240
Views
2
CrossRef citations to date
0
Altmetric
Research Article

Comparison of adult census size and effective population size support the need for continued protection of two Solomon Island endemics

, , , &
Pages 45-54 | Received 01 Sep 2020, Accepted 05 Apr 2021, Published online: 25 May 2021

References

  • Bayliss-Smith, T., and Whitmore, T. C. (2003). Rainforest composition and histories of human disturbance in Solomon Islands. Ambio 32(5), 346–352. doi:10.1579/0044-7447-32.5.346
  • Bennett, J. A. (2000). ‘Pacific Forest: A History of Resource Control and Contest in the Solomon Islands C. 1800–1997.’ (Brill: Leiden, Netherlands.)
  • Brooks, T., Lens, L., Barnes, J., Barnes, R., Kihuria, J. K., and Wilder, C. (1998). The conservation status of the forest birds of the Taita Hills, Kenya. Bird Conservation International 8(2), 119–139. doi:10.1017/S0959270900003221
  • Buckland, S. T. (2006). Point-transect surveys for songbirds: Robust methodologies. The Auk 123(2), 345–357. doi:10.1093/auk/123.2.345
  • Buckland, S. T., Anderson, D. R., Burnham, K. P., Laake, J. L., Borchers, D. L., and Thomas, L. (2004). ‘Advanced Distance Sampling.’ (Oxford University Press: Oxford, UK.)
  • Capelli, C., Wilson, J. F., Richards, M., Stumpf, M. P., Gratrix, F., Oppenheimer, S., Underhill, P., et al. (2001). A predominantly indigenous paternal heritage for the Austronesian-speaking peoples of insular Southeast Asia and Oceania. The American Journal of Human Genetics 68(2), 432–443. doi:10.1086/318205
  • Ceballos, G., Ehrlich, P. R., Barnosky, A. D., García, A., Pringle, R. M., and Palmer, T. M. (2015). Accelerated modern human–induced species losses: Entering the sixth mass extinction. Science Advances 1(5), e1400253. doi:10.1126/sciadv.1400253
  • Charlesworth, B. (2009). Effective population size and patterns of molecular evolution and variation. Nature Reviews Genetics 10(3), 195–205. doi:10.1038/nrg2526
  • Cheke, A. S. (2013). Extinct birds of the Mascarenes and Seychelles - a review of the causes of extinction in the light of an important new publication on extinct birds. Phelsuma 21, 4–19.
  • Cornetti, L., Valente, L. M., Dunning, L. T., Quan, X., Black, R. A., Hébert, O., and Savolainen, V. (2015). The genome of the “great speciator” provides insights into bird diversification. Genome Biology and Evolution 7(9), 2680–2691. doi:10.1093/gbe/evv168
  • Courchamp, F., Hoffmann, B. D., Russell, J. C., Leclerc, C., and Bellard, C. (2014). Climate change, sea-level rise, and conservation: Keeping island biodiversity afloat. Trends in Ecology & Evolution 29(3), 127–130. doi:10.1016/j.tree.2014.01.001
  • Cowles, S. A., and Uy, J. A. C. (2019). Rapid, complete reproductive isolation in two closely related Zosterops White-eye bird species despite broadly overlapping ranges. Evolution 73(8), 1647–1662. doi:10.1111/evo.13797
  • Crow, J. F., and Kimura, M. (1970). ‘An Introduction to Population Genetics Theory.’ (Harper & Row: New York, NY.)
  • Danecek, P., Auton, A., Abecasis, G., Albers, C. A., Banks, E., DePristo, M. A., Handsaker, R. E., et al. (2011). The variant call format and VCFtools. Bioinformatics 27(15), 2156–2158. doi:10.1093/bioinformatics/btr330
  • Danielsen, F., Filardi, C. E., Jønsson, K. A., Kohaia, V., Krabbe, N., Kristensen, J. B., Moyle, R. G., et al. (2010). Endemic avifaunal biodiversity and tropical forest loss in Makira, a mountainous Pacific island. Singapore Journal of Tropical Geography 31, 100–114. doi:10.1111/j.1467-9493.2010.00386.x
  • Diamond, J. M., Gilpin, M. E., and Mayr, E. (1976). Species-distance relation for birds of the Solomon Archipelago, and the paradox of the great speciators. Proceedings of the National Academy of Sciences, U.S.A 73(6), 2160–2164. doi:10.1073/pnas.73.6.2160
  • Dirzo, R., Young, H. S., Galetti, M., Ceballos, G., Isaac, N. J., and Collen, B. (2014). Defaunation in the Anthropocene. Science 345(6195), 401–406. doi:10.1126/science.1251817
  • Do, C., Waples, R. S., Peel, D., Macbeth, G., Tillett, B. J., and Ovenden, J. R. (2014). NeEstimator v2: Re‐implementation of software for the estimation of contemporary effective population size (Ne) from genetic data. Molecular Ecology Resources 14(1), 209–214. doi:10.1111/1755-0998.12157
  • Dutson, G. (2011). ‘Birds of Melanesia: The Bismarcks, Solomons, Vanuatu and New Caledonia.’ (Christopher Helm: London, UK.)
  • Feeley, K. J., and Silman, M. R. (2010). Land‐use and climate change effects on population size and extinction risk of Andean plants. Global Change Biology 16(12), 3215–3222. doi:10.1111/j.1365-2486.2010.02197.x
  • Fisher, R. A. (1930). ‘The Genetical Theory of Natural Selection.’ pp. xiv, 272. (The Clarendon press: Oxford, UK.)
  • Frankham, R. (1998). Inbreeding and extinction: Island populations. Conservation Biology 12(3), 665–675. doi:10.1046/j.1523-1739.1998.96456.x
  • Frankham, R., Ballou, S. E. J. D., Briscoe, D. A., and Ballou, J. D. (2002). ‘Introduction to Conservation Genetics.’ (Cambridge University Press: Cambridge, Mass.)
  • Frazer, I. (1997). The struggle for control of Solomon Island forests. The Contemporary Pacific 9(1), 39–72.
  • Global Witness. (2018). ‘Paradise Lost: How China Can Help the Solomon Islands Protect Its Forests.’ (London, UK.)
  • Gorelick, N., Hancher, M., Dixon, M., Ilyushchenko, S., Thau, D., and Moore, R. (2017). Google Earth Engine: Planetary-scale geospatial analysis for everyone. Remote Sensing of Environment 202, 18–27. doi:10.1016/j.rse.2017.06.031
  • Grabherr, M. G., Russell, P., Meyer, M., Mauceli, E., Alföldi, J., Di Palma, F., and Lindblad-Toh, K. (2010). Genome-wide synteny through highly sensitive sequence alignment: Satsuma. Bioinformatics 26(9), 1145–1151. doi:10.1093/bioinformatics/btq102
  • Grueber, C. E., and Jamieson, I. G. (2011). Low genetic diversity and small population size of Takahe Porphyrio hochstetteri on European arrival in New Zealand. Ibis 153(2), 384–394. doi:10.1111/j.1474-919X.2011.01110.x
  • Hedgecock, D. (1994). Does variance in reproductive success limit effective population sizes of marine organisms. In ‘Genetics and Evolution of Aquatic Organisms.’ (Ed. A. R. Beaumont.) pp. 122–134. (Chapman & Hall: New York, NY.)
  • Husemann, M., Ulrich, W., and Habel, J. C. (2014). The evolution of contact calls in isolated and overlapping populations of two white-eye congeners in East Africa (Aves, Zosterops). BMC Evolutionary Biology 14(1), 115. doi:10.1186/1471-2148-14-115
  • Johnson, C. N., Balmford, A., Brook, B. W., Buettel, J. C., Galetti, M., Guangchun, L., and Wilmshurst, J. M. (2017). Biodiversity losses and conservation responses in the Anthropocene. Science 356(6335), 270–275. doi:10.1126/science.aam9317
  • Johnson, J. A., Bellinger, M. R., Toepfer, J. E., and Dunn, P. (2004). Temporal changes in allele frequencies and low effective population size in greater prairie‐chickens. Molecular Ecology 13(9), 2617–2630. doi:10.1111/j.1365-294X.2004.02264.x
  • Johnson, T., and Stattersfield, A. (1990). A global review of island endemic birds. Ibis 132(2), 167–180. doi:10.1111/j.1474-919X.1990.tb01036.x
  • Katovai, E., Burley, A. L., and Mayfield, M. M. (2012). Understory plant species and functional diversity in the degraded wet tropical forests of Kolombangara Island, Solomon Islands. Biological Conservation 145(1), 214–224. doi:10.1016/j.biocon.2011.11.008
  • Katovai, E., Edwards, W., and Laurance, W. F. (2015). Dynamics of logging in Solomon Islands: The need for restoration and conservation alternatives. Tropical Conservation Science 8(3), 718–731. doi:10.1177/194008291500800309
  • Korneliussen, T. S., Albrechtsen, A., and Nielsen, R. (2014). ANGSD: Analysis of next generation sequencing data. BMC Bioinformatics 15(1), 356. doi:10.1186/s12859-014-0356-4
  • Lens, L., Van Dongen, S., Norris, K., Githiru, M., and Matthysen, E. (2002). Avian persistence in fragmented rainforest. Science 298(5596), 1236–1238. doi:10.1126/science.1075664
  • Lischer, H. E., and Excoffier, L. (2012). PGDSpider: An automated data conversion tool for connecting population genetics and genomics programs. Bioinformatics 28(2), 298–299. doi:10.1093/bioinformatics/btr642
  • Manthey, J. D., Oliveros, C. H., Andersen, M. J., Filardi, C. E., and Moyle, R. G. (2020). Gene flow and rapid differentiation characterize a rapid insular radiation in the southwest Pacific (Aves: Zosterops). Evolution 74(8), 1788–1803. doi:10.1111/evo.14043
  • Mayr, E., and Diamond, J. M. (2001). ‘The Birds of Northern Melanesia.’ (Oxford University Press: New York.)
  • McCallum, H., Kikkawa, J., and Catterall, C. (2000). Density dependence in an island population of silvereyes. Ecology Letters 3(2), 95–100. doi:10.1046/j.1461-0248.2000.00120.x
  • McKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A., Garimella, K., et al. (2010). The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Research 20(9), 1297–1303. doi:10.1101/gr.107524.110
  • Miller, D. L., Rexstad, E., Thomas, L., Marshall, L., and Laake, J. L. (2019). Distance sampling in R. Journal of Statistical Software 89(1), 1–28. doi:10.18637/jss.v089.i01.
  • Mittermeier, J. C., Dutson, G., James, R. E., Davies, T. E., Tako, R., and Uy, J. A. C. (2018). The avifauna of Makira, Solomon Islands. Wilson Journal of Ornithology 130(1), 235–255. doi:10.1676/16-194.1
  • Moyle, R. G., Filardi, C. E., Smith, C. E., and Diamond, J. (2009). Explosive Pleistocene diversification and hemispheric expansion of a “great speciator”. Proceedings of the National Academy of Sciences 106(6), 1863–1868. doi:10.1073/pnas.0809861105
  • Mulwa, R. K., Bennun, L. A., Ogol, C. K., and Lens, L. (2007). Population status and distribution of Taita White-eye Zosterops silvanus in the fragmented forests of Taita Hills and Mount Kasigau, Kenya. Bird Conservation International 17(2), 141–150. doi:10.1017/S0959270907000664
  • Newman, D., and Pilson, D. (1997). Increased probability of extinction due to decreased genetic effective population size: Experimental populations of Clarkia pulchella. Evolution 51(2), 354–362. doi:10.1111/j.1558-5646.1997.tb02422.x
  • Nunney, L. (1993). The influence of mating system and overlapping generations on effective population size. Evolution 47(5), 1329–1341. doi:10.1111/j.1558-5646.1993.tb02158.x
  • Odom, K. J., and Benedict, L. (2018). A call to document female bird songs: Applications for diverse fields. The Auk: Ornithological Advances 135(2), 314–325. doi:10.1642/AUK-17-183.1
  • Odom, K. J., Hall, M. L., Riebel, K., Omland, K. E., and Langmore, N. E. (2014). Female song is widespread and ancestral in songbirds. Nature Communications 5(1), 1–6. doi:10.1038/ncomms4379
  • Palstra, F. P., and Fraser, D. J. (2012). Effective/census population size ratio estimation: A compendium and appraisal. Ecology and Evolution 2(9), 2357–2365. doi:10.1002/ece3.329
  • Palstra, F. P., and Ruzzante, D. E. (2008). Genetic estimates of contemporary effective population size: What can they tell us about the importance of genetic stochasticity for wild population persistence? Molecular Ecology 17(15), 3428–3447. doi:10.1111/j.1365-294X.2008.03842.x
  • Pikacha, P., Morrison, C., and Richards, S. J. (2008). ‘Frogs of the Solomon Islands.’ (Institute of Applied Sciences, University of South Pacific: Fiji.)
  • Pruett, C., Johnson, J., Larsson, L., Wolfe, D., and Patten, M. (2011). Low effective population size and survivorship in a grassland grouse. Conservation Genetics 12(5), 1205–1214. doi:10.1007/s10592-011-0223-z
  • R Core Team (2018). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.
  • Ricketts, T. H., Dinerstein, E., Boucher, T., Brooks, T. M., Butchart, S. H., Hoffmann, M., Lamoreux, J. F., et al. (2005). Pinpointing and preventing imminent extinctions. Proceedings of the National Academy of Sciences 102(51), 18497–18501. doi:10.1073/pnas.0509060102
  • Rochette, N. C., Rivera‐Colón, A. G., and Catchen, J. M. (2019). Stacks 2: Analytical methods for paired‐end sequencing improve RADseq‐based population genomics. Molecular Ecology 28(21), 4737–4754. doi:10.1111/mec.15253
  • Steadman, D. W. (2006). ‘Extinction and Biogeography of Tropical Pacific Birds.’ (University of Chicago Press: Chicago, IL, USA.)
  • Tajima, F. (1989a). The effect of change in population size on DNA polymorphism. Genetics 123(3), 597–601. doi:10.1093/genetics/123.3.597
  • Tajima, F. (1989b). Statistical method for testing the neutral mutation hypothesis by DMA polymorpism. Genetics 123, 585–595. doi:10.1093/genetics/123.3.585
  • Van Balen, S. (2008). Family Zosteropidae (white-eyes). In ‘Handbook of the Birds of the World. Vol. 13’. pp. 402–485 (Lynx Edicions: Barcelona, Spain).
  • Walter, R., and Sheppard, P. (2006). Archaeology in Melanesia: a case study from the Western Province of the Solomon Islands. In 'Archaeology of Oceania: Australia and the Pacific Islands.' (Ed I. Lilley) pp. 137–159 (Blackwell Publishing: Oxford, UK).
  • Wang, J., Santiago, E., and Caballero, A. (2016). Prediction and estimation of effective population size. Heredity 117(4), 193–206. doi:10.1038/hdy.2016.43
  • Waples, R. K., Larson, W. A., and Waples, R. S. (2016). Estimating contemporary effective population size in non-model species using linkage disequilibrium across thousands of loci. Heredity 117(4), 233–240. doi:10.1038/hdy.2016.60
  • Waples, R. S., and Do, C. (2008). LDNE: A program for estimating effective population size from data on linkage disequilibrium. Molecular Ecology Resources 8(4), 753–756. doi:10.1111/j.1755-0998.2007.02061.x
  • Waples, R. S., Grewe, P. M., Bravington, M. W., Hillary, R., and Feutry, P. (2018). Robust estimates of a high Ne/N ratio in a top marine predator, southern bluefin tuna. Science Advances 4(7), eaar7759. doi:10.1126/sciadv.aar7759
  • Weeks, B. C., and Claramunt, S. (2014). Dispersal has inhibited avian diversification in Australasian archipelagoes. Proceedings of the Royal Society of London, Series B 281, 20141257.
  • Weeks, B. C., Diamond, J., Sweet, P. R., Smith, C., Scoville, G., Zinghite, T., and Filardi, C. E. (2017). New behavioral, ecological, and biogeographic data on the montane avifauna of Kolombangara, Solomon Islands. The Wilson Journal of Ornithology 129(4), 676–700. doi:10.1676/16-156.1
  • Wollstein, A., Lao, O., Becker, C., Brauer, S., Trent, R. J., Nürnberg, P., Stoneking, M., et al. (2010). Demographic history of Oceania inferred from genome-wide data. Current Biology 20(22), 1983–1992. doi:10.1016/j.cub.2010.10.040
  • Wright, S. (1931). Evolution in Mendelian populations. Genetics 16, 97–159. doi:10.1093/genetics/16.2.97

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.