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Theory and Methods

Discovering Findings That Replicate From a Primary Study of High Dimension to a Follow-Up Study

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Pages 1480-1492 | Received 01 Jul 2012, Published online: 19 Dec 2013

REFERENCES

  • Barrett , J. C. , Hansoul , S. , Nicolae , D. L. , Cho , J. H. , Duerr , R. H. , Rioux , J. D. , Brant , S. R. , Silverberg , M. S. , Taylor , K. D. , Barmada , M. M. , Bitton , A. , Dassopoulos , T. , Datta , L. W. , Green , T. , Griffiths , A. M. , Kistner , E. O. , Murtha , M. T. , Regueiro , M. D. , Rotter , J. I. , Schumm , L. P. , Steinhart , A. H. , Targan , S. R. , Xavier , R. J. , NIDDK IBD Genetics Consortium, Libioulle , C. , Sandor , C. , Lathrop , M. , Belaiche , J. , Dewit , O. , Gut , I. , Heath , S. , Laukens , D. , Mni , M. , Rutgeerts , P. , Van Gossum , A. , Zelenika , D. , Franchimont , D. , Hugot , J. P. , de Vos , M. , Vermeire , S. , Louis , E. , Belgian-French IBD Consortium, Wellcome Trust Case Control Consortium , Cardon , L. R. , Anderson , C. A. , Drummond , H. , Nimmo , E. , Ahmad , T. , Prescott , N. J. , Onnie , C. M. , Fisher , S. A. , Marchini , J. , Ghori , J. , Bumpstead , S. , Gwilliam , R. , Tremelling , M. , Deloukas , P. , Mansfield , J. , Jewell , D. , Satsangi , J. , Mathew , C. G. , Parkes , M. , Georges , M. and Daly , M. J. 2008 . Genome-Wide Association Defines More Than 30 Distinct Susceptibility Loci for Crohn's Disease . Nature Genetics , 40 : 955 – 962 .
  • Benjamini , Y. and Heller , R. 2008 . Screening for Partial Conjunction Hypotheses . Biometrics , 64 : 1215 – 1222 .
  • Benjamini , Y. , Heller , R. and Yekutieli , D. 2009 . Selective Inference in Complex Research . Philosophical Transactions of the Royal Society A , 267 : 1 – 17 .
  • Benjamini , Y. and Hochberg , Y. 1995 . Controlling the False Discovery Rate—A Practical and Powerful Approach to Multiple Testing . Journal of The Royal Statistical Society, Series B , 57 : 289 – 300 .
  • Benjamini , Y. and Hochberg , Y. 2000 . On the Adaptive Control of the False Discovery Fate in Multiple Testing With Independent Statistics . Journal of Educational and Behavioral Statistics , 25 : 60 – 83 .
  • Benjamini , Y. , Krieger , M. and Yekutieli , D. 2006 . Adaptive Linear Step-Up False Discovery Rate Controlling Procedures . Biometrika , 93 : 491 – 507 .
  • Benjamini , Y. and Yekutieli , D. 2001 . The Control of the False Discovery Rate in Multiple Testing Under Dependency . The Annals of Statistics , 29 : 1165 – 1188 .
  • Benjamini , Y. and Yekutieli , D. 2005 . Quantitative Trait Loci Analysis Using the False Discovery Rate . Genetics , 171 : 783 – 790 .
  • Bis , J. C. , DeCarli , C. , Smith , A. V. , van der Lijn , F. , Crivello , F. , Fornage , M. , Debette , S. , Shulman , J. M. , Schmidt , H. , Srikanth , V. , Schuur , M. , Yu , L. , Choi , S. H. , Sigurdsson , S. , Verhaaren , B. F. , DeStefano , A. L. , Lambert , J. C. , Jack , C. R., Jr. , Struchalin , M. , Stankovich , J. , Ibrahim-Verbaas , C. A. , Fleischman , D. , Zijdenbos , A. , den Heijer , T. , Mazoyer , B. , Coker , L. H. , Enzinger , C. , Danoy , P. , Amin , N. , Arfanakis , K. , van Buchem , M. A. , de Bruijn , R. F. , Beiser , A. , Dufouil , C. , Huang , J. , Cavalieri , M. , Thomson , R. , Niessen , W. J. , Chibnik , L. B. , Gislason , G. K. , Hofman , A. , Pikula , A. , Amouyel , P. , Freeman , K. B. , Phan , T. G. , Oostra , B. A. , Stein , J. L. , Medland , S. E. , Vasquez , A. A. , Hibar , D. P. , Wright , M. J. , Franke , B. , Martin , N. G. , Thompson , P. M. , Nalls , M. A. , Uitterlinden , A. G. , Au , R. , Elbaz , A. , Beare , R. J. , van Swieten , J. C. , Lopez , O. L. , Harris , T. B. , Chouraki , V. , Breteler , M. M. , De Jager , P. L. , Becker , J. T. , Vernooij , M. W. , Knopman , D. , Fazekas , F. , Wolf , P. A. , van der Lugt , A. , Gudnason , V. , Longstreth , W. T., Jr , Brown , M. A. , Bennett , D. A. , van Duijn , C. M. , Mosley , T. H. , Schmidt , R. , Tzourio , C. , Launer , L. J. , Ikram , M. A. , Seshadri , S. and Cohorts for Heart and Aging Research in Genomic Epidemiology Consortium. 2012 . Common Variants at 12q14 and 12q24 are Associated With Hippocampal Volume . Nature Genetics , 44 : 545 – 551 . Enhancing Neuro Imaging Genetics through Meta-Analysis Consortium
  • Blanchard , G. and Roquain , E. 2009 . Adaptive False Discovery Rate Control Under Independence and Dependence . Journal of Machine Learning Research , 10 : 2837 – 2871 .
  • Hedges , L. and Olkin , I. 1985 . Statistical Methods for Meta-Analysis , London : Academic Press .
  • Kraft , P. , Zeggini , E. and Ioannidis , J. 2009 . Replication in Genome-Wide Association Studies . Statistical Science , 24 : 561 – 573 .
  • Lander , E. and Kruglyak , L. 1995 . Genetic Dissection of Complex Traits: Guidelines for Interpreting and Reporting Linkage Results . Nature Genetics , 11 : 241 – 247 .
  • Loughin , T. 2004 . A Systematic Comparison of Methods for Combining p-Values From Independent Tests . Computational Statistics and Data Analysis , 47 : 467 – 485 .
  • Reiner , A. , Yekutieli , D. and Benjamini , Y. 2003 . Identifying Differentially Expressed Genes Using False Discovery Rate Controlling Procedures . Bioinformatics , 19 : 368 – 375 .
  • Rosenbaum , P. 2001 . Replicating Effects and Biases . The American Statistician , 55 : 223 – 227 .
  • Simes , R. 1986 . An Improved Bonferroni Procedure for Multiple Tests of Significance . Biometrika , 73 : 751 – 754 .
  • Skol , A. , Scott , L. , Abecasis , G. and Boehnke , M. 2006 . Joint Analysis is More Efficient Than Replication-Based Analysis for Two-Stage Genome-Wide Association Studies . Nature Genetics , 38 : 209 – 213 .
  • Storey , J. , Taylor , J. and Siegmund , D. 2004 . Strong Control, Conservative Point Estimation, and Simultaneous Conservative Consistency of False Discovery Rates: A Unified Approach . Journal of the Royal Statistical Society, Series B , 66 : 187 – 205 .
  • Storey , J. and Tibshirani , R. 2003 . Statistical Significance for Genomewide Studies . Proceedings of the National Academy of Sciences , 100 : 9440 – 9445 .
  • Su , Z. , Marchini , J. and Donnelly , P. 2011 . Hapgen2: Simulation of Multiple Disease Snps . Bioinformatics , 27 : 2304 – 2305 .
  • The International HapMap Consortium . 2003 . The International Hapmap Project . Nature , 426 : 789 – 796 .
  • Yekutieli , D. 2008 . Comments on “Control of the False Discovery Rate Under Dependence Using the Bootstrap and Subsampling . Test , 17 : 458 – 460 .
  • Zeggini , E. , Weedon , M. , Lindgren , C. , Frayling , T. , Elliott , K. , Lango , H. , Timpson , N. , Perry , J. and Rayner , N. 2007 . Replication of Genome-Wide Association Signals in Uk Samples Reveals Risk Loci for Type 2 Diabetes . Science , 316 : 1336 – 1341 .

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