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Articles

Influence of Water Flow on In Situ Rates of Bacterial Fe(II) Oxidation

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Pages 67-75 | Received 11 May 2019, Accepted 28 Aug 2019, Published online: 09 Sep 2019

References

  • Arora B, Şengör SS, Spycher NF, Steefel CI. 2015. A reactive transport benchmark on heavy metal cycling in lake sediments. Comput Geosci 19(3):613–633.
  • Brun A, Engesgaard P. 2002. Modelling of transport and biogeochemical processes in pollution plumes: literature review and model development. J Hydrol 256(3–4):211–227.
  • Bruun A-M, Finster K, Gunnlaugsson HP, N⊘Rnberg P, Friedrich MW. 2010. A comprehensive investigation on iron cycling in a freshwater seep including microscopy, cultivation and molecular community analysis. Geomicrobiol J 27(1):15–34.
  • Carr SD, Easton RM, Jamieson RA, Culshaw NG. 2000. Geologic transect across the Grenville orogen of Ontario and New York. Can J Earth Sci 37(2–3):193–216.
  • Chan CS, Fakra SC, Emerson D, Fleming EJ, Edwards KJ. 2011. Lithotrophic iron-oxidizing bacteria produce organic stalks to control mineral growth: implications. ISME J 5(4):717–727.
  • Datry T, Larned ST, Tockner K. 2014. Intermittent rivers: a challenge for freshwater ecology. BioScience 64(3):229–235.
  • Druschel GK, Emerson D, Sutka R, Suchecki P, Luther IIG. 2008. Low-oxygen and chemical kinetic constraints on the geochemical niche of neutrophilic iron(II) oxidizing microorganisms. Geochim Cosmochim Acta 72(14):3358–3370.
  • Edwards BA, Shirokova VL, Enright AML, Ferris FG. 2018. Dependence of in situ bacterial Fe(II)-oxidation and Fe(III)-precipitation on sequential reactive transport. Geomicrobiol J 35(6):503–510.
  • Emerson D. 2012. Biogeochemistry and microbiology of microaerobic Fe(II) oxidation. Biochem Soc Trans 40(6):1211–1216.
  • Emerson D, Fleming EJ, McBeth JM. 2010. Iron-oxidizing bacteria: an environmental and genomic perspective. Annu Rev Microbiol 64:561–583.
  • Emerson D, Weiss JV. 2004. Bacterial iron oxidation in circumneutral freshwater habitats: findings from the field and the laboratory. Geomicrobiol J 21(6):405–414.
  • Enright AML, Edwards BA, Ferris FG. 2019. Long range correlation in redox potential fluctuations signals energetic efficiency of bacterial Fe(II) oxidation. Sci Rep 9(1):4018.
  • Feiner K, Lowry CS. 2015. Simulating the effects of a beaver dam on regional groundwater flow through a wetland. J Hydrol Reg Stud 4:675–685.
  • Ferguson RI. 2012. River channel slope, flow resistance, and gravel entrainment thresholds. Water Resour Res 48:W05517.
  • Ferris FG, Enright AM, Fortin D, Clark ID. 2016. Rates of Fe(II)-oxidation and solubility of bacteriogenic iron oxides. Geomicrobiol J 33(3–4):237–242.
  • Fleming EJ, Cetinić I, Chan CS, King DW, Emerson D. 2014. Ecological succession among iron-oxidizing bacteria. ISME J 8(4):804–815.
  • Fleming EJ, Langdon AE, Martinez-Garcia M, Stepanauskas R, Poulton NJ, Masland EDP, Emerson D. 2011. What’s new is old: resolving the identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH. PLoS One 6(3):e17769.
  • Gadd GM. 2010. Metals, minerals and microbes: geomicrobiology and bioremediation. Microbiology (Reading, Engl) 156(Pt 3):609–643.
  • Gault AG, Langley S, Ibrahim A, Renaud R, Takahashi Y, Boothman C, Lloyd JR, Clark ID, Ferris FG, Fortin D. 2012. Seasonal changes in mineralogy, geochemistry and microbial community of bacteriogenic iron oxides (BIOS) deposited in a circumneutral wetland. Geomicrobiol J 29(2):161–172.
  • Hao L, Li J, Kappler A, Obst M. 2013. Mapping of heavy metal ion sorption to cell-extracellular polymeric substance-mineral aggregates by using metal-selective fluorescent probes and confocal laser scanning microscopy. Appl Environ Microbiol 79(21):6524–6534.
  • Harvey JW, Saiers JE, Newlin JT. 2005. Solute transport and storage mechanisms in wetlands of the Everglades, south Florida. Water Resour Res 41:W05009.
  • Hemond HF, Fechner-Levy EJ. 2000. Chemical Fate and Transport in the Environment. 2nd ed. San Diego: Academic Press.
  • Huss M, Hock R. 2018. Global-scale hydrological response to future glacier mass loss. Nat Clim Change 8(2):135–140.
  • James RE, Ferris FG. 2004. Evidence for microbial-mediated iron oxidation at a neutrophilic groundwater spring. Chem Geol 212(3–4):301–311.
  • Johnson KW, Carmichael MJ, McDonald W, Rose N, Pitchford J, Windelspecht M, Karatan E, Bräuer SL. 2012. Increased abundance of Gallionella spp., Leptothrix spp. and total bacteria in response to enhanced Mn and Fe concentrations in a disturbed Southern Appalachian high elevation wetland. Geomicrobiol J 29(2):124–138.
  • Katul G, Wiberg P, Albertson J, Hornberger G. 2002. A mixing layer theory for flow resistance in shallow streams. Water Resour Res 38:1–8.
  • Kennedy CB, Gault AG, Fortin D, Clark ID, Ferris FG. 2011. Retention of iodide by bacteriogenic iron oxides. Geomicrobiol J 28(5–6):387–395.
  • Kohler TJ, Stanish LF, Crisp SW, Koch JC, Liptzin D, Baeseman JL, McKnight DM. 2015. Life in the main channel: long-term hydrologic control of microbial mat abundance in McMurdo dry valley streams, Antarctica. Ecosystems 18(2):310–327.
  • Krachler RF, Krachler R, Stojanovic A, Wielander B, Herzig A. 2009. Effects of pH on aquatic biodegradation processes. Biogeosci Discuss 6(1):491–514.
  • Langley S, Gault AG, Ibrahim A, Takahashi Y, Renaud R, Fortin D, Clark ID, Ferris FG. 2009. Sorption of strontium onto bacteriogenic iron oxides. Environ Sci Technol 43(4):1008–1014.
  • Lewis CFM, Karrow PF, Blasco SM, McCarthy FMG, King JW, Moore TC, Rea DK. 2008. Evolution of lakes in the Huron basin: deglaciation to present. Aquat Ecosyst Health 11:127–136.
  • Lightbody AF, Avener ME, Nepf HM. 2008. Observations of short-circuiting flow paths within a free-surface wetland in Augusta, Georgia, U.S.A. Limnol Oceanogr 53(3):1040–1053.
  • Malits A, Peters F, Bayer-Giraldi M, Marrasé C, Zoppini A, Guadayol O, Alcaraz M. 2004. Effects of small-scale turbulence on bacteria: a matter of size. Microb Ecol 48(3):287–299.
  • Mitsunobu S, Shiraishi F, Makita H, Orcutt BN, Kikuchi S, Jorgensen BB, Takahashi Y. 2012. Bacteriogenic Fe(III) (Oxyhydr)oxides characterized by synchrotron microprobe coupled with spatially resolved phylogenetic analysis. Environ Sci Technol 46(6):3304–3311.
  • Neubauer SC, Emerson D, Megonigal JP. 2002. Life at the energetic edge: kinetics of circumneutral iron oxidation by lithotrophic iron-oxidizing bacteria isolated from the wetland-plant rhizosphere. Appl Environ Microb 68(8):3988–3995.
  • Noss C, Lorke A. 2016. Roughness, resistance, and dispersion: relationships in small streams. Water Resour Res 52(4):2802–2821.
  • Oldham CE, Sturman JJ. 2001. The effect of emergent vegetation on convective flushing in shallow wetlands: scaling and experiments. Limnol Oceanogr 46(6):1486–1493.
  • Park B, Dempsey BA. 2005. Heterogeneous oxidation of Fe(II) on ferric oxide at neutral pH and a low partial pressure of O2. Environ Sci Technol 39(17):6494–6500.
  • Parkhurst DL, Appelo C. 2013. Description of input and examples for PHREEQC version 3—a computer program for speciation, batch-reaction, one-dimensional transport, and inverse geochemical calculations: U.S. Geological Survey Techniques and Methods, Book 6, Chapter A43, p497. Denver, CO: U.S. Geological Survey.
  • Rentz JA, Kraiya C, Luther GW, Emerson D. 2007. Control of ferrous iron oxidation within circumneutral microbial iron mats by cellular activity and autocatalysis. Environ Sci Technol 41(17):6084–6089.
  • Runkel RL. 1996. Solution of the advection-dispersion equation: continuous load of finite duration. J Environ Eng ASCE 122(9):830–832.
  • Schieber J, Glamoclija M. 2007. Microbial mats built by iron bacteria: a modern example from southern Indiana. In: Schieber J, Bose P, Eriksson P, Banerjee S, Sarkar S, Altermann W, Catuneanu O (editors). Atlas of Microbial Mat Features Preserved Within the Siliciclastic Rock Record. New York: Elsevier; p. 233–244.
  • Shirokova VL, Enright AML, Kennedy CB, Ferris FG. 2016. Thermal intensification of microbial Fe(II)/Fe(III) redox cycling in a pristine shallow sand aquifer on the Canadian Shield. Water Res 106:604–612.
  • Shirokova VL, Ferris FG. 2013. Microbial diversity and biogeochemistry of a shallow pristine Canadian Shield groundwater system. Geomicrobiol J 30(2):140–149.
  • Sokáč M. 2017. Determination of the longitudinal dispersion coefficient in lowland streams with occurrence of dead zones. Paper presented at: “Environmental Engineering” 10th International Conference, Vilnius Gediminas Technical University; April 27–28; Vilnius, Lithuania.
  • St Clair B, Pottenger J, Debes R, Hanselmann K, Shock E. 2019. Distinguishing biotic and abiotic iron oxidation at low temperatures. ACS Earth Space Chem 3(6):905–921.
  • Steefel CI, DePaolo DJ, Lichtner PC. 2005. Reactive transport modeling: an essential tool and a new research approach for the Earth sciences. Earth Planet Sci Lett 240(3–4):539–558.
  • Stern DA, Khanbilvardi R, Alair JC, Richardson W. 2001. Description of flow through a natural wetland using dye tracer tests. Ecol Eng 18(2):173–184.
  • Stookey LL. 1970. Ferrozine—a new spectrophotometric reagent for iron. Anal Chem 42(7):779–781.
  • Stumm W, Morgan JJ. 1996. Aquatic Chemistry. New York: Wiley.
  • Vollrath S, Behrends T, Koch CB, Van Cappellen P. 2013. Effects of temperature on rates and mineral products of microbial Fe(II) oxidation by Leptothrix cholodnii at microaerobic conditions. Geochim Cosmochim Acta 108:107–124.
  • Vollrath S, Behrends T, Van Cappellen P. 2012. Oxygen dependency of neutrophilic Fe(II) oxidation by Leptothrix differs from abiotic reaction. Geomicrobiol J 29(6):550–560.
  • Wallis SG, Bonardi D, Silavwe DD. 2014. Solute transport routing in a small stream. *Hydrol Sci J 59(10):1894–1907.
  • Watteaux R, Stocker R, Taylor JR. 2015. Sensitivity of the rate of nutrient uptake by chemotactic bacteria to physical and biological parameters in a turbulent environment. J Theor Biol 387:120–135.

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