Further Readings in Geomicrobiology

References

• Bueche , M , Wunderlin , T , Roussel-Delif , L , Junier , T , Sauvain , L , Jeanneret , N and Junier , P . 2013 . Quantification of endospore-forming Firmicutes by quantitative PCR with the functional gene spoOA . Appl Environ Microbiol , 79 : 5302 – 5312 .
   PubMed Web of Science ®Google Scholar
• Cho , K , Nguyen , D X , Lee , S and Hwang , S . 2013 . Use of real-time QPCR in biokinetics and modeling of two different ammonia-oxidizing bacteria grown simultaneously . J Industr Microbiol Biotechnol , 40 : 1015 – 1022 .
   PubMed Web of Science ®Google Scholar
• Cretoiu , M S , Korthals , G W , Visser , J HM and van Elsas , J D . 2013 . Chitin amendment increases soil suppressiveness toward plant pathogens and modulates the actinobacterial and oxalobacteraceal communities in an experimental agricultural field . Appl Environ Microbiol. , 79 : 5291 – 5301 .
   PubMed Web of Science ®Google Scholar
• Esquivel , R N , Xu , R and Pohlschroder , M . 2013 . Novel archaeal adhesion pilins with a conserved N terminus . J Bacteriol , 195 : 3808 – 3818 .
   PubMed Web of Science ®Google Scholar
• Fung , I. 2013 . A hyperventilating biosphere . Science , 341 : 1075 – 1076 .
   PubMed Web of Science ®Google Scholar
• Graven , H D , Keeling , R F , Piper , S C , Patra , P K , Stephens , B B , Wofsy , S C , Welp , L R , Sweeney , C , Tans , P P , Kelley , J J , Daube , B C , Kort , E A , Santoni , G W and Bent , J D . 2013 . Enhanced seasonal exchange of CO2 by northern ecosystems since 1960 . Science , 341 : 1085 – 1089 .
   PubMed Web of Science ®Google Scholar
• Hou , J , Feng , B , Han , J , Liu , H , Zhao , D , Zhou , J and Xiang , H . 2013 . Haloarchaeal-type ß-ketothiolases involved in poly(3-hydroxybutyrate-co-3-hydroxyvalerate) synthesis in Haloferax mediterranei . Appl Environ Microbiol , 79 : 5104 – 5111 .
   PubMed Web of Science ®Google Scholar
• Jasso-Chávez , R , Apolinario , E E , Sowers , K R and Ferry , J G . 2013 . MrpA functions in energy conversion during acetate-dependent growth of Methanosarcina acetivorans . J Bacteriol , 195 : 3987 – 3994 .
   PubMed Web of Science ®Google Scholar
• Jurelevicius , D , Alvares , V M , Marques , J M , De Sousa Lima , L RF , De Almeida Dias , F and Seldin , L . 2013 . Bacterial community response to petroleum hydrocarbon amendments in freshwater, marine, and hypersaline water-containing microcosms . Appl Environ Microbiol , 79 : 5927 – 5935 .
   PubMed Web of Science ®Google Scholar
• Kato , S , Chan , C , Itoh , T and Ohkuma , M . 2013 . Functional gene analysis of freshwater iron-rich flocs at circumneutral pH and isolation of a stalk-forming microaerophilic iron-oxidizing bacterium . Appl Environ Microbiol , 79 : 5283 – 5290 .
   PubMed Web of Science ®Google Scholar
• Kazakov , A E , Rajeev , L , Luning , E G , Zane , G M , Siddartha , K , Rodionov , D A , Dubchak , I , Arkin , A P , Wall , J D , Mukhopadhyay , A and Novichkov , P S . 2013 . New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria . J Bacteriol , 195 : 4466 – 4475 .
   PubMed Web of Science ®Google Scholar
• Lefèvre , C T and Bazylinski , D A . 2013 . Ecology, diversity, and evolution of magnetotactic bacteria . Microbiol Mol Biol Rev , 77 : 476 – 496 .
   PubMedGoogle Scholar
• Lewis , T A , Glassing , A , Harper , J and Franklin , M J . 2013 . Role for ferredoxin:NAD(P)H oxidoreductase (FprA) in sulfate assimilation and siderophore biosynthesis in Pseudomonads . J Bacteriol , 195 : 3876 – 3887 .
   PubMed Web of Science ®Google Scholar
• Li , Y , Bali , S , Borg , S , Katzmann , E , Ferguson , S J and Schüler , D . 2013 . Cytochrome cd 1 nitrite reductase NirS is involved in anaerobic magnetite biomineralization in Magnetospirillum gryphiswaldense and requires NirN for proper d 1 heme assembly . J Bacteriol , 195 : 4297 – 4309 .
   PubMed Web of Science ®Google Scholar
• Madison , A S , Tebo , B M , Mucci , A , Sundby , B and Luther , G W III . 2013 . Abundant porewater Mn(III) is a major component of the sedimentary redox system . Science , 341 : 875 – 878 .
   PubMed Web of Science ®Google Scholar
• Marteyn , B , Sakr , S , Farci , S , Bedhomme , M , Chardonnet , S , Decottigenies , P , Lemaire , S D , Cassier-Chauvat , C and Chauvat , F . 2013 . The Synechocystis PCC6803 MerA-like enzyme operates in the reduction of both mercury and uranium under the control of the glutaredoxin 1 enzyme . J. Bacteriol , 195 : 4138 – 4145 .
   PubMed Web of Science ®Google Scholar
• Mehta , K K , Paskaleva , E E , Aziz-Ghannad , S , Ley , D J , Page , M A , Dordick , J S and Kane , R S . 2013 . Characterization of AmiBA2446, a novel bacteriolytic enzyme active agains Bacillus species . Appl Environ Microbiol , 79 : 5899 – 5906 .
   PubMed Web of Science ®Google Scholar
• Melville , S and Craig , L . 2013 . Type IV pili in gram-positive bacteria . Microbiol Mol Biol Rev. , 77 : 323 – 341 .
   PubMed Web of Science ®Google Scholar
• Michael , HA. 2013 . An arsenic forecast in China . Science , 341 : 852 – 853 .
   PubMed Web of Science ®Google Scholar
• Nemergut , D R , Schmidt , S K , Fukami , T and O’Neill , SP. 2013 . Patterns and processes of microbial community assembly . Microbiol Mol Biol Rev , 77 : 342 – 356 .
   PubMed Web of Science ®Google Scholar
• Oswald , R , Behrendt , T , Ermel , M , Wu , D , Su , H , Cheng , Y , Breuninger , C , Moravek , A , Mougin , E , Delon , C , Loubet , B , Pommerening-Röser , A , Sörgel , M , Pöschl , U , Hoffmann , T , Andreae , M O , Meixner , F X and Trebs , I . 2013 . HONO emissions from soil bacteria as a major source of atmospheric reactive nitrogen . Science , 341 : 1233 – 1235 .
   PubMed Web of Science ®Google Scholar
• Powell , R J and Hill , R T . 2013 . Rapid aggregation of biofuel-producing algae by the bacterium Bacillus sp. strain RPI1137 . Appl Environ Microbiol , 79 : 6093 – 6101 .
   PubMed Web of Science ®Google Scholar
• Priha , O , Nyyssönen , M , Bomberg , M , Laitila , A , Simell , J , Kapanen , A and Juovonen , R . 2013 . Application of denaturing high-performance liquid chromatography for monitoring sulfate-reducing bacteria in oil fields . Appl Environ Microbiol , 79 : 5186 – 5196 .
   PubMed Web of Science ®Google Scholar
• Qiu , D , Wei , H , Tu , Q , Yang , Y , Xie , M , Chen , J , Pinkerton , M H Jr , Liang , Y , He , Z and Zhou , J . 2013 . Combined genomics and experimental analyses of respiratory characteristics of Shewanella putrefaciens W3–18–1 . Appl Environ Microbiol , 79 : 5250 – 5257 .
   PubMed Web of Science ®Google Scholar
• Rae , B D , Long , B M , Badger , M R and Price , G D . 2013 . Functions, compositions, and evolution of two types of carboxysomes: Polyhedral microcompartments that facilitate CO2 fixation in cyanobacteria and some proteobacteria . Microbiol Mol Biol Rev. , 77 : 357 – 379 .
   PubMed Web of Science ®Google Scholar
• Rodríguez-Lado , l , Sun , G , Berg , M , Zhang , Q , Xue , H , Zheng , Q and Johnson , CA. 2013 . Groundwater arsenic contamination throughout China . Science341 , : 866 – 868 .
   Google Scholar
• Schäfer , C , Friedrich , B and Lenz , O . 2013 . Novel, oxygen-insensitive Group 5 [NIFe]-hydrogenase in Ralstonia eutropha . Appl Environ Microbiol , 79 : 5121 – 5129 .
   PubMedGoogle Scholar
• Seaton , S C , Silby , M W and Levy , S B . 2013 . Pleiotropic effects of GacA on Pseudomonas fluorescens Pf0–1 in vitro and in soil . Appl. Environ Microbiol , 79 : 5405 – 5410 .
   PubMed Web of Science ®Google Scholar
• Shen , L-D , Liu , S , Lou , L-P , Liu , W-P , Xu , X Y , Zheng , P and Hu , B-I . 2013 . Broad distribution of diverse anaerobic ammonium-oxidizing bacteria in Chinese agricultural soils . Appl Environ Microbiol , 79 : 6167 – 6172 .
   PubMed Web of Science ®Google Scholar
• Smeulders , M , Pol , A , Venselaer , H , Barends , T RM , Hermans , J , Jetten , M SM and Op den Camp , HJM. 2013 . Bacterial CS2 hydrolases from Acidithiobacillus thiooxidans strains are homologous to the archaeal catenane CS2 hydrolase . J Bacteriol , 195 : 4046 – 4056 .
   PubMed Web of Science ®Google Scholar
• Suzuki , H , Yoshida , K-I and Ohshima , T . 2013 . Polysaccharide-degrading thermophiles generated by heterologous gene expression in Geobacillus kaustophilus HTA426 . Appl Environ Microbiol , 79 : 5151 – 5158 .
   PubMed Web of Science ®Google Scholar
• Tocheva , E I , Dekas , A E , MvGlynn , S E , Morris , D , Orphan , V J and Jensen , G J . 2013 . Polyphosphate storage during sporulation in the gram-negative bacterium Acetonema longum . J Bacteriol , 195 : 3940 – 3946 .
   PubMed Web of Science ®Google Scholar
• VanNice , J C , Sjaff , A , Wyckoff , G J and Miziorko , H M . 2013 . Expression in Haloferax volcanii of 3-hydroxy-3-methylglutaryl coenzyme A synthase facilitates isolation and characterization of the active form of a key enzyme required for polyisoprenoid cell membrane biosynthesis in halophilic Archaea . J. Bacteriol , 195 : 3854 – 3862 .
   PubMed Web of Science ®Google Scholar
• Vorobev , A , Jagadevan , S , Baral , B S , DiSpirito , A A , Freemeier , B C , Bergman , B H , Bandow , N L and Semrau , J D . 2013 . Detoxification of mercury by methanobactin from Methylosinus trichsporium OB3b. . Appl Environ Microbiol , 79 : 5918 – 5926 .
   PubMed Web of Science ®Google Scholar
• Wang , S , Huang , H , Kahnt , J and Thauer , R K . 2013 . Clostridum acidurici electron bifurcating dehydrogenase . Appl Environ Microbiol , 79 : 6176 – 6179 .
   PubMed Web of Science ®Google Scholar
• Weissgerber , T , Dobler , N , Polen , T , Latus , J , Stockdreher , Y and Dahl , C . 2013 . Genome-wide transcriptional profiling of the purple sulfur bacterium Allochromatium vinosum DSM 180T during growth on different reduced sulfur compounds . J Bacteriol , 195 : 4231 – 4245 .
   PubMed Web of Science ®Google Scholar