150
Views
14
CrossRef citations to date
0
Altmetric
Original Articles

Stimulation of Methanotroph Activity by Cu-Substituted Borosilicate Glass

, , , , &
Pages 1-10 | Received 21 Sep 2009, Accepted 08 Jan 2010, Published online: 07 Jan 2011

REFERENCES

  • Adriano , DC. 1986 . Trace Elements in the Terrestrial Environment , New York : Spring-Verlag .
  • Alexander , M. 1999 . Biodegradation and Bioremediation , New York : Academic Press .
  • Balasubramanian , R and Rosenzweig , A C . 2008 . Copper methanobactin: a molecule whose time is come . Curr Opin Chem Biol , 12 : 245 – 249 .
  • Bender , M and Conrad , R . 1994 . Methane oxidation activity in various soils and freshwater sediments: Occurrence, characteristics, vertical profiles and distribution on grain size fractions . J Geophys Res , 99 : 16531 – 16540 .
  • Bender , M and Conrad , R . 1995 . Effect of CH4 concentrations and soil conditions on the induction of CH4 oxidation activity . Soil Biol Biochem , 27 : 1517 – 1527 .
  • Bennett , P C , Rogers , J R , Choi , W J and Hiebert , F K . 2001 . Silicates, silicate weathering, and microbial ecology . Geomicrobiol J , 18 : 3 – 19 .
  • 1997 . Bourcier, personal communication
  • Brantley , S L , Liermann , L , Bau , M and Wu , S . 2001 . Uptake of trace metals and rare Earth elements from hornblende by a soil bacterium . Geomicrobiol J , 18 : 37 – 61 .
  • Chander , K , Brookes , P C and Harding , S A . 1995 . Microbial biomass dynamics following addition of metal-enriched sewage sludges to a sandy loam . Soil Biol Biochem , 27 : 1409 – 1421 .
  • Devlin , JF. 1994 . A simple and powerful method of parameter estimation using simplex optimization . Ground Water , 32 : 323 – 327 .
  • Faure , G. 1998 . Principles and Applications of Geochemistry , 2nd Edition , Upper Saddle River, NJ : Prentice Hall .
  • Fowle , D A , Kulczycki , E and Roberts , J A . 2004 . “ Linking bacteria-metal interactions to mineral attachment: A role for outer sphere complexation of cations? ” . In Water-Rock Interaction Edited by: Wanty , R B and Seal , R R . 1113 – 1117 . Proceedings of the Eleventh International Symposium on Water-Rock Interaction WRI-11, Saratoga Springs, NY, USA 27 June–2 July
  • Goudar , C T and Devlin , J F . 2001 . Nonlinear estimation of microbial and enzyme kinetic parameters from progress curve data . Water Environ Res , 73 : 260 – 265 .
  • Goyne , K W , Brantley , S L and Chorover , J . 2006 . Effects of organic acids and dissolved oxygen on apatite and chalcopyrite dissolution: Implications for using elements as organomarkers and oxymarkers . Chem Geol , 234 : 28 – 45 .
  • Hakemian , A S and Rosenzweig , A C . 2007 . The biochemistry of methane oxidation . Annu Rev Biochem , 76 : 223 – 241 .
  • Hanson , R S and Hanson , T E . 1996 . Methanotrophic bacteria . Microbiol Rev , 60 : 439 – 471 .
  • Hausrath , E M , Liermann , L J , House , C H , Ferry , J G and Brantley , S L . 2007 . The effect of methanogen growth on mineral substrates: Will Ni markers of methanogen-based communities be detectable in the rock record? . Geobiology , 5 : 49 – 61 .
  • Hersman , L , Maurice , P and Sposito , G . 1996 . Iron acquisition from hydrous Fe(III)-oxides by an aerobic Pseudomonas sp . Chem Geol , 132 : 25 – 31 .
  • Holmen , B A and Casey , W H . 1996 . Hydroxamate ligands, surface chemistry, and the mechanism of ligand-promoted dissolution of goethite [α-FeOOH(s)] . Geochim Cosmochim Acta , 60 : 4403 – 4416 .
  • Hoppert , M , Flies , C , Pohl , W , Gunzl , B and Schneider , J . 2004 . Colonization strategies of lithobiontic microorganisms on carbonate rocks . Environ Geol , 46 : 421 – 428 .
  • Kalinowski , B E , Liermann , L J , Givens , S and Brantley , S L . 2000 . Rates of bacteria-promoted solubilization of Fe from minerals: A review of problems and approaches . Chem Geol , 169 : 357 – 370 .
  • Kim , H J , Graham , D W , DiSpirito , A A , Alterman , M A , Galeva , N , Larive , C K , Asunskis , D and Sherwood , P MA . 2004 . Methanobactin, a copper-acquisition compound from methane-oxidizing bacteria . Science , 305 : 1612 – 1615 .
  • Kim , H J , Galeva , N , Larive , C K , Alterman , M and Graham , D W . 2005 . Purification and physical-chemical properties of methanobactin: A chalkophore from Methylosinus trichosporium OB3b . Biochem , 44 : 5140 – 5148 .
  • Knapp , C W , Fowle , D A , Kulczycki , E , Roberts , J A and Graham , D W . 2007 . Methane monooxygenase gene expression mediated by methanobactin in the presence of mineral copper sources . PNAS , 104 : 12040 – 12045 .
  • Knecht , M R and Wright , D W . 2004 . Amine-terminated dendrimers as biomimetic templates for silica nanosphere formation . Langmuir , 20 : 4728 – 4732 .
  • Kraemer , SM. 2004 . Iron oxide dissolution and solubility in the presence of siderophores . Aqu Sci , 66 : 3 – 18 .
  • Kulczycki , E , Ferris , F G and Fortin , D . 2002 . Impact of cell wall structure on the behavior of bacterial cells as sorbents of cadmium and lead . Geomicrob J , 19 : 553 – 565 .
  • Kulczycki , E , Fowle , D , Fortin , D and Ferris , F G . 2005 . Sorption of cadmium and lead by bacteria-ferrihydrite composites . Geomicrob J , 22 : 299 – 310 .
  • Kulczycki , E , Fowle , D A , Knapp , C , Graham , D W and Roberts , J A . 2007 . Methanobactin-promoted dissolution of Cu-substituted borosilicate glass . Geobiology , 5 : 251 – 263 .
  • Lasaga , AC. 1981 . “ Rate laws of chemical reactions ” . In Kinetics of Geochemical Processes. Reviews in Mineralogy , Edited by: Lasaga , A C and Kirkpartick , R J . Vol. 8 , 1 – 67 . Washington, DC : Mineralogical Society of America .
  • Liermann , L J , Kalinowski , B E , Brantley , S L and Ferry , J G . 2000 . Role of bacterial siderophores in dissolution of hornblende . Geochim Cosmochim Acta. , 64 : 587 – 602 .
  • Liermann , L J , Guynn , R L , Anbar , A and Brantley , S L . 2005 . Production of a molybdophore during metal-targeted dissolution of silicates by soil bacteria . Chem Geol , 220 : 285 – 302 .
  • Morey , G W , Fournier , R O and Rowe , J J . 1964 . The solubility of amorphous silica at 25°C . J Geophys Res , 69 : 1995 – 2002 .
  • Neaman , A , Chorover , J and Brantley , S L . 2005a . Element mobility patterns record organic ligands in soils on early Earth . Geology , 33 : 117 – 120 .
  • Neaman , A , Chorover , J and Brantley , S L . 2005b . Implications of the evolution of organic acid moieties for basalt weathering over geologic time . Amer J Sci , 305 : 147 – 185 .
  • Roberts , JA. 2004 . Inhibition and enhancement of microbial surface colonization: The role of silicate composition . Chem Geol , 212 : 313 – 327 .
  • Roberts , J A , Hughes , B T and Fowle , D A . 2004 . “ Micro-scale mineralogic controls on microbial attachment to silicate surfaces: Iron and phosphate mineral inclusions ” . In Water-Rock Interaction Edited by: Wanty , R B and Seal , R R . 1149 – 1153 . Proceedings of the Eleventh International Symposium on Water-Rock Interaction WRI-11,Saratoga Springs, NY, USA 27 June—2 July
  • Roberts , J A , Fowle , D A , Hughes , B T and Kulczycki , E . 2006 . Attachment behavior of Shewanella putrefaciens to magnetite under aerobic and anaerobic conditions . Geomicrobiol J , 23 : 631 – 640 .
  • Rogers , J R , Bennett , P C and Choi , W J . 1998 . Feldspars as a source of nutrients for microorganisms . Amer Min , 83 : 1532 – 1540 .
  • Rogers , J R and Bennett , P C . 2004 . Mineral stimulation of subsurface microorganisms: Release of limiting nutrients from silicates . Chem Geol , 203 : 91 – 108 .
  • Schaperdoth , I , Liermann , L J and Brantley , S L . 2007 . The effect of polymeric substances on apatite reactivity in the presence of a freshwater cyanobacterium . Geomicrobiol J , 24 : 79 – 91 .
  • Shacklette , H T and Boerngen , J G . 1984 . Element concentrations in soils and other surficial materials of the conterminous United States. USGS Prof. Pap. 1270 , Washington, DC : U.S. Gov. Print. Office .
  • Schnell , S and Maini , P K . 2003 . A century of enzyme kinetics: Reliability of the Km and Vmax estimates . Comm Theor Biol , 8 : 169 – 187 .
  • Stevens , L and Price , N C . 1999 . Fundamentals of Enzymology: The Cell and Molecular Biology of Catalytic Proteins , Oxford : Oxford University Press .
  • Tourtelot , HA. 1971 . “ Chemical compositions of rock types as factors in our environment ” . In Environmental Geochemistry in Health and Disease , Edited by: Cannon , H L and Hopps , H C . Boulder, CO : Geological Society of America .
  • Uroz , S , Calvaruso , C , Turpault , M-P and Frey-Klett , P . 2009 . Mineral weathering by bacteria: ecology, actors and mechanisms . Trends Microbiol , 17 : 378 – 387 .
  • Vandevivere , P and Bevaye , P . 1993 . Improved preservation of bacterial exopolymers for scanning electron microscopy . J Microsc , 167 : 323 – 330 .
  • Welch , S A and Ullman , W J . 1993 . The effect of organic acids on plagioclase dissolution rates and stoichiometry . Geochim Cosmochim Acta. , 57 : 2725 – 2736 .
  • Welch , S A , Barker , W W and Banfield , J F . 1999 . Microbial extracellular polysaccharides and plagioclase dissolution . Geochim Cosmochim Acta , 63 : 1405 – 1419 .
  • Welch , S A , Taunton , A E and Banfield , J F . 2002 . Effect of microorganisms and microbial metabolites on apatite dissolution . Geomicrobiol J , 19 : 343 – 367 .
  • Whittenbury , R , Phillips , K C and Wilkinson , J G . 1970 . Enrichment, isolation and some properties of methane utilizing bacteria . J Gen Microbiol , 61 : 205 – 218 .
  • Wightman , P G and Fein , J B . 2004 . The effect of bacterial cell wall adsorption on mineral solubilities . Chem Geol , 212 : 247 – 254 .
  • Yu , W. , Dodds , W K , Banks , K , Skalsky , J and Strauss , EA. 1995 . Optimal staining and sample storage time for direct microscopic enumeration of total and active bacteria in soil with two fluorescent dyes . Appl Environ Microbiol , 61 : 3367 – 3372 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.