The overlooked underground diversity: physical and chemical edaphic structure predict morphological variation in South American amphisbaenians (Squamata: Amphisbaenidae)

References

• Abe AS, Johansen K. 1987. gas exchange and ventilatory responses to hypoxia and hypercapnia in Amphisbaena alba (Reptilia: Amphisbaenia). J Exp Biol. 127(1):159–172.
   Google Scholar
• Albert EM, Zardoya R, García-París M. 2007. Phylogeographical and speciation patterns in subterranean worm lizards of the genus Blanus (Amphisbaenia: Blanidae). Mol Ecol. 16(7):1519–1531.
   PubMed Web of Science ®Google Scholar
• Almeida JPFA, Thomé MTC, Sturaro MJ, Pereira RJ, Mott T. 2020. The relative role of glacial refugia and longstanding barriers in the diversification of a fossorial squamate. Syst Biodivers. 18(5):447–463.
   Web of Science ®Google Scholar
• Barton K 2020. MuMIn: multi-model inference. R package version 1.47.1. [cited 2022 Jun 10]. Available from: https://CRAN.R-project.org/package=MuMIn
   Google Scholar
• Berthold AA. 1859. Einige neue Reptilien des akad. zoolog. Museums in Göttingen. Nachr Georg-August-Univ Königl Ges Wiss Göttingen. 17:179–181.
   Google Scholar
• Brandley MC, Huelsenbeck JP, Wiens JJ. 2008. Rates and patterns in the evolution of snake-like body form in squamate reptiles: evidence for repeated re-evolution of lost digits and long-term persistence of intermediate body forms. Evol. 62(8):2042–2064.
   PubMed Web of Science ®Google Scholar
• Cifuentes-Croquevielle C, Stanton DE, Armesto JJ. 2020. Soil invertebrate diversity loss and functional changes in temperate forest soils replaced by exotic pine plantations. Sci Rep. 10(1):7762.
   PubMed Web of Science ®Google Scholar
• Civantos E, Martín J, López P. 2003. Fossorial life constrains microhabitat selection of the amphisbaenian Trogonophis wiegmanni. Can J Zool. 81(11):1839–1844.
   Web of Science ®Google Scholar
• Dal Vechio F, Teixeira M, Mott T, Rodrigues MT. 2018. Rediscovery of the poorly known Amphisbaena bahiana Vanzolini, 1964 (Squamata, Amphisbaenidae), with data on its phylogenetic placement, external morphology and natural history. S Am J Herpetol. 13(3):238–248.
   Web of Science ®Google Scholar
• Dorgan K. 2015. The biomechanics of burrowing and boring. J Exp Biol. 218(2):176–183.
   PubMed Web of Science ®Google Scholar
• Dray S, Dufour A. 2007. The ade4 package: implementing the duality diagram for ecologists. J Stat Softw. 22(4):1–20.
   Web of Science ®Google Scholar
• Evon P, Labonne L, Padoan E, Vaca-Garcia C, Montoneri E, Boero V, Negre M. 2021. A new composite biomaterial made from sunflower proteins, urea, and soluble polymers obtained from industrial and municipal biowastes to perform as slow release fertilizer. Coatings. 11(1):43.
   Web of Science ®Google Scholar
• Fitzpatrick MC, Mokany K, Manion G, Lisk M, Ferrier S, Nieto-Lugilde D 2021. Gdm: generalized dissimilarity modeling. R package version 1.4.2.2. [cited 2022 Jun 10]. Available from: https://CRAN.R-project.org/package=gdm
   Google Scholar
• Fox J, Weisberg S 2019. An {R} companion to applied regression. [cited 2022 Jun 10]. Available from: https://socialsciences.mcmaster.ca/jfox/Books/Companion
   Google Scholar
• Fraga R, Ferrão M, Stow AJ, Magnusson WE, Lima AP. 2018. Different environmental gradients affect different measures of snake β-diversity in the Amazon rainforests. PeerJ. 6:e5628.
   PubMed Web of Science ®Google Scholar
• Fraga R, Lima AP, Magnusson WE. 2011. Mesoscale spatial ecology in a tropical snake assemblage: the width of riparian corridors in central Amazon. Herpetol J. 21:51–57.
   Web of Science ®Google Scholar
• Gans C. 1968. Relative success of divergent pathways in amphisbaenian specialization. Am Nat. 102(926):345–362.
   Web of Science ®Google Scholar
• Gans C. 1969. Amphisbaenians, reptiles specialized for a burrowing existence. Endeavour. 28:146–151.
   Web of Science ®Google Scholar
• Gans C. 1978. The characteristics and affinities of the Amphisbaenia. Trans Zool Soc London. 34(4):347–416.
   Google Scholar
• Gans C, Montero R. 2008. An atlas of amphisbaenian skull anatomy. In: Gans C, Gaunt AS, Adler K, editors. Biology of reptilia: morphology and appendicular locomotor apparatus of Lepidosauria. London: Society for the Study of Amphibians and Reptiles. p. 621–732.
   Google Scholar
• Giradoux P 2021. Pgirmess: spatial analysis and data mining for field ecologists. R package version 1.7.0. [cited 2022 Jun 10]. Available from: https://CRAN.R-project.org/package=pgirmess
   Google Scholar
• Greenville AC, Dickman CR. 2009. Factors affecting habitat selection in s specialist fossorial skink. Biol J Linn Soc. 97(3):531–544.
   Web of Science ®Google Scholar
• Hampton PM, Moon BR. 2012. Gape size, its morphological basis, and the validity of gape indices in western diamond-back rattlesnakes (Crotalus atrox). J Morphol. 274(2):194–202.
   PubMed Web of Science ®Google Scholar
• Heneghan L, Coleman DC, Zou X, Crossley DA, Haines BL. 1999. Soil microarthropod contributions to decomposition dynamics: tropical-temperate comparisons of a single substrate. Ecol. 80(6):1873–1882.
   Google Scholar
• Hohl LSL, Loguercio MFC, Beundía RA, Almeida-Santos M, Viana LA, Barros-Filho JD, Rocha-Barbosa O. 2014. Fossorial gait patterns and performance of a shovel-headed amphisbaenian. J Zool. 294(4):234–240.
   Web of Science ®Google Scholar
• Hohl LSL, Loguercio MFC, Sicuro FL, Barros-Filho JD, Rocha-Barbosa O. 2017. Body and skull morphometric variations between two shovel-headed species of Amphisbaenia (Reptilia: Squamata) with morphofunctional inferences on burrowing. PeerJ. 5:e3581.
   PubMed Web of Science ®Google Scholar
• Jelinek AR, Chemale-Jr F, van der Beek PA, Guadagnin F, Cupertino JA. 2014. Denudation history and landscape evolution of the northern east-Brazilian continental margin from apatite fission-track thermochronology. J S Am Earth Sci. 54:158–181.
   Web of Science ®Google Scholar
• Johansen K, Abe AS, Weber RE. 1980. Respiratory properties of whole blood and hemoglobin from the burrowing reptile, Amphisbaena alba. J Exp Zool. 214(1):71–77.
   PubMedGoogle Scholar
• Jombart T. 2008. adegenet: a R package for the multivariate analysis of genetic markers. Bioinfor. 24(11):1403–1405.
   Web of Science ®Google Scholar
• Jombart T, Devillard S, Balloux F. 2010. Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genomics. 11:94.
   PubMed Web of Science ®Google Scholar
• Kawecki TJ, Ebert D. 2004. Conceptual issues in local adaptation. Ecol Lett. 7(12):1225–1241.
   Web of Science ®Google Scholar
• Kearney M. 2003. Systematics of the Amphisbaenia (Lepidosauria: Squamata) based on morphological evidence from recent and fossil forms. Herpetol Monogr. 17(1):1–74.
   Web of Science ®Google Scholar
• Khalid Al-Sadoon M, Ahmad Paray B, Rudayni HA. 2016. Diet of the worm lizard, Diplometopon zarudnyi (Nikolsky, 1907), in Riyadh province, Saudi Arabia (Reptilia: Trogonophidae). Zool Middle East. 62(3):227–230.
   Web of Science ®Google Scholar
• Laland KN, Uller T, Feldman MW, Sterelny K, Müller GB, Moczek A, Jablonka E, Odling-Smee J. 2015. The extended evolutionary synthesis: its structure, assumptions and predictions. Proc Royal Soc B-Biol Sci. 282(1813):20151019.
   PubMed Web of Science ®Google Scholar
• Lavelle P, Bignell D, Lepage M, Wolters V, Roger P, Ineson P, Heal OW, Dhillion S. 1997. Soil function in a changing world: the role of invertebrate ecosystem engineers. Eur J Soil Biol. 33(4):159–193.
   Web of Science ®Google Scholar
• Lleonart J, Salat J, Torres GL. 2000. Removing allometric effects of body size in morphological analysis. J Theor Biol. 205(1):85–93.
   PubMed Web of Science ®Google Scholar
• Longrich NR, Vinther J, Pyron RA, Pisani D, Gauthier JA. 2015. Biogeography of worm lizards (Amphisbaenia) driven by end-cretaceous mass extinction. Proc Royal Soc B-Biol Sci. 282(1813):1–10.
   Google Scholar
• Luna F, Antinuchi CD. 2006. Cost of foraging in the subterranean rodent Ctenomys talarum: effect of soil hardness. Can J Zool. 84(5):661–667.
   Web of Science ®Google Scholar
• Maia SMF, Xavier FAS, Oliveira TS, Mendonça ES, Araújo-Filho JA. 2008. Frações de nitrogênio em luvissolo sob sistemas agroflorestais e convencional no semiárido cearense. Rev Bras Cienc Solo. 32(1):381–392.
   Web of Science ®Google Scholar
• Martín J, López P, Gutiérrez E, García LV. 2015. Natural and anthropogenic alterations of the soil affect body condition of the fossorial amphisbaenian Trogonophis wiegamnni in North Africa. J Arid Environ. 122:30–36.
   Web of Science ®Google Scholar
• Martín J, López P, Salvador A. 1991. Microhabitat selection of the amphisbaenian Blanus cinereus. Copeia. 1991(4):1142–1146.
   Web of Science ®Google Scholar
• Martín J, Ortega J, López P, Pérez-Cembranos A, Pérez-Mellado V. 2013. Fossorial life does not constrain diet selection in the amphisbaenian Trogonophis wiegmanni. J Zool. 291(3):226–233.
   Web of Science ®Google Scholar
• Maschio GF, Prudente ALC, Mott T. 2009. Water dispersal of Amphisbaena amazonica (Squamata: Amphisbaenidae) in Brazilian Amazonia. Zool. 26(3):567–570.
   Google Scholar
• McNab BK. 1966. The metabolism of fossorial rodents: a study of convergence. Ecol. 47(5):712–733.
   Web of Science ®Google Scholar
• Mehta RS, Ward AB, Alfaro ME, Wainwright PC. 2010. Elongation of the body in eels. Integr Comp Biol. 50(6):1091–1105.
   PubMed Web of Science ®Google Scholar
• Morinaga G, Bergmann PJ. 2020. Evolution of fossorial locomotion in the transition from tetrapod to snake-like lizards. Proc Royal Soc B-Biol. 287(1923):1–6.
   Web of Science ®Google Scholar
• Mott T 2006. Molecular systematics of Brazilian amphisbaenids [PhD thesis]. [San Diego (CA)]: University of California.
   Google Scholar
• Mott T, Vieites DR. 2009. Molecular phylogenetics reveals extreme morphological homoplasy in Brazilian worm lizards challenging current taxonomy. Mol Phylogenet Evol. 51(2):190–200.
   PubMed Web of Science ®Google Scholar
• Mulvaney A, Castoe TA, Ashton KG, Krysko KL, Parkinson CL. 2005. Evidence of population genetic structure within the Florida worm lizard, Rhineura floridana (Amphisbaenia: Rhineuridae). J Herpetol. 39(1):118–124.
   Web of Science ®Google Scholar
• Navas CA, Antoniazzi MM, Carvalho JE, Chaui-Berlink JG, James RS, Jared C, Kohlsdorf T, Pai-Silva MD, Wilson RS. 2004. Morphological and physiological specialization for digging in amphisbaenians, an ancient lineage of fossorial vertebrates. J Exp Biol. 207(14):2433–2441.
   PubMed Web of Science ®Google Scholar
• Nawaz MF, Bourrié G, Trolard F. 2013. Soil compaction impact and modelling. A review. Agron Sustain Dev. 33(2):291–309.
   Web of Science ®Google Scholar
• Oksanen J, Blanchet FG, Friendly M, Kindt R, Legendre P, McGlinn D, Minchin P, O´Hara RB, Simpson GL, Solymos P, et al. 2020. Vegan: community ecology package. R package version 2.5-7. [cited 2022 Jun 10]. Available from: https://CRAN.R-project.org/package=vegan
   Google Scholar
• Olson DM, Dinerstein E, Wikramanayake ED, Burgess ND, Powell GVN, Underwood EC, D´amico JA, Itoua I, Strand HE, Morrison JC, et al. 2001. Terrestrial ecoregions of the world: a new map of life on Earth: a new global map of terrestrial ecoregions provides an innovative tool for conserving biodiversity. BioScience. 51(11):933–938.
   Web of Science ®Google Scholar
• Perez R, Borges-Martins M. 2019. Integrative taxonomy of small worm lizards from Southern South America, with description of three new species (Amphisbaenia: Amphisbaenidae). Zool Anz. 283:124–141.
   Web of Science ®Google Scholar
• Poggio L, de Sousa LM, Batjes NH, Heuvelink GBM, Kempen B, Ribeiro E, Rossiter D. 2021. SoilGrids 2.0: producing soil information fot the globe with quantified spatial uncertainty. Soil. 7(1):217–240.
   Web of Science ®Google Scholar
• Ribeiro S, Gomes JO, Silva HLR, Cintra CED, Silva-Jr NJ. 2016. A new two-pored species of Amphisbaena (Squamata, Amphisbaenidae) from the Brazilian Cerrado, with a key to the two-pored species of Amphisbaena. Zootaxa. 4147(2):124–142.
   PubMed Web of Science ®Google Scholar
• Ribeiro LB, Gomides S, Costa HC. 2018. A New Species of Amphisbaena from Northeastern Brazil (Squamata: Amphisbaenidae). J Herpetol. 52(2):234–241.
   Web of Science ®Google Scholar
• Ribeiro LB, Gomides SC, Costa HC. 2020. A new worm lizard species (Squamata: Amphisbaenidae: Amphisbaena) with non-autotomic tail, from Northeastern Brazil. J Herpetol. 54(1):9–18.
   Web of Science ®Google Scholar
• Ribeiro S, Santos-Jr AP, Zaher H. 2015. A new species of Leposternon Wagler, 1824 (Squamata, Amphisbaenia) from northeastern Argentina. Zootaxa. 4034(2):309–324.
   PubMed Web of Science ®Google Scholar
• Ribeiro S, Sá V, Santos-Jr AP, Graboski R, Zaher H, Guedes AG, Andrade SP, Vaz-Silva W. 2019. A new species of the Amphisbaena (Squamata, Amphisbaenidae) from the Brazilian Cerrado with a key for the two-pored species. Zootaxa. 4550(3):301–320.
   PubMed Web of Science ®Google Scholar
• Seebacher F, Webster MM, James RS, Tallis J, Ward AJW. 2016. Morphological differences between habitats are associated with physiological and behavioural trade-offs in stickback (Gasterosteus aculeatus). R Soc Open Sci. 3(6):160316.
   PubMed Web of Science ®Google Scholar
• Tavares AP, Carvalho JJS, Ribeiro LB. 2017. First record of (Squamata, Amphisbaenidae) in the state of Pernambuco, Brazil: including a distribution map and soil classification of its occurrence. Herpetol Notes. 10:19–22.
   Google Scholar
• Vanzolini PE. 1991. Two further new species of Amphisbaena from the semi-arid northeast of Brasil (Reptilia, Amphisbaenia). Pap Avulsos Zool. 37:347–361.
   Google Scholar
• Venables WN, Ripley BD. 2002. Modern applied statistics with S. New York (NY): Springer. p. 292–299.
   Google Scholar
• Vidal N, Azvolinsky A, Cruaud C, Hedges SB. 2008. Origin of tropical American burrowing reptiles by transatlantic rafting. Biol Lett. 4(1):115–118.
   PubMed Web of Science ®Google Scholar
• Webb JK, Shine R, Branch WR, Harlow PS. 2000. Life underground: food habits and reproductive biology of two amphisbaenian species from South Africa. J Herpetol. 34(4):510–516.
   Web of Science ®Google Scholar
• Weber RE, Johansen K, Abe AS. 1981. Myoglobin from the burrowing reptile Amphisbaena alba. Concentrations and Functional Characteristics. Comp Biochem Physiol Part A Physiol. 68(2):159–165.
   Web of Science ®Google Scholar
• Werneck FP. 2011. The diversification of eastern South American open vegetation biomes: historical biogeography and perspectives. Quat Sci Rev. 30(13):1630–1648.
   Web of Science ®Google Scholar
• Werneck FP, Gamble T, Colli GR, Rodrigues MT, Sites-Jr JW. 2012. Deep diversification ang long-term persistence in the South American “dry diagonal”: integrating continent-wide phylogeography and distribution modeling of geckos. Evol. 66(10):3014–3034.
   PubMed Web of Science ®Google Scholar
• Whitehead A, Crawford DL. 2006. Variation within and among species in gene expression: raw material for evolution. Mol Ecol. 15(5):1197–1211.
   PubMed Web of Science ®Google Scholar
• Wiens JJ, Brandley MC, Reeder TW. 2006. Why does a trait evolve multiple times within a clade? Repeated evolution of snakelike body form in Squamate reptiles. Evol. 60(1):123–141.
   PubMed Web of Science ®Google Scholar
• Wright S. 1943. Isolation by distance. Genetics. 28(2):114–138.
   PubMedGoogle Scholar
• Zamudio KR, Bell RC, Mason NA. 2016. Phenotypes in phylogeography: species traits, environmental variation, and vertebrate diversification. Pnas. 113(29):8041–8048.
   PubMed Web of Science ®Google Scholar