References
- Akerman NH, Price RE, Pichler T, Amend JP. 2011. Energy sources for chemolithotrophs in an arsenic- and iron-rich shallow-sea hydrothermal system. Geobiology 9:436–445.
- Amend JP, Shock EL. 1998. Energetics of amino acid synthesis in hydrothermal ecosystems. Science 281:1659–1662.
- Amend JP, Shock EL. 2001. Energetics of overall metabolic reactions of thermophilic and hyperthermophilic archaea and Bacteria. FEMS Microbiol Rev 25:175–243.
- Borch T, Kretzschmar R, Kappler A, Van Cappellen P, Ginder-Vogel M, Voegelin A, Campbell K. 2010. Biogeochemical redox processes and their impact on contaminant dynamics. Environ Sci Technol 44:15–23.
- Conrad R. 1996. Soil microorganisms as controllers of atmospheric trace gases (H2, CO, CH4, OCS, N2O and NO). Microbiol Rev 60:609–640.
- Falkowski PG, Fenchel T, Delong EF. 2008. The microbial engines that drive Earth's biogeochemical cycles. Science 320:1034–1039.
- Hallbeck L, Pedersen K. 1995. Benefits associated with the stalk of Gallionella ferruginea, evaluated by comparison of a stalk-forming and non-stalk forming strain and biofilm studies in situ. Microbial Ecol 30:257–268.
- Heijnen JJ. 1999. Bionergetics of microbial growth. In: Flickinger, MC, Drew, SW (eds.) Encyclopedia of bioprocess technology: Fermentation, biocatalysis, and bioseparation. New York: Wiley & Sons Inc., p267–291.
- Heijnen JJ, Van Dijken JP. 1992. In search of a thermodynamic description of biomass yields for the chemotrophic growth of microorganisms. Biotech Bioengineer 39:833–858.
- Hoehler TM. 2004. Biological energy requirements as quantitative boundary conditions for life in the subsurface. Geobiology 2:205–215.
- Inskeep WP, Ackerman GG, Taylor WP, Kozubal M, Korf S, Macur RE. 2005. On the energetics of chemolithotrophy in nonequilibrium systmems: case studies of geothermal springs in Yellowstone National Park. Geobiology 3:297–317.
- James RE, Scott SD, Fortin D, Clark ID, Ferris FG. 2012. Regulation of Fe3+-oxide formation among Fe2+-oxidizing bacteria. Geomicrob J 29: 537–543.
- Jin Q, Bethke CM. 2007. The thermodynamics and kinetics of microbial metabolism. Am J Sci 307:643–677.
- Jin Q, Bethke CM. 2005. Predicting the rate of microbial respiration in geochemical environments. Geochim Cosmochim Acta 69:1133–1143.
- Jin Q, Bethke CM. 2003. A new rate law describing microbial respiration. Appl Environ Microbial 69:2340–2348.
- Jin Q, Bethke CM. 2002. Kinetics of electron transfer through the respiratory chain. Biophys J 83:1797–1808.
- Jørgensen BB. 2012. Shrinking majority of the deep biosphere. Proc Nat Am Soc 109:15976–15977.
- LaRowe DE, Dale AW, Amend JP, Van Cappellen P. 2012. Thermodynamic limitations on microbially catalyzed reaction rates. Geochim Cosmochim Acta 90:96–109.
- LaRowe DE, Dale AW, Regnier P. 2008. A thermodynamic analysis of the anaerobic oxidation of methane in marine sediments. Geobiology 6:436–449.
- Litchman E, Klausmeier CA. 2001. Competition of phytoplankton under fluctuating light. Amer Natural 157:170–187.
- Macur RE, Langner HW, Kocar BD, Inskeep WP. 2004. Linking geochemical processes with microbial community analysis: Successional dynamics in an arsenic-rich, acid-sulfate-chloride geothermal spring. Geobiology 2:163–177.
- McCollom TM. 2007. Geochemical constraints on sources of metabolic energy for chemolithoautotrophy in ultramafic-hosted deep-sea hydrothermal systems. Astrobiology 7:933–950.
- McCollom TM, Shock EL. 1997. Geochemical constraints on chemolithoautotrophic metabolism by microorganisms in seafloor hydrothermal systems. Geochim Cosmochim Acta 61:4375–4391.
- Neubauer SC, Emerson D, Megonical P. 2002. Life at the energetic edge: Kinetics of circumneutral iron oxidation by lithotrophic iron-oxidizing bacteria isolated from the wetland-plant rhizosphere. Appl Environ Microb. 68:3988–3995.
- Newman DK, Banfield JF. 2002. Geomicrobiology: How molecular-scale interactions underpin biogeochemical systems. Science 296:1071–1077.
- Reysenbach AL, Shock E. 2002. Merging genomes with geochemistry in hydrothermal ecosystems. Science 296:1077–1082.
- Rogers KL, Amend JP. 2006. Energetics of potential heterotrophic metabolisms in the marine hydrothermal system of Vulcano Island, Italy. Geochim Cosmochim Acta 70:6180–6200.
- Schink B. 1997. Energetics of synthrophic cooperation in meth- anogenic degradation. Microbiol Mol Biol Rev 61:262–280.
- Schlesinger WH. 1999. Biogeochemistry: An Analysis of Global Change, 2nd ed. San Diego, CA: Academic Press.
- Shock EL, Holland M, Meyer-Dombard D, Amend JP, Osburn GR, Fischer TP. 2010. Quantifying inorganic sources of geochemical energy in hydrothermal ecosystems, Yellowstone National Park, USA. Geochim Cosmochim Acta 74:4005–4043.
- Spear JR, Walker JJ, McCollom TM, Pace NR. 2005. Hydrogen and bioenergetics in the Yellowstone geothermal ecosystem. Proc Natl Acad Soc 102:2555–2560.
- Tilman D. 1981. Tests of resource competition theory using four species of Lake Michigan algae. Ecology 62:802–815.
- Tilman D. 1982. Resource Competition and Community Structure. Princeton, NJ: Princeton University Press.
- Truesdell AH, Jones BF. 1974. Wateq, a computer program for calculating chemical equilibria of natural waters. J Res US Geol Surv 2:233–248.
- Van Bodegom P. 2007. Microbial maintenance: a critical review on its quantification. Microb Ecol 53:513–523.
- Vollrath S, Behrends T, Van Cappellen P. 2012. Oxygen dependency of neutrophilic Fe (II) oxidation by Leptothrix differs from abiotic reaction. Geomicrob J 29:550–560.