Analysis of Genes and Proteins in Acidithiobacillus ferrooxidans During Growth and Attachment on Pyrite Under Different Conditions

References

• Abbaspour , A , Mehrgardi , M A , Noori , A , Kamyabi , M A , Khalafi-Nezhad , A and Rad , M NS . 2006 . Speciation of iron(II), iron(III) and full-range pH monitoring using paptode: A simple colorimetric method as an appropriate alternative for optodes . Sens Actuat B-Chem , 113 ( 2 ) : 857 – 865 .
   Web of Science ®Google Scholar
• Allison , DG. , Ruiz , B , San Jose , C , Jaspe , A and Gilbert , P. 1998 . Extracellular products as mediators of the formation and detachment of Pseudomonas fluorescens biofilms . FEMS Microbiol Lett , 167 ( 2 ) : 179 – 184 .
   PubMed Web of Science ®Google Scholar
• Bechet , M and Blondeau , R . 2003 . Factors associated with the adherence and biofilm formation by Aeromonas caviae on glass surfaces . J Appl Microbiol , 94 ( 6 ) : 1072 – 1078 .
   PubMed Web of Science ®Google Scholar
• Blake , R C , Shute , E A and Howard , G T . 1994 . Solubilization of minerals by Bacteria - electrophoretic mobility of Thiobacillus-Ferrooxidans in the presence of iron, pyrite, and sulfur . Appl Environ Microbiol , 60 ( 9 ) : 3349 – 3357 .
   PubMed Web of Science ®Google Scholar
• Bouchal , P , Zdrahal , Z , Helanova , S , Janiczek , O , Hallberg , K B and Mandl , M . 2006 . Proteomic and bioinformatic analysis of iron- and sulfur-oxidizing Acidithiobacillus ferrooxidans using immobilized pH gradients and mass spectrometry . Proteomics , 6 ( 15 ) : 4278 – 4285 .
   PubMed Web of Science ®Google Scholar
• Chi , A , Valenzuela , L , Beard , S , Mackey , A J , Shabanowitz , J , Hunt , D F and Jerez , C A . 2007 . Periplasmic proteins of the extremophile Acidithiobacillus ferrooxidans . Mol Cell Proteom , 6 ( 12 ) : 2239 – 2251 .
   PubMed Web of Science ®Google Scholar
• Craig , L and Li , J . 2008 . Type IV pilli: paradoxes in form and function . Curr Opin Struct Biol , 18 ( 2 ) : 267 – 277 .
   PubMed Web of Science ®Google Scholar
• Cramton , S E , Gerke , C , Schnell , N F , Nichols , W W and Gotz , F . 1999 . The intercellular adhesion (ica) locus is present in Staphylococcus aureus and is required for biofilm formation . Infect Immun , 67 ( 10 ) : 5427 – 5433 .
   PubMed Web of Science ®Google Scholar
• Curutchet , G and Donati , E . 2000 . Iron-oxidizing and leaching activities of sulphur-grown Thiobacillus ferrooxidans cells on other substrates: Effect of culture pH . J Biosci Bioeng , 90 ( 1 ) : 57 – 61 .
   PubMed Web of Science ®Google Scholar
• Das , S , Shraga , D , Gannon , C , Lam , T T , Feng , S , Brunet , L R , Telford , S R , Barthold , S W , Flavell , R A and Fikrig , E . 1996 . Characterization of a 30-kDa Borrelia burgdorferi substrate-binding protein homologue . Res Microbiol , 147 ( 9 ) : 739 – 751 .
   PubMed Web of Science ®Google Scholar
• Diggle , S P , Crusz , S A and Camara , M . 2007 . Quorum sensing . Curr Biol , 17 ( 21 ) : R907 – R910 .
   PubMed Web of Science ®Google Scholar
• Dunne , WM. 2002 . Bacterial adhesion: Seen any good biofilms lately? . Clin Microbiol Rev , 15 ( 2 ) : 155 – 164 .
   PubMed Web of Science ®Google Scholar
• Escobar , B , Bustos , K , Morales , G and Salazar , O . 2008 . Rapid and specific detection of Acidithiobacillus ferrooxidans and Leptospirillum ferrooxidans by PCR . Hydrometallurgy , 92 ( 3–4 ) : 102 – 106 .
   Web of Science ®Google Scholar
• Flemming , H C and Wingender , J . 2010 . The biofilm matrix . Nat Rev Microbiol , 8 ( 9 ) : 623 – 633 .
   PubMed Web of Science ®Google Scholar
• Ghauri , M A , Okibe , N and Johnson , D B . 2007 . Attachment of acidophilic bacteria to solid surfaces: The significance of species and strain variations . Hydrometallurgy , 85 ( 2–4 ) : 72 – 80 .
   Web of Science ®Google Scholar
• Heilmann , C , Gerke , C , Perdreau-Remington , F and Götz , F . 1996 . Characterization of Tn917 insertion mutants of Staphylococcus epidermidis affected in biofilm formation . Infect Immun , 64 : 277 – 282 .
   PubMed Web of Science ®Google Scholar
• Jahn , CE. , Charkowski , A O and Willis , DK. 2008 . Evaluation of isolation methods and RNA integrity for bacterial RNA quantitation . J Microbiol Meth , 75 ( 2 ) : 318 – 324 .
   PubMed Web of Science ®Google Scholar
• Johnson , DB. 2001 . Importance of microbial ecology in the development of new mineral technologies . Hydrometallurgy , 59 ( 2–3 ) : 147 – 157 .
   Web of Science ®Google Scholar
• Kearns , DB. 2010 . A field guide to bacterial swarming motility . Nat Rev Microbiol , 8 ( 9 ) : 634 – 644 .
   PubMed Web of Science ®Google Scholar
• Kinzler , K , Gehrke , T , Telegdi , J and Sand , W . 2003 . Bioleaching—A result of interfacial processes caused by extracellular polymeric substances (EPS) . Hydrometallurgy , 71 ( 1–2 ) : 83 – 88 .
   Web of Science ®Google Scholar
• Kolthoff , I M , Leussing , D L and Lee , T S . 1950 . Reaction of ferrous and ferric iron with 1,10-phenanthroline. 3. The ferrous monophenanthroline complex and the colorimetric determination of phenanthroline . J Amer Chem Soc , 72 ( 5 ) : 2173 – 2177 .
   Web of Science ®Google Scholar
• Kupka , D , Rzhepishevska , O I , Dopson , M , Lindstrom , E B , Karnachuk , O V and Tuovinen , H . 2007 . Bacterial oxidation of ferrous iron at low temperatures . Biotechnol Bioeng , 97 ( 6 ) : 1470 – 1478 .
   PubMed Web of Science ®Google Scholar
• Mack , D , Nedelmann , M , Krokotsch , A , Schwarzkopf , A , Heesemann , J and Laufs , A R . 1994 . Characterization of transposon mutants of biofilm producing Staphylococcus epidermidis impaired in the accumulative phase of biofilm production: genetic dentification of a hexosamine containing polysaccharide intercellular adhesin . Infect Immun , 62 : 3244 – 3253 .
   PubMed Web of Science ®Google Scholar
• Mack , D , Siemssen , N and Laufs , R . 1992 . Parallel induction by glucose of adherence and a polysaccharide antigen specific for plastic-adherent Staphylococcus epidermidis: evidence for functional relation to intercellular adhesion . Infect Immun , 60 : 2048 – 2057 .
   PubMed Web of Science ®Google Scholar
• Mansfeldt , T , Leyer , H , Barmettler , K and Kretzschmar , R . 2004 . Cyanide leaching from soil developed from coking plant purifier waste as influenced by citrate . Vadose Zone J , 3 ( 2 ) : 471 – 479 .
   Web of Science ®Google Scholar
• Nedelkova , M , Merroun , M L , Rossberg , A , Hennig , C and Selenska-Pobell , S . 2007 . Microbacterium isolates from the vicinity of a radioactive waste depository and their interactions with uranium . FEMS Microbiol Ecol , 59 ( 3 ) : 694 – 705 .
   PubMed Web of Science ®Google Scholar
• Nunez-del Arco , A , Salas-Tellez , E , de la Garza , M , Diaz-Aparicio , E and Tenorio-Gutierrez , V . 2006 . Identification of an immunogenic protein of Actinobacillus seminis that is present in microvesicles . Can J Veterin Res-Revue Canad Recher Veterin , 70 ( 1 ) : 43 – 49 .
   PubMed Web of Science ®Google Scholar
• O’Toole , G , Kaplan , H B and Kolter , R . 2000 . Biofilm formation as microbial development . Ann Rev Microbiol , 54 : 49 – 79 .
   PubMed Web of Science ®Google Scholar
• O’Toole , G A and Kolter , R . 1998 . Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development . Mol Microbiol , 30 ( 2 ) : 295 – 304 .
   PubMed Web of Science ®Google Scholar
• Puskas , A , Greenberg , E P , Kaplan , S and Schaeffer , A L . 1997 . A quorum-sensing system in the free-living photosynthetic bacterium Rhodobacter sphaeroides . J Bacteriol , 179 ( 23 ) : 7530 – 7537 .
   PubMed Web of Science ®Google Scholar
• Rivas , M , Seeger , M , Holmes , D S and Jedlicki , E . 2005 . A lux-like quorum sensing system in the extreme acidophile Acidithiobacillus ferrooxidans . Biol Res , 38 ( 2–3 ) : 283 – 297 .
   PubMed Web of Science ®Google Scholar
• Sahu , S N , Acharya , S , Tuminaro , H , Patel , I , Dudley , K , LeClerc , J E , Cebula , T A and Mukhopadhyay , S . 2003 . The bacterial adaptive response gene, barA, encodes a novel conserved histidine kinase regulatory switch for adaptation and modulation of metabolism in Escherichia coli . Mol Cell Biochem , 253 ( 1–2 ) : 167 – 177 .
   PubMed Web of Science ®Google Scholar
• Sakai , D , Horiuchi , T and Komano , T . 2001 . ATPase activity and multimer formation of PilQ protein are required for thin pilus biogenesis in plasmid R64 . J Biol Chem , 276 ( 21 ) : 17968 – 17975 .
   PubMed Web of Science ®Google Scholar
• Sanhueza , A , Ferrer , I J , Vargas , T , Amils , A and Sanchez , C . 1999 . Attachment of Thiobacillus ferrooxidans on synthetic pyrite of varying structural and electronic properties . Hydrometallurgy , 51 ( 1 ) : 115 – 129 .
   Web of Science ®Google Scholar
• Sauer , K , Camper , A K , Ehrlich , G D , Costerton , J W and Davies , D G . 2002 . Pseudomonas aeruginosa displays multiple phenotypes during development as a biofilm . J Bacteriol , 184 ( 4 ) : 1140 – 1154 .
   PubMed Web of Science ®Google Scholar
• Scott , J R and Zahner , D . 2006 . Pili with strong attachments: Gram-positive bacteria do it differently . Mol Microbiol , 62 ( 2 ) : 320 – 330 .
   PubMed Web of Science ®Google Scholar
• Shevchenko , A , Wilm , M , Vorm , O and Mann , M . 1996 . Mass spectrometric sequencing of proteins from silver stained polyacrylamide gels . Anal Chem , 68 ( 5 ) : 850 – 858 .
   PubMed Web of Science ®Google Scholar
• Silverman , M P and Lundgren , D G . 1959 . Studies on the chemoautotrophic iron bacterium Ferrobacillus-Ferrooxidans. 1. An improved medium and a harvesting procedure for securing high cell yields . J Bacteriol , 77 ( 5 ) : 642 – 647 .
   PubMed Web of Science ®Google Scholar
• Stoodley , P , Sauer , K , Davies , D G and Costerton , J W . 2002 . Biofilms as complex differentiated communities . Ann Rev Microbiol , 56 : 187 – 209 .
   PubMed Web of Science ®Google Scholar
• Valdes , J , Pedroso , I , Quatrini , R , Dodson , R J , Tettelin , H , Blake , R , Eisen , J A and Holmes , D S . 2008 . Acidithiobacillus ferrooxidans metabolism: From genome sequence to industrial applications . Bmc Genomics , 9 : 597
   PubMed Web of Science ®Google Scholar
• Vale , R D . 2000 . Aaa proteins lords of the ring . J Cell Biol , 150 : F13 – F20 .
   PubMed Web of Science ®Google Scholar
• Varshney , A K , Chaudhry , R , Kabra , S K and Malhotra , P . 2008 . Cloning, expression, and immunological characterization of the P30 protein of Mycoplasma pneumoniae . Clin Vacc Immunol , 15 ( 2 ) : 215 – 220 .
   PubMed Web of Science ®Google Scholar
• Whittaker , C A and Hynes , R O . 2002 . Distribution and evolution of von Willebrand/integrin A domains: widely dispersed domains with roles in cell adhesion and elsewhere . Mol Biol Cell , 13 ( 10 ) : 3369 – 3387 .
   PubMed Web of Science ®Google Scholar
• Wu , J , Wang , F Q , Gong , Y , Li , D M , Sha , J H , Huang , X Y and Han , X D . 2009 . Proteomic analysis of changes induced by nonylphenol in Sprague-Dawley rat sertoli cells . Chem Res Toxicol , 22 ( 4 ) : 668 – 675 .
   PubMed Web of Science ®Google Scholar
• Zogaj , X , Nimtz , M , Rohde , M , Bokranz , W and Romling , U . 2001 . The multicellular morphotypes of Salmonella typhimurium and Escherichia coli produce cellulose as the second component of the extracellular matrix . Mol Microbiol , 39 ( 6 ) : 1452 – 1463 .
   PubMed Web of Science ®Google Scholar