Bacterial Populations (First Record) at Two Shallow Hydrothermal Vents of the Mexican Pacific West Coast

References

• Alfonso P, Prol-Ledesma RM, Canet C, Melgarejo JC, Fallick AE. 2005. Isotopic evidence for biogenic precipitation as a principal mineralization process in coastal gasohydrothermal vents, Punta Mita, Mexico. Chem Geol 224:113–121.
   Web of Science ®Google Scholar
• Alfredsson GA, Kristjansson JK, Hjorleifsdottir S, Stetter KO. 1988. Rhodothermus marinus, gen. nov., sp. nov., a thermophibic, halophilic bacterium from Submarine Hot Springs in Iceland. J Gen Microbiol 134:299–306.
   Google Scholar
• Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215:403–410.
   PubMed Web of Science ®Google Scholar
• Canet C, Prol-Ledesma RM, Melgarejo JC, Reyes A. 2003. Methane-related carbonates formed at submarine hydrothermal springs a new setting for microbially-derived carbonates. Mari Geol 199:245–261.
   Web of Science ®Google Scholar
• Canet C, Prol-Ledesma RM, Torres-Alvarado I, Gilg HA, Villanueva RE, Lozano R. 2005a. Silica-carbonate stromatolites related to coastal hydrothermal venting in Bahía Concepción, Baja California Sur, Mexico. Sediment Geol 174:97–113.
   Web of Science ®Google Scholar
• Canet C, Prol-Ledesma RM, Proenza J, Rubio-Ramos MA, Forrest M, Torres-Vera MA, Rodríguez-Díaz AA. 2005b. Mn-Ba-Hg mineralization at shallow submarine hydrothermal vents in Bahía Concepción, Baja California Sur, Mexico. Chem Geol 224:96–112.
   Web of Science ®Google Scholar
• Connon SA, Koski AK, Neal AL, Wood SA, Magnuson TS. 2008. Ecophysiology and geochemistry of microbial arsenic oxidation within a high arsenic, circumneutral hot spring system of the Alvord Desert. FEMS Microbiol Ecol 64:117–128.
   PubMed Web of Science ®Google Scholar
• Dando PR, Stüben D, Varnavas SP. 1999. Hydrothermalism in the Mediterranean Sea. Prog Oceanogr 44:333–367.
   Web of Science ®Google Scholar
• Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791.
   PubMed Web of Science ®Google Scholar
• Forrest MJ, Ledesma-Vázquez J, Ussler W, III, Kulongoski JT, Hilton DR, Greene HG. 2005. Gas geochemistry of a shallow submarine hydrothermal vent associated with El Requesón fault zone in Bahía Concepción, Baja California Sur, México. Chem Geol 224:82–95.
   Web of Science ®Google Scholar
• Fracek Jr SP, Stolz JF. 1985. Spirochaeta bajacaliforniensis sp. n. from a microbial mat community at Laguna Figueroa, Baja California Norte, Mexico. Arch Microbiol 142:317–325.
   PubMed Web of Science ®Google Scholar
• Hoeft SE, Switzer Blum J, Stolz JF, Tabita FR, Witte B, King GM, Santini JM, Oremland RS. 2007. Alkalilimnicola ehrlichii, sp. nov., a novel, arsenite-oxidizing haloalkaliphilic γ-Proteobacterium capable of chemoautotrophic or heterotrophic growth with nitrate or oxygen as the electron acceptor. Int J Syst Evol Microbiol 57:504–512.
   PubMed Web of Science ®Google Scholar
• Hua NP, Kanekiyo A, Fujikura K, Yasuda H, Naganuma T. 2007. Halobacillus profundi sp. nov. and Halobacillus kuroshimensis sp. nov., moderately halophilic bacteria isolated from a deep-sea methane cold seep. Int J Syst Evol Microbiol 57:1243–1249.
   PubMed Web of Science ®Google Scholar
• Jannasch HW. 1995. Microbial interactions with hydrothermal fluids. In: Humphris SE, Zierenberg RA, Mullineaux L, Thomson R (Eds.), Physical, Chemical, Biological, and Geological Interactions within Seafloor Hydrothermal Systems. Amer Geophys Union Monogr 91:273–296.
   Google Scholar
• Kaye J, Baross JA. 2000. Incidence of halotolerant bacteria in Pacific hydrothermal-vent and pelagic environments. FEMS Microbiol Ecol 32:249–260.
   PubMed Web of Science ®Google Scholar
• Marsh CL, Larsen DH. 1953. Characterization of some thermophilic bacteria from the hot springs of Yellowstone National Park. J Bacteriol 65:193–197.
   PubMed Web of Science ®Google Scholar
• Maugeri TL, Bianconi G, Canganella F, Danovaro R, Gugliandolo C, Italiano F, Lentini V, Manini E, Nicolaus B. 2010. Shallow hydrothermal vents in the southern Tyrrhenian Sea. Chemistry and Ecology 26:285–298.
   Web of Science ®Google Scholar
• Maugeri TL, Gugliandolo C, Caccamo D, Panico A, Lama L, Gambacorta A, Nicolaus B. 2002. A halophilic thermotolerant Bacillus isolated from a marine hot spring able to produce a new exopolysaccharide. Biotechnol Lett 24:515–519.
   Web of Science ®Google Scholar
• Maugeri TL, Lentini V, Gugliandolo C, Italiano F, Cousin S, Stackerbrandt E. 2009. Bacterial and archaeal populations at two shallow hydrothermal vents of Panarea Island (Eolian Islands, Italy). Extremophiles 13:199–212.
   PubMed Web of Science ®Google Scholar
• Namsaraev, BB, Dubinina, GA, Bonch-Osmolovskaya, EA, Starynin, DA, Grabovich, MY, Kachalkin, VI, Gorlenko, VM 1991. Participation of bacteria of carbon, sulphur and iron cycles in destruction of organic matter in benthic communities of Kraternaya Bight. Shallow-Water Hydrothermal Vents and the Ecosystem of Kraternaya Bight,(Ushishir Volcano, Kurile Islands) Book I. Functional characteristics. Part II. Vladivostok: Far East Branch, USSR Academy of Sciences, p154–171.
   Google Scholar
• Oremland RS, Hoeft SE, Santini JM, Bano N, Hollibaugh RA, Hollibaugh JT. 2002. Anaerobic oxidation of arsenite in Mono Lake water and by a facultative, arsenite-oxidizing chemoautotroph, strain MLHE-1. Appl Environ Microbiol 68:4795–4802.
   PubMed Web of Science ®Google Scholar
• Oremland, RS, Saltikov CW, Wolfe-Simon F, Stolz JF. 2009. Arsenic in the evolution of earth and extraterrestrial ecosystems. Geomicrobiol J 26:522–536.
   Web of Science ®Google Scholar
• Oremland RS, Stolz JF. 2003. The ecology of arsenic. Science 300:939–944.
   PubMed Web of Science ®Google Scholar
• Papke RT, Ramsing NB, Bateson MM, Ward DM. 2003. Geographical isolation in hot spring cyanobacteria. Environ. Microbiol. 5:650–659.
   PubMed Web of Science ®Google Scholar
• Prieur D. 1997. Microbiology of deep-sea hydrothermal vents. Trends Biotechnol. 15:242–244.
   Web of Science ®Google Scholar
• Prol-Ledesma RM, Canet C, Melgarejo JC, Núñez-Cornú FJ. 1999. Mineralogy of a shallow hydrothermal spreading center near Punta Mita (western Mexico). Mineral deposits. In: Stanley CJ, et al., editors. Processes to Processing. Rotterdam: Balkema, p 569–572.
   Google Scholar
• Prol-Ledesma RM, Canet C, Melgarejo TC, Tolson G, Rubio-Ramos MA, Cruz-Ocampo JC, Ortega-Osorio A, Torres-Vera MA, Reyes A. 2002. Cinnabar deposition in submarine coastal hydrothermal vents, Pacific Margin of Central Mexico. Econ Geol 97:1331–1340.
   Web of Science ®Google Scholar
• Prol-Ledesma RM, Canet C, Torres-Vera MA, Forrest MJ, Armienta MA. 2004. Vent fluid chemistry in Bahía Concepción coastal submarine hydrothermal system, Baja California Sur, Mexico. J Volcanol Geotherm Res 137:311–328.
   Web of Science ®Google Scholar
• Prol-Ledesma, RM, Dando, P, de Ronde, CEJ 2005. Preface Special Issue on “Shallow-Water Hydrothermal Venting”. Chemical Geology 224:1–4.
   Google Scholar
• Reysenbach AL, Cady SL. 2001. Microbiology of ancient and modern hydrothermal systems. Trends Microbiol 9:79–86.
   PubMed Web of Science ®Google Scholar
• Rinke C, Schmitz-Esser S, Stoecker K, Nussbaumer AD, Molnár DA, Vanura K, Wagner M, Horn M, Ott JA, Bright M. 2006. “Candidatus Thiobios zoothamnicoli,” an ectosymbiotic bacterium covering the giant marine ciliate Zoothamnium niveum. Appl Environ Microbiol 72:2014–2021.
   PubMed Web of Science ®Google Scholar
• Roeselers G, Norris TB, Castenholz RW, Rysgaard S, Glud RN, Kühl M, Muyzer G. 2007. Diversity of phototrophic bacteria in microbial mats from Arctic hot springs (Greenland). Environ Microbiol 9:26–38.
   PubMed Web of Science ®Google Scholar
• Sievert SM, Heidorn T, Kuever J. 2000. Halothiobacillus kellyi sp. nov., a mesophilic, obligately chemolithoautotrophic, sulfuroxidizing bacterium isolated from a shallowwater hydrothermal vent in the Aegean Sea, and emended description of the genus Halothiobacillus. Int J Syst Evol Microbiol 50:1229–1237.
   PubMed Web of Science ®Google Scholar
• Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512–526.
   PubMed Web of Science ®Google Scholar
• Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 30:2725–2729.
   Web of Science ®Google Scholar
• Tarasov VG, Bogovski S, Muzyka V. 2003. Biochemical characteristics of algal bacterial mats and invertebrates from shallow-waters hydrothermal fields of the West Pacific Ocean. Aquat Sci 65:73–80.
   Web of Science ®Google Scholar
• Tarasov VG, Gebruk AV, Mironov AN, Moskalev LI. 2005. Deep sea and shallow-water hydrothermal vent communities: two different phenomena? Chem Geol 224:5–39.
   Web of Science ®Google Scholar
• Tor JM, Amend JP, Lovley DR. 2003. Metabolism of organic compounds in anaerobic, hydrothermal sulfate-reducing marine sediments. Environ Microbiol 5:583–591.
   PubMed Web of Science ®Google Scholar
• Tsubota J, Eshinimaev BTS, Khmelenina VN, Trotsenko YA. 2005. Methylothermus thermalis gen. nov., sp. nov., a novel moderately thermophilic obligate methanotroph from a hot spring in Japan. Int J Syst Evol. Microbiol 55:1877–1884.
   PubMed Web of Science ®Google Scholar
• Weisburg WG, Barns SM, Pelletier DA, Lane DJ. 1991. 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173:697–703
   PubMed Web of Science ®Google Scholar
• Wright, ES, Yilmaz, LS, Noguera, DR 2012. DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences. Applied and environmental microbiology, 78:717–725.
   Google Scholar
• Zhang Y, Zhao Z, Chen CT, Tang K, Su J, Jiao N. 2012. Sulfur metabolizing microbes dominate microbial communities in Andesite-hosted shallow-sea hydrothermal systems. PLoS One 7:e44593.
   PubMed Web of Science ®Google Scholar