Further Readings in Geomicrobiology

References

• Brutinel , E D and Gralnick , J A . 2012 . Preferential utilization of D-lactate by Shewanella oneidensis . Appl Environ Microbiol , 78 : 8474 – 8476 .
   PubMed Web of Science ®Google Scholar
• Chen , S , Wang , C , Zhao , Z and Yang , Z L . 2012 . Genome sequence of Halorubrum sp. strain T3, an extremely halophilic archeon harboring a virus-like element . J Bacteriol , 194 : 6608 – 6609 .
   PubMed Web of Science ®Google Scholar
• Carneiro , A R , Ramos , R TJ , Dall’Agnol , H , Pinto , A C , de Castro Soares , S , Santo , A R , Guimarães , L C , Almeida , S S , Baraúna , A , das Graças , D A , Franco , L C , Ali , A , Hassan , S S , Nunes , C IP , Barbosa , M S , Fiaux , K K , Aburjaile , F F , Barbosa , E GV , Bakhtiar , S M , Vilela , D , Nóbrega , F , dos Santos , A L , Carepo , S P , Azevedo , V , Schneider , M PC , Pellizari , V H and Silva , A . 2012 . Genome sequence of Exiguobacterium antarcticum B7, isolated from a biofilm in Ginger Lake, King George Island, Antarctica . J Bacteriol , 194 : 6689 – 6690 .
   PubMed Web of Science ®Google Scholar
• Cregger , M A , Schadt , C W , McDowell , N G , Pockman , W T and Classen , A T . 2012 . Response of the soil microbial community to changes in precipitation in a semiarid ecosystem . Appl Environ Microbiol , 78 : 8587 – 8594 .
   PubMed Web of Science ®Google Scholar
• Feng , S , Yang , H , Xin , Y , Zhang , L , Kang , W and Wang , W . 2012 . Isolation of an extremely acidophilic and highly efficient strain of Acidothiobacillus sp. for chalcopyrite bioleaching . J. Industr Microbiol Biotechnol , 39 : 1625 – 1635 .
   PubMed Web of Science ®Google Scholar
• Gonzaga , A , López-Pérez , M , Martin-Cuadrado , A-B , Ghai , R and Rodriguez-Valera , F . 2012 . Complete genome sequence of the copiotrophic marine bacterium Alteromonas macleodii strain ATCC 27126T . J Bacteriol , 194 : 6998
   PubMed Web of Science ®Google Scholar
• Guitérrez , G. 2012 . Draft genome ssequence of Methanobacterium formicicum DSM 3637, an archaebacterium isolated from the methane producer amoeba Pelomyxa palustris . J Bacteriol , 194 : 6967 – 6968 .
   PubMed Web of Science ®Google Scholar
• Guizhen , Q , Li , G , Yu , Z and Shao , Z . 2012 . Genome sequence of Nitratireductor indicus type strain C115 . J Bacteriol , 194 : 6990
   PubMed Web of Science ®Google Scholar
• Justice , N B , Pan , C , Mueller , R , Spaulding , S E , Shah , V , Sun , C L , Yelton , A P , Miller , C S , Thomas , B C , Shah , M , VerBerkmoes , N , Hettich , R and Banfield , J F . 2012 . Heterotrophic archaea contribute carbon cycling in low-pH, suboxic biofilm communities . Appl Environ Microbiol , 78 : 8321 – 8330 .
   PubMed Web of Science ®Google Scholar
• Kerr , RA. 2012 . The question of Martian methane still up in the air . Science , 338 : 733
   PubMed Web of Science ®Google Scholar
• Kim , K K , Lee , K C and Lee , J-S . 2012 . Draft genome sequence of the extremely halophilic archeon Halogranum salarium B-1T . J Bacteriol , 194 : 6659
   PubMed Web of Science ®Google Scholar
• Kleiveland , C R , Hult , T O , Kuczkowska , K , Jacobsen , M , Lea , T and Pope , P B . 2012 . Draft genome sequence of the methane-oxidizing bacterium Methylococus capsulatus (Texas) . J Bacteriol , 194 : 6626
   PubMed Web of Science ®Google Scholar
• Koh , H Y , Lee , S G , Lee , J H , Doyle , S , Christner , B C and Kim , H J . 2012 . Draft genome sequence of Paenisporosarcina sp. strain TG-14, a psychrophilic bacterium isolated from sediment-laden stratified basal ice from Taylor Glacier, McMurdo Dry Valleys, Antarctica . J Bacteriol , 194 : 6656 – 6657 .
   PubMed Web of Science ®Google Scholar
• Kontur , W S , Schackwitz , W S , Ivanova , N , Martin , J , LaButti , K , Deshpande , S , Tice , H N , Pennacchio , C , Sodergren , E , Weinstock , G M , Noguera , D R and Donohue , T J . 2012 . Revised sequence and annotation of the Rhodobacter sphaeroides 2.4.1 genome . J Bacteriol , 194 : 7016 – 7017 .
   PubMed Web of Science ®Google Scholar
• Kwak , M-J , Song , J Y , Kim , B K , Chi , W-J , Kwon , S-K , Choi , S , Chang , Y-K , Hong , S-K and Kim , J F . 2012 . Genome sequence of the agar-degrading marine bacterium Alteromonadaceae sp. (sic) strain G7 . J Bacteriol , 194 : 6961 – 6962 .
   PubMed Web of Science ®Google Scholar
• Lai , Q and Shao , Z . 2012 . Genome sequence of Oceanibaculum indicum type strain P24 . J Bacteriol , 194 : 6942
   PubMed Web of Science ®Google Scholar
• Lai , Q and Shao , Z . 2012 . Genome sequence of Thalassospira profundimaris type strain WP0211 . J Bacteriol , 194 : 6956
   PubMed Web of Science ®Google Scholar
• Lai , Q , Li , G and Shao , Z . 2012 . Genome sequence of Nitratireductor pacificus type strain pht-3B . J Bacteriol , 194 : 6958
   PubMed Web of Science ®Google Scholar
• Lai , Q , Li , C and Shao , Z . 2012 . Genome sequence of Galbibacter marinum type strain ck-12-15 . J Bacteriol , 194 : 6973
   PubMed Web of Science ®Google Scholar
• Lee , S-J , Lee , Y-J , Ryu , N , Park , S , Jeong , H , Lee , S J , Kim , B-C , Lee , D-W and Lee , H-S . 2012 . Draft genome sequence of the thermophilic bacterium Anoxybacillus kamchatkensis G10 . J Bacteriol , 194 : 6684 – 6685 .
   PubMed Web of Science ®Google Scholar
• Marshall , C W , Ross , D E , Fichot , E B , Norman , R S and May , H D . 2012 . Electrosynthesis of commodity chemicals by an autotrophic microbial community . Appl Environ Microbiol , 78 : 8412 – 8420 .
   PubMed Web of Science ®Google Scholar
• Marshall , I PG , Blatney , P C , Spormann , A M and Quake , S R . 2012 . A single-cell genome for Thiovulum sp . Appl Environ Microbiol , 78 : 8555 – 8563 .
   PubMed Web of Science ®Google Scholar
• Maezato , Y , Johnson , T , McCarthy , S , Dana , K and Blum , P . 2012 . Metal resistance and lithoautotrophy in the extreme thermoacidophilic Metallosphaera sedula . J Bacteriol , 194 : 6856 – 6863 .
   PubMed Web of Science ®Google Scholar
• McLean , R JC , Lam , J S and Graham , L L . 2012 . Training the biofilm generation–a tribute to J. W. Costerton . J Bacteriol , 194 : 6706 – 6711 .
   PubMed Web of Science ®Google Scholar
• Moeller , R , Schuerger , A C , Reitz , G and Nicholson , W L . 2012 . Protective role of spore structural components in determining Bacillus subtilis spore resistance to simulated Mars surface conditions . Appl Environ Microbiol , 78 : 8849 – 8853 .
   PubMed Web of Science ®Google Scholar
• Park , S-J , Kim , J-G , Jung , M-Y , Kim , S-J , Cha , I-T , Kwon , K and Lee , J-H . 2012 . Draft genome sequence of an ammonia-oxidizing archaeon “Candidatus Nirosopumilus koreensis” AR1, from marine sediment . J Bacteriol , 194 : 6940 – 6941 .
   PubMed Web of Science ®Google Scholar
• Park , S-J , Kim , J-G , Jung , M-Y , Kim , S-J , Cha , I-T , Ghai , R , Martín-Cuadrado , A-B , Rodríguezj-Valera , F and Rhee , S-K . 2012 . Draft genome sequence of an ammonia-oxidizing archaeon, “Candidatus Nitrosopumilus sediminis” AR2, from Svalbard in the Arctic Circle . J Bacteriol , 194 : 6948 – 6949 .
   PubMed Web of Science ®Google Scholar
• Paul , K , Nonoh , J O , Mikulski , L and Brune , A . 2012 . “Methanoplasmatales,” Thermoplasmatales-related archaea in termite guts and other environments, are the seventh order of methanogens . Appl Environ Microbiol , 78 : 8245 – 8253 .
   PubMed Web of Science ®Google Scholar
• Preston , J , Watts , J EM and Jones , M . 2012 . Novel bacterial community associated with 500 –year-old unpreserved archaeological wood from King Henry VIII's Tudor warship the Mary Rose . Appl Environ Microbiol , 78 : 8822 – 8828 .
   PubMed Web of Science ®Google Scholar
• Schaffert , C S , Klatt , C G , Ward , D M , Pauley , M and Steinke , L . 2012 . Identification and distribution of high-abundance proteins in the Octopus Spring microbial mat community . Appl Environ Microbiol , 78 : 8481 – 8484 .
   PubMed Web of Science ®Google Scholar
• Shivaji , S , Ara , S , Singh , A and Pinnaka , A K . 2012 . Draft genome sequence of Cecembia lonarensis strain LW9T, isolated from Lonar Lake, a haloalkaline lake in India . J Bacteriol , 194 : 6631
   PubMed Web of Science ®Google Scholar
• Sim , M S , Ono , S and Bosak , T . 2012 . Effects of iron and nitrogen limitation on sulfur isotope fractionation during microbial sulfate reduction . Appl Environ Microbiol , 78 : 8368 – 8376 .
   PubMed Web of Science ®Google Scholar
• Stocker , R. 2012 . Marine microbes see a sea of gradients . Science , 338 : 628 – 633 .
   PubMed Web of Science ®Google Scholar
• Tang , K , Liu , K and Jiao , N . 2012 . Draft genome sequence of Oceaniovalibus guishaninsula JLT2003T . J Bacteriol , 194 : 6683
   PubMed Web of Science ®Google Scholar
• Taylor , J R and Stocker , R . 2012 . Trade-offs of chemotactic foraging in turbulent waters . Science , 338 : 675 – 679 .
   PubMed Web of Science ®Google Scholar
• Thiele , S , Fuchs , B M , Ramalah , N and Amann , R . 2012 . Microbial community response during the iron fertilization experiment LOHAFEX . Appl Environ Microbiol , 78 : 8803 – 8812 .
   PubMed Web of Science ®Google Scholar
• Yin , Y , Yue , G , Gao , Q , Wang , Z , Peng , F , Fang , C , Yang , X and Pan , L . 2012 . Genome sequence of Pedobacter arcticus sp. nov., a sea ice bacterium isolated from tundra soil . J Bacteriol , 194 : 6688
   PubMed Web of Science ®Google Scholar
• Xiong , Z-Q and Wang , Y . 2012 . Draft genome sequence of marine-derived Streptomyces sp. strain AA0539, isolated from the Yellow Sea, China . J Bacteriol , 194 : 6622 – 6623 .
   PubMed Web of Science ®Google Scholar
• Zhang , T , Bain , T S , Nevin , K P , Barlett , M A and Lovley , D R . 2012 . Anaerobic benzene oxidation by Geobacter species . Appl Environ Microbiol , 78 : 8304 – 8310 .
   PubMed Web of Science ®Google Scholar
• Zhu , B , van Dijk , G , Fritz , C , Smolders , A JP , Pol , A , Jetten , M SM and Ettwig , K F . 2012 . Anaerobic oxidation of methane in a minerotrophic peatland: Enrichment of nitrite-dependent methane-oxidizing bacteria . Appl Environ Microbiol , 78 : 8657 – 8665 .
   PubMed Web of Science ®Google Scholar