta , 75 : 1662 – 1671 .
  • Santo , C E , Lam , E W , Elowsky , C G , Quaranta , F , Domaille , D W , Chang , C J and Grass , G . 2011 . Bacterial killing by dry metallic copper surfaces . Appl Environ Microbiol , 77 : 794 – 802 .
  • Schicklberger , M , Bücking , C , Schuetz , B , Heide , H and Gescher , J . 2011 . Involvement of the Shewanella oneidensis decaheme cytochrome MtrA in the periplasmic stability of the β-barrel protein MtrB . Appl Environ Microbiol , 77 : 1520 – 1523 .
  • Simon , C and Daniel , R . 2011 . Metagenomic analyses: Past and future trends . Appl Environ Microbiol , 77 : 1153 – 1161 .
  • Sønstebø , J H and Rohrlack , T . 2011 . Possible implications of chytrid parasitism for population subdivision in freshwater cyanobacteria of the genus Planktothrix . Appl Environ Microbiol , 77 : 1344 – 1351 .
  • Steger , D , Wentrup , C , Braunegger , C , Deevong , P , Hofer , M , Richter , A , Baranyi , C , Pester , M , Wagner , M and Loy , A . 2011 . Microorganisms with novel dissimilatory (bi)sulfite reductase genes are widespread and part of the core microbiota in low-sulfate peatlands . Appl Environ Microbiol , 77 : 1231 – 1242 .
  • Strnad , H , Ridl , J , Paces , J , Kolar , M , Vicek , C and Paces , V . 2011 . Complete genome sequence of the haloaromatic acid-degrading bacterium Achromobacter xylosoxidans AB . J Bacteriol , 193 : 791 – 792 .
  • tenBrink , F , Schink , B and Kroneck , P MH . 2011 . Exploring the active site of the tungsten, iron-sulfur enzyme acetylene hydratase . J Bacteriol , 193 : 1229 – 1236 .
  • Thornalley , D JR , Barker , S , Broecker , W S , Elderfield , H and McCave , I N . 2011 . The deglacial evolution of North Atlantic deep convection . Science , 331 : 202 – 205 .
  • Vannier , P , Marteinsson , V T , Fridjonsson , O H , Oger , P and Jebbar , M . 2011 . Complete genome sequence of the hyperthermophilic, piezophilic, heterotrophic, and carboxydotrophic archaeon Thermococcus barophilus MP . J Bacteriol , 193 : 1481 – 1482 .
  • Wen , H and Carignan , J . 2011 . Selenium isotopes trace the source and redox processes in the black shale-hosted Se-rich deposits in China . Geochim Cosmochim Acta , 75 : 1411 – 1427 .
  • Wilmes , B , Kock , H K , Glagla , S , Albrecht , D , Voigt , B , Markert , S , Gardebrecht , A , Bode , R , Danchin , A , Feller , G , Hecker , M and Schweder , T . 2011 . Cytoplasmic and periplasmic proteomic signatures of exponentially growing cells of the psychrophilic bacterium Pseudoalteromonas haloplanktis TAC125 . Appl Environ Microbiol , 77 : 1276 – 1283 .
  • Wirth , R , Bellack , A , Berti , M , Bilek , Y , Heimeri , T , Herzog , B , Leisner , M , Probst , A , Rachel , R , Sarbu , C , Schopf , S and Wanner , G . 2011 . The mode of cell wall growth in selected Archaea is similar to the general mode of cell wall growth in bacteria as revealed by fluorescent dye analysis . Appl Environ Microbiol , 77 : 1556 – 1562 .
  • Wu , S-Y and Lai , M-C . 2011 . Methanogenic archaea isolated from Taiwan's Chelungpu Fault . Appl Environ Microbiol , 77 : 830 – 838 .
  • Xie , J , He , Z , Liu , Xinxing , Liu , Xueduan , Van Nostrand , J D , Deng , Y , Wu , L , Zhou , J and Qiu , G . 2011 . GeoChip-based analysis of the functional gene diversity and metabolic potential of microbial communities in acid mine drainage . Appl Environ Microbiol , 77 : 991 – 999 .
  • Xiong , X-h , Zhi , J-J , Yang , L , Wang , J-h , Zhao , Y , Wang , X , Cui , Y-J , Dong , F , Li , M-X , Yang , Y-X , Wei , N , An , J-j , Du , B-H , Liang , L , Zhang , J-S , Zhu , W , Cheng , S-F , He , T , Wang , L , Chen , H-P , Liu , D-S and Zhang , W-c . 2011 . Complete genome sequence of the bacterium Methylovorus sp. strain MP688, a high-level producer of pyrroloquinolone quinone . J Bacteriol , 193 : 1012 – 1013 .
  • Yamaguchi , N , Torii , M , Uebayashi , Y and Nasu , M . 2011 . Rapid, semiautomated quantification of bacterial cells in freshwater by using a microfluidic device for on-chip staining and counting . Appl Environ Microbiol , 77 : 1536 – 1539 .
  • Zippel , B and Neu , T R . 2011 . Characterization of glycoconjugates of extracellular polymeric stubstances in tufa-associated biofilms by using fluorescence lectin-binding analysis . Appl Environ Microbiol , 77 : 505 – 516 .

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