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Original Articles

Evidences for Bioprecipitation of Pedogenic Calcite by Calcifying Bacteria from Three Different Soils of L'Aquila Basin (Abruzzi, Central Italy)

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Pages 701-711 | Received 01 Feb 2014, Accepted 01 Dec 2014, Published online: 29 Jun 2015

References

  • Amit R, Harrison JBJ. 1995. Biogenic calcic horizon development under extremely arid conditions Nizzana Sand Dunes, Israel. Adv Geoecol 28:65–88.
  • Arnott HJ, Pautard FGE. 1970. Calcification in plants. In: Schraer H, editor. Biological calcification: cellular and molecular aspects. New York: Appleton-Century Crofts, p375–441.
  • Banks ED, Nicholas MT, Gulley J, Lubbers BR, Giarrizo JG, Bullen HA, Hoehler TM, Barton HA, Res Microbiol. 2010. Bacterial calcium carbonate precipitation in cave environments: a function of calcium homeostasis. Geomicrobiol J 27:444–454.
  • Barabesi C, Galizzi A, Mastromei G, Rossi M, Tamburini E, Perito B. 2007. Bacillus subtilis gene cluster involved in calcium carbonate biomineralization. J Bacteriol 189 (1):228–235.
  • Barabesi C, Tamburini E, Mastromei G, Perito B. 2003. Mechanisms of microbial calcium carbonate precipitation. In: Koestler RJ, Koestler VH, Charola AE, Nieto-Fernandez FE, editors. Art, Biology, and Conservation: Biodeterioration of Works of Art. New York: Metropolitan Museum of Art, p472–485.
  • Barton HA, Northup DE. 2007. Geomicrobiology in cave environments: past, current and future perspectives. J Cave Karst Stud 69:163–178.
  • Baskar S, Baskar R, Mauclaire L, Mckenzie JA. 2005. Role of microbial community in stalactite formation, Sahastradhara caves, Dehradun, India. Curr Sci 88:1305–1308.
  • Benzerara K, Menguy N. 2009. Looking for traces of life in minerals. CR Palevol 8(7):617–628.
  • Boquet E, Boronat A, Ramos-Cormenzana A. 1973. Production of calcite (calcium carbonate) crystals by soil bacteria is a general phenomenon. Nature 246:527–529.
  • Bruand A, Duval O. 1999. Calcified fungal filaments in the petrocalcic horizon of Eutrochrepts in Beauce, France. Soil Sci Soc Am J 63:164–169.
  • Buczynski C, Chafetz HS. 1991. Habit of bacterially induced precipitates of calcium carbonate and influence of medium viscosity on mineralogy. J Sediment Petrol 61:226–233.
  • Cacchio P, Contento R, Ercole C, Cappuccio G, Preite Martinez M, Lepidi A. 2004. Involvement of microorganisms in the formation of carbonate speleothems in the Cervo Cave (L'Aquila-Italy). Geomicrobiol J 21:497–509.
  • Cacchio P, Ercole C, Cappuccio G, Lepidi A. 2003. Calcium carbonate precipitation by bacterial strains isolated from limestone cave and from a loamy soil. Geomicrobiol J 20:85–98.
  • Cacchio P, Ercole C, Contento R, Cappuccio G, Preite Martinez M, Del Gallo M, Lepidi A. 2012. Involvement of bacteria in the origin of a newly described speleothem in the gypsum cave of Grave Grubbo Cave (Crotone-Italy). J Cave Karst Stud 74(1): 7–18. DOI: 10.4311/2010MB0136R.
  • Cacchio P, Ferrini G, Ercole C, Del Gallo M, Lepidi A. 2014. Biogenicity and characterization of moonmilk in the Grotta Nera (Majella National Park, Abruzzi, Central Italy). J Cave Karst Stud 76(2):88–103. Doi:10.4311/2012MB0270.
  • Castanier S, Le Métayer-Levrel G, Perthuisot J-P. 2000. Bacterial roles in the precipitation of carbonate minerals. In: Riding RE, Awramik SM, editors. Microbial Sediments. Berlin Heidelberg: Springer-Verlag, p32–39.
  • Danielli HMC, Edington MA. 1983. Bacterial calcification in limestone caves. Geomicrobiol J 3:1–16.
  • DeJong JT, Mortensen BM, Martinez BC, Nelson DC. 2010. Bio-mediated soil improvement. Ecol Eng Res 36:197–210.
  • De Muynck W, Cox K, Verstraete W, De Belie N. 2008. Bacterial carbonate precipitation as an surface treatment for concrete. Construct Build Mater 22:875–885.
  • Doner HE, Lynn WC. 1989. Carbonate, halide, sulfate and sulfide minerals. In: Dixon JB, Weed SB, editors. Minerals in Soil Environments, 2nd ed. Madison, WI: Soil Science Society of America, p279–330.
  • Drees LR, Wilding LP. 1987. Micromorphic record and interpretations of carbonate forms in the Rolling Plains of Texas. Geoderma 40:157–175.
  • Drew GH. 1911. The action of some denitrifying bacteria in tropical and temperate seas, and the bacterial precipitation of calcium carbonate in the sea. J Mar Biol Asso 9:142–155.
  • Edinger SB. 1990. Polygenesis and calcite micromorphology of Aridisols on a granitic pediment, East Mojave Desert, California. Ann Arbor, MI: University Microfilm International.
  • Ehrlich HL. 1996. Geomicrobiology. New York, NY: Marcel Dekker.
  • Ehrlich HL. 1998. Geomicrobiology: its significance for geology. Earth Sci. Rev. 45:45–60.
  • Ehrlich HL. 1999. Microbes as geologic agents: their role in mineral formation. Geomicrobiol J 16:135–153.
  • Elliot ET, Anderson RV, Coleman DC, Cole CV. 1980. Habitable pore space and microbial trophic interactions. Oikos 35: 327–335.
  • Ercole C, Cacchio P, Botta AL, Centi V, Lepidi A. 2007. Bacterially induced mineralization of calcium carbonate: the role of exopolysaccharides and capsular polysaccharides. Microsc Microanal 13:42–50.
  • Ercole C, Cacchio P, Del Gallo M. 2014. Microbial biotechnologies to preserve and restore stone monuments. In: Mendez-Vilas A, Editor. Microscopy: Advances in Scientific Research and Education. Badajoz, Spain: Formatex, p449–456.
  • Ferrer MR, Quevedo-Sarmiento J, Bejar V, Delgado G, Ramos-Cormenzana A, Rivadeneyra MA. 1987. Calcium carbonate formation by Deleya halophila: effect of salt concentration and incubation temperature. Geomicrobiol J 6:49–57.
  • Ferrer MR, Quevedo-Sarmiento J, Rivadeneyra MA, Bejar V, Delgado G, Ramos-Cormenzana A. 1988. Calcium carbonate precipitation by two groups of moderately halophilic microorganisms at different temperatures and salt concentrations. Curr Microbiol 17:221–227.
  • Ferris FG, Phoenix V, Fujita Y, Smith RW. 2003. Kinetics of calcite precipitation induced by ureolytic bacteria at 10°C to 20°C in artificial groundwater. Geochem Cosmochim Acta 67: 1701–1722.
  • Fierer N, Jackson RB. 2006. The diversity and biogeography of soil bacterial communities. Proc Natl Acad Sci USA 103(3):626–631.
  • Florenzano G. 1983. Fondamenti di Microbiologia del Terreno. Roma: REDA.
  • Fujita Y, Ferris FG, Lawson RD, Colwell FS, Smith RW. 2000. Calcium carbonate precipitation by ureolytic subsurface bacteria. Geomicrobiol J 17:305–318.
  • Gile LH, Peterson FF, Grossman RB. 1965. The K horizon-a master soil horizon of carbonate accumulation. Soil Sci 99:74–82.
  • Gile LH, Peterson F, Grossman RB. 1966. Morphological and genetic sequence of carbonate accumulation in desert soils. Soil Sci 101:347–360.
  • Gollapudi UK, Knutson CL, Bang SS, Islam MR. 1995. A new method for controlling leaching through permeable channels. Chemosphere 30(4):695–705.
  • Harkes MP, van Paassen LA, Booster JL, Whiffin VS, van Loosdrecht MCM. 2010. Fixation and distribution of bacterial activity in sand to induce carbonate precipitation for ground reinforcement. Ecol Eng 36:112–117.
  • Hogg S. 2005. Essential Microbiology. New York: John Wiley & Sons.
  • Ivanov V. 2010. Environmental Microbiology for Engineers. Boca Raton, FL: CRC Press, Taylor & Francis.
  • Jocteur Monrozier L, Ladd JN, Fitzpatrick AW, Foster RC, Rauspach M. 1991. Components and microbial biomass content of size fractions in soils of contrasting aggregation. Geoderma 49:37–62.
  • Jones B. 2001. Microbial activity in caves—A geological perspective. Geomicrobiol J 18:345–357.
  • Klappa CF. 1979. Calcified filaments in Quaternary calcretes: Organo-mineral interactions in the subaerial vadose environment. J Sediment Petrol 49:955–968.
  • Konazawa S, Filip Z. 1986. Distribution of microorganisms, total biomass, and enzyme activities in different particles of brown soil. Microb Ecol 12:205–215.
  • Krumbein WE. 1968. Geomicrobiology and geochemistry of the “Nari-Lime-Crust” (Israel). In: Muller G, Friedman GM, editors. Recent Developments in Carbonate Sedimentology in Central Europe. New York: Springer-Verlag, p138–147.
  • Ladd JN, Amato M, Jocteur-Monrozier L, Gestel M. 1990. Soil microhabitats and carbon and nitrogen metabolism. In: Proceedings of the 14th International Congress of Soil Science, Kyoto III, p82–87.
  • Lal R, Kimble JM, Eswaran H, Stewart BA. 1999. Global Climate Change and Pedogenic Carbonates. Boca Raton, FL: Lewis Publishers.
  • Lalou C. 1957. Studies on bacterial precipitation of carbonates in sea water. J Sediment Petrol 27:190–195.
  • Lipman CB. 1929. Further studies on marine bacteria with special reference to the Drew hypothesis on CaCO3 precipitation on sea. Carnegie Inst 391:231–248.
  • McArthur JV. 2006. Microbial Ecology An Evolutionary Approach. Oxford, UK: Elsevier Academy Press.
  • Mills AL. 2003. Keeping in touch: microbial life on soil particle surfaces. Adv Agron 78: 1–43.
  • Ministry of Agriculture and Forestry. 1997. Official Methods of Physical Analysis of the Soil. In: Official Gazette no. 204, 2 September, Istituto Poligrafico e Zecca dello Stato Editor.
  • Ministry of Agriculture and Forestry. 1999. Official Methods of Chemical Analysis of the Soil. In: Official Gazette no. 248, 21 October, IPZS Editor.
  • Monger HC. 1990. Soil mineral transformations in a Southern New Mexico Aridisols. Ann Arbor, MI: University Microfilm International.
  • Monger HC, Daugherty LA, Lindemann WC, Liddell CM. 1991. Microbial precipitation of pedogenic calcite. Geology 19:997–1000.
  • Monger HC, Gallegos RA. 2000. Biotic and abiotic processes and rates of pedogenic carbonate accumulation in the southwestern United States-relationship to atmospheric CO2 sequestration. In: Lal R, Kimble JM, Eswaran H, Steward BA, editors. Global Climate Change and Pedogenic Carbonates. Boca Raton, FL: Lewis Publishers, p273–289.
  • Morita RY. 1980. Calcite precipitation by marine bacteria. Geomicrobiol J 2(1):63–82.
  • Novitsky JA. 1981. Calcium-carbonate precipitation by marine-bacteria. Geomicrobiol J 2:375–388.
  • Pal DK, Dasog GS, Vadivelu S, Ahuja RH, Bhattacharyya T. 2000. Secondary calcium carbonate in soils of arid and semiarid regions of India. In: Lal R, Kimble JM, Eswaran H, Stewart BA, editors. Global Climate Change and Pedogenic Carbonates. London, UK: Lewis Publishers, p149–185.
  • Parraga J, Rivadeneyra MA, Delgado R, Iniguez J, Soriano M, Delgado G. 1998. Study on biomineral formation by bacteria from soil solution equilibria. React Funct Polym 36:265–271.
  • Phillips SE, Milnes AR, Foster RC. 1987. Calcified filaments: an example of biological influences in the formation of calcrete in South Australia. Aust J Soil Res 25:405–428.
  • Postma J, van Veen JA. 1990. Habitable pore space and survival of Rhizobium leguminosarum biovar trifolii introduced into soil. Microb Ecol 19:149–161.
  • Rabenhorst MC, West LT, Wilding LP. 1991. Genesis of calcic and petrocalcic horizons in soils over carbonate rocks. In: Nettleton WD, editor. Occurrence, Characteristics and Genesis of Carbonate, Gypsum and Silica Accumulations in Soils. Madison, WI: Soil Science Society of America Special Publication, vol. 26, p61–74.
  • Ranjard L, Richaume A. 2001. Quantitative and qualitative microscale distribution of bacteria in soil. Res Microbiol 152:707–716.
  • Rivadeneyra MA, Ramos-Cormenzana A, Garcìa-Cervigon A. 1985. Etude de l'influence du rapport Mg/Ca sur la formation de carbonate par des bacteria telluriques. Can J Microbiol 31: 229–231.
  • Rivadeneyra MA, Delgado R, Quesada E, Ramos-Cormenzana A. 1991. Precipitation of calcium carbonate by Deleya halophila in media containing NaCl as sole salt. Curr Microbiol 22:185–190.
  • Rivadeneyra MA, Delgado G, Delgado R, del Moral A, Ferrer MR, Ramos-Cormenzana A. 1994a. Precipitation of carbonates by Bacillus spp. isolated from saline soils Geomicrobiology 11:175–184.
  • Rivadeneyra MA, Delgado R, del Moral A, Ferrer MR, Ramos-Cormenzana A. 1994b. Precipitation of calcium carbonate by Vibrio spp. From an inland saltern. FEMS Microbiol Ecol 13:197–204.
  • Rivadeneyra MA, Delgado G, Ramos-Cormenzana A, Delgado R. 1998. Biomineralisation of carbonates by Halomonas eurihalina in solid and liquid media with different salinities: crystal formation sequence. Res Microbiol 149:277–287.
  • Rivadeneyra MA, Delgado G, Soriano M, Ramos-Cormenzana A, Delgado R. 2000. Precipitation of carbonates by Nesterenkonia halobia in liquid media. Chemosphere 41:617–624.
  • Rivadeneyra MA, Parraga J, Delgado R, Ramos-Cormenzana A, Delgado G. 2004. Biomineralization of carbonates by Halobacillus trueperi in solid and liquid media with different salinities. FEMS Microbiol Ecol 48:39–46.
  • Rodriguez-Navarro C, Rodriguez-Gallego M, Ben Chekroun K, Gonzalez-Munoz MT. 2003. Conservation of ornamental stone by Myxococcus xanthus-induced carbonate biomineralization. Appl Environ Microbiol 69(4):2182–2193.
  • Sánchez-Román M, Rivadeneyra MA, Vasconcelos C, McKenzie JA. 2007. Biomineralization of carbonate and phosphate by moderately halophilic bacteria. FEMS Microbiol Ecol 61:273–284.
  • Schultze-Lam S, Fortin D, Davis BS, Beveridge TJ. 1996. Mineralisation of bacterial surfaces, Chem Geol 132:171–181.
  • Silva-Castro GA, Uad I, Rivadeneyra A, Vilchez JI, Martin-Ramos D, Gonzales-Lopez J, Rivadeneyra MA. 2013. Carbonate precipitation of bacterial strains isolated from sediments and seawater: formation mechanism. Geomicrobiol J 30(9):840–850.
  • Smibert RM, Krieg NR. 1981. General characterization. In: Gerhardt P, editor. Manual of methods for general bacteriology. Washington, DC: American Society for Microbiology, p409–443.
  • Stocks-Fisher S, Galinat JK, Bang SS. 1999. Microbiological precipitation of CaCO3. Soil Biol Biochem 31(11):1563–1571.
  • Thompson JB, Ferris FG. 1990. Cyanobacterial precipitation of gypsum, calcite, and magnesite from natural alkaline lake water. Geology 18:995–998.
  • Tiano P. 1995. Stone reinforcement by calcite crystal precipitation induced by organic matrix macromolecules. Stud Conserv 40:171–176.
  • Van Gestel M, Merckx R, Vlassek K. 1996. Spatial distribution of microbial biomass in microaggregates of a silty-loam soil and the relation with the resistance of microorganisms to soil drying. Soil Biol Biochem 28:503–510.
  • Verrecchia EP, Verrecchia KE. 1994. Needle-fiber calcite: a critical review and a proposed classification. J Sed Petrol A64:650–664.
  • Vincent J. 1990. Structural Biomaterials. Princeton, NJ: Princeton University Press.
  • von Knorre H, Krumbein WE. 2000. Bacterial calcification. In: Riding RE, Awramik SM editors. Microbial sediments. Berlin-Germany: Springer-Verlag, p25–31.
  • Warren LA, Maurice PA, Parmar N, Ferris FG. 2001. Microbially mediated calcium carbonate precipitation: implication for interpreting calcite precipitation and for solid-phase capture of inorganic contaminants. Geomicrobiol J 18(1):93–115.
  • Weiner S. 1986. Organization of extracellularly mineralized tissues: a comparative study of biological crystal growth, CRC Crit Rev Biochem 20:365–408.
  • Whiffin VS, Van Paassen LA, Harkes MP. 2007. Microbial Carbonate precipitation as a soil improvement technique. Geomicrobiol J 24:417–423.
  • Whitman WB, Coleman DC, Wiebe WJ. 1998. Prokaryotes: the unseen majority. Proc Natl Acad Sci USA 95(12): 6578–6583.
  • Wolters V, Joergensen RG.1991. Microbial Carbon turnover in beech forest soils at different stages of acidification. Soil Biol Biochem 23:897–902.
  • Wright VP. 1986. The role of fungal biomineralization in the formation of early carboniferous soil fabrics. Sedimentology 33:831–838.
  • Zamarreño DV, Inkpen R, May E. 2009. Carbonate crystals precipitated by freshwater bacteria and their use as a limestone consolidant. Appl Environ Microbiol 75(18):5981–5990.

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