Micronutrient enrichment mediated by plant-microbe interactions and rice cultivation practices

References

• Barnett, J. P., A. Millard, A. Z. Ksibe, D. J. Scanlan, R. Schmid, and C. A. Blindaue. 2012. Mining genomes of marine cyanobacteria for elements of zinc homeostasis. Frontiers in Microbiology 3: 142–147.
   PubMed Web of Science ®Google Scholar
• Biswas, J. C., J. K. Ladha, and F. B. Dazzo. 2000. Rhizobia inoculation improves nutrient uptake and growth of lowland rice. Soil Science Society of America Journal 64: 1644–1650.
   Web of Science ®Google Scholar
• Borg, S., H. Brinch-Pedersen, B. Tauris, and P. B. Holm. 2009. Iron transport, deposition and bioavailability in the wheat and barley grain. Plant and Soil 325: 15–24.
   Web of Science ®Google Scholar
• Cakmak, I. 2008. Enrichment of cereal grains with zinc: Agronomic or genetic biofortification? Plant and Soil 302: 1–17.
   Web of Science ®Google Scholar
• Cakmak, I., W. H. Pfeiffer, and B. McClafferty. 2010. Biofortification of durum wheat with zinc and iron. Cereal Chemistry 87: 10–20.
   Web of Science ®Google Scholar
• Cavet, J. S., A. I. Graham, W. Meng, and N. J. Robinson. 2003. A cadmium-lead-sensing ArsR-SmtB repressor with novel sensory sites. Complementary metal discrimination by NmtR and CmtR in a common cytosol. Journal of Biological Chemistry 278: 44560–44566.
   PubMed Web of Science ®Google Scholar
• Chen, L. M., C. C. Lin, and C. H. Kao. 2000. Copper toxicity in rice seedlings: Changes in antioxidative enzyme activities, H2O2 level, and cell wall peroxidise activity in roots. Botanical Bulletin of Academia Sinica 41: 99–103.
   Google Scholar
• Chithrashree, A. C., S. Udayashankar, C. Nayaka, M. S. Reddy and C. Srinivas. 2011. Plant growth-promoting rhizobacteria mediate induced systemic resistance in rice against bacterial leaf blight caused by Xanthomonas oryzae pv. oryzae. Biological Control 59: 114–122.
   Web of Science ®Google Scholar
• Compant, S., B. Duffy, J. Nowak, C. Clément, and E. A. Barka. 2005. Use of plant growth promoting bacteria for bio-control of plant diseases: Principles, mechanisms of action, and future prospects. Applied and Environmental Microbiology 71: 4951–4959.
   PubMed Web of Science ®Google Scholar
• Copenhagen Consensus Conference. 2008. Available at: http://www.copenhagenconsensus.com.
   Google Scholar
• Dakora, F. D., and D. A. Phillips. 2002. Root exudates as mediators of mineral acquisition in low-nutrient environments. Plant and Soil 245: 35–47.
   Web of Science ®Google Scholar
• De Santiago, A., J. M. Quintero, M. Avilés, and A. Delgado. 2011. Effect of Trichoderma asperellum strain T34 and glucose addition on iron, copper, manganese, and zinc uptake by wheat grown on calcareous medium. Plant and Soil 342: 97–104.
   Web of Science ®Google Scholar
• Fageria, N. K., and A. B. dos Santos. 2013. Lowland rice growth and development and nutrient uptake during growth cycle. Journal of Plant Nutrition 36: 1841–1852.
   Web of Science ®Google Scholar
• Frossard, E., M. Bucher, F. Machler, A. Mozafar, and R. Hurrell. 2000. Potential for increasing the content and bioavailability of Fe, Zn and Ca in plants of human nutrition. Journal of the Science of Food and Agriculture 80: 861–879.
   Web of Science ®Google Scholar
• Gaind, S., and L. Nain. 2010. Exploration of composted cereal waste and poultry manure for soil restoration. Bioresource Technology 101: 2996–3003.
   PubMed Web of Science ®Google Scholar
• Galera, S. G., E. Rojas, D. Sudhakar, C. Zhu, A. M. Pelacho, T. Capell, and P. Christou. 2010. Critical evaluation of strategies for mineral fortification of staple food crops. Transgenic Research 19: 165–180.
   PubMed Web of Science ®Google Scholar
• Gayen, D., S. N. Sarkar, S. K. Datta, and K. Datta. 2013. Comparative analysis of nutritional compositions of transgenic high iron rice with its non-transgenic counterpart. Food Chemistry 138: 835–840.
   PubMed Web of Science ®Google Scholar
• Glover, D. 2011. Science, practice and the system of rice intensification in Indian agriculture. Food Policy 36: 749–755.
   Web of Science ®Google Scholar
• Goh, C.-H, V. D. F. Vallejos, A. B. Nicotra, and U. Mathesius. 2013. The impact of beneficial plant-associated microbes on plant phenotypic plasticity. Journal of Chemical Ecology 39: 826–839.
   PubMed Web of Science ®Google Scholar
• Hammond, J. P., H. C. Bowen, P. J. White, V. Mills, K. A. Pyke, A. J. M. Baker, S. N. Whiting, S. T. May, and M. R. Broadley. 2006. A comparison of the Thlaspi caerulescens and T. arvenseshoot transcriptomes. The New Phytologist 170: 239–260.
   Google Scholar
• Harman, G. E., C. R. Howell, A. Viterbo, I. Chet, and M. Lorito. 2004. Trichoderma species opportunistic, a virulent plant symbionts. Nature Reviews Microbiology 2: 43–56.
   PubMed Web of Science ®Google Scholar
• Howell, C. R. 2003. Mechanisms employed by Trichoderma species in the biological control of plant diseases: The history and evolution of current concepts. Plant Disease 87: 4–10.
   PubMed Web of Science ®Google Scholar
• Jiang, W., P. C. Struik, H. van Keulen, M. Zhao, L. N. Jin, and T. J. Stomph. 2008. Does increased zinc uptake enhance grain zinc mass concentration in rice? Annals of Applied Biology 153: 135–147.
   Web of Science ®Google Scholar
• Khan, A. G. 2005. Role of soil microbes in the rhizospheres of plants growing on trace metal contaminated soils in phytoremediation. Journal of Trace Elements in Medicine and Biology 18: 355–364
   PubMed Web of Science ®Google Scholar
• Liu, A., C. Hamel, R. I. Hamilton, B. L. Ma, and D. L. Smith. 2000. Acquisition of Cu, Zn, Mn, and Fe by mycorrhizal maize (Zea mays L.) grown in soil at different P and micronutrient levels. Mycorrhiza 9: 331–336
   Web of Science ®Google Scholar
• Mandal, B., P. L. G. Vlek, and L. N. Mandal. 1999. Beneficial effect of blue green algae and Azolla excluding supplying nitrogen on wetland rice fields: A review. Biology and Fertility of Soils 28: 329–342.
   Web of Science ®Google Scholar
• Manjunath, M., R. Prasanna, P. Sharma, L. Nain, and R. Singh. 2011. Developing PGPR consortia using novel genera – Providencia and Alcaligenes along with cyanobacteria for wheat. Archives of Agronomy and Soil Science 57: 873–887.
   Web of Science ®Google Scholar
• Mishra, A., and V. M. Salokhe. 2008. Seedling characteristics and early growth of transplanted rice under different water regimes. Experimental Agriculture 44: 1–19.
   Web of Science ®Google Scholar
• Nain, L., A. Rana, M. Joshi, D. J. Shrikrishna, D. Kumar, Y. S. Shivay, S. Paul, and R. Prasanna. 2010. Evaluation of synergistic effects of bacterial and cyanobacterial strains as biofertilizers for wheat. Plant and Soil 331: 217–230.
   Web of Science ®Google Scholar
• Nayak, S., R. Prasanna, T. K. Dominic, and P. K. Singh. 2001. Floristic abundance and relative distribution of different cyanobacterial genera in rice field soil at different crop growth stages. Phykos 40: 15–22.
   Google Scholar
• Ohtakara, A. 1988. Chitosanase from Streptomyces griseus. Methods in Enzymology 161: 64–69.
   Web of Science ®Google Scholar
• Olsen, S. R., and C. V. Cole, F. S. Watanabe, and L. Dean. 1954. Estimation of available phosphorus in soil by extraction with sodium carbonate. USDA Circular 939. Washington, DC: USDA.
   Google Scholar
• Pfeiffer, W. H., and B. McClafferty. 2007. HarvestPlus: Breeding crops for better nutrition. Crop Science 47: 88–105.
   Web of Science ®Google Scholar
• Prasad, A. S. 1984. Discovery and importance of zinc in human nutrition. Federation Proceedings. Federation of American Societies for Experimental Biology 43: 2829–2834.
   Google Scholar
• Prasad, M. N. V., and K. Strzalka. 2002. Physiology and Biochemistry of Metal Toxicity and Tolerance in Plants. Dordrecht, the Netherlands: Kluwer Academic Publishers.
   Google Scholar
• Prasad, R., Y. S. Shivay, D. Kumar, and S. N. Sharma. 2006. Learning by Doing Exercise in Soil Fertility–A Practical Manual for Soil Fertility. New Delhi: Division of Agronomy, IARI.
   Google Scholar
• Prasanna, R., S. Pattnayak, T. C. K. Sugitha, L. Nain, and A. K. Saxena. 2011. Development of cyanobacterium based biofilms and their in vitro evaluation for agriculturally useful traits. Folia Microbiologica 56: 49–58
   PubMed Web of Science ®Google Scholar
• Prasanna, R., M. Joshi, A. Rana, Y. S. Shivay, and L. Nain. 2012. Influence of co-inoculation of bacteria- cyanobacteria on crop yield and C- N sequestration in soil under rice crop. World Journal of Microbiology and Biotechnology 28: 1223–1235.
   PubMed Web of Science ®Google Scholar
• Prasanna, R., P. Jaiswal, S. Nayak, A. Sood, and B. D. Kaushik. 2009. Cyanobacterial diversity in the rhizosphere of rice and its ecological significance. Indian Journal of Microbiology 49: 8–97.
   Web of Science ®Google Scholar
• Prasanna, R., S. Triveni, N. Bidyarani, S. Babu, K. Yadav, A. Adak, S. Khetarpal, M. Pal, Y. S. Shivay, and A. K. Saxena. 2014. Evaluating the efficacy of cyanobacterial formulations and biofilmed inoculants for leguminous crops. Archives of Agronomy and Soil Science 60: 349–366.
   Web of Science ®Google Scholar
• Prasanna, R., V. Chaudhary, V. Gupta, S. Babu, A. Kumar, Y. S. Shivay, and L. Nain. 2013. Cyanobacteria mediated plant growth promotion and bioprotection against Fusarium wilt in tomato. European Journal of Plant Pathology 136: 337–353.
   Web of Science ®Google Scholar
• Ramesh, S. A., R. Shin, and D. P. Schachtman. 2003. Differential metal selectivity and gene expression of two zinc transporters from rice. Plant Physiology 133: 126–134.
   PubMed Web of Science ®Google Scholar
• Rana, A., M. Joshi, R. Prasanna, Y. S. Shivay, and L. Nain. 2012a. Biofortification of wheat through inoculation of plant growth promoting rhizobacteria and cyanobacterial. European Journal of Soil Biology 50: 118–126.
   Web of Science ®Google Scholar
• Rana, A., B. Saharan, L. Nain, R. Prasanna, and Y. S. Shivay. 2012 b. Enhancing micronutrient uptake and yield of wheat through bacterial PGPR consortia. Soil Science and Plant Nutrition 58: 573–582.
   Web of Science ®Google Scholar
• Rao, D. L. N., and R. G. Burns. 1990. The effect of surface growth of blue green algae and bryophytes on some microbiological, biochemical and physical soil properties. Biology and Fertility of Soils 9: 239–244.
   Web of Science ®Google Scholar
• Rashmi, V., M. Shylajanaciyar, R. Rajalakshmi, S.F. D'Souza, D. Prabaharan and L. Uma. 2013. Siderophore mediated uranium sequestration by marine cyanobacterium Synechococcus elongatus BDU 130911. Bioresource Technology 130: 204–210.
   PubMed Web of Science ®Google Scholar
• Rengel, Z., G. D. Batten, and D. E. Crowley. 1999. Agronomic approaches for improving the micronutrient density in edible portions of field crops. Field Crops Research 60: 27–40.
   Web of Science ®Google Scholar
• Ross, W. W., and R. R. Sederoff. 1992. Phenylalanine ammonia lyase from loblolly pine: Purification of the enzyme and isolation of complementary DNA clone. Plant Physiology 98: 380–386.
   PubMed Web of Science ®Google Scholar
• Ryu, C. M., C. H. Hu, R. D. Locy, and J. W. Kloepper. 2005. Study of mechanisms for plant growth promotion elicited by rhizobacteria in Arabidopsis thaliana. Plant and Soil 268: 285–292.
   Web of Science ®Google Scholar
• Sato, S., and N. Uphoff. 2007. A review of on–farm evaluation of system of rice intensification (SRI) methods in eastern Indonesia. CAB Reviews: Perspectives in agriculture, veterinary science, nutrition and natural resources, 2. Wallingford, UK: Commonwealth Agricultural Bureau International.
   Google Scholar
• Seneviratne, G., and S. A. Kulasooriya. 2013. Reinstating soil microbial diversity in agroecosystems: The need of the hour for sustainability and health. Agriculture, Ecosystems and Environment 164: 181–182.
   Web of Science ®Google Scholar
• Seneviratne, G., M. L. M. A. W. Weerasekara, K. A. C. N. Seneviratne, J. S. Zavahir, M. L. Kecskes, and I. R. Kennedy. 2011. Importance of biofilm formation in plant growth promoting rhizobacterial action. Plant Growth and Health Promoting Bacteria 18: 81–95.
   Google Scholar
• Sharma, A., B. N. Johria, A. K. Sharma, and B. R. Glick. 2003. Plant growth-promoting bacterium Pseudomonas sp. strain GRP3 influences iron acquisition in mung bean (Vigna radiata L. Wilzeck). Soil Biology and Biochemistry 35: 887–894.
   Web of Science ®Google Scholar
• Sinha, S. K., and J. Talati. 2007. Productivity impacts of the system of rice intensification (SRI): A case study in West Bengal, India. Agricultural Water Management 87: 55–60.
   Web of Science ®Google Scholar
• Stoop, W., N. Uphoff, and A. Kassam. 2002. A review of agricultural research issues raised by the system of rice intensification (SRI) from Madagascar: Opportunities for improving farming systems for resource-poor farmers. Agricultural Systems 71: 249–274.
   Web of Science ®Google Scholar
• Subbiah, B. V., and G. L. Asija. 1956. A rapid procedure for assessment of available nitrogen in rice soils. Current Science 25: 259–260.
   Google Scholar
• Sukalovic, V. H. T., M. S. Vuletić, J. Veljovic, and Z. Vucinic. 2010. The effects of manganese and copper in vitro and in vivo on peroxidase catalytic cycles. Journal of Plant Physiology 167: 1550–1557.
   PubMed Web of Science ®Google Scholar
• Swarnalakshmi, K., R. Prasanna, A. Kumar, S. Pattnaik, K. Chakravarty, Y. S. Shivay, R. Singh, and A. K. Saxena. 2013. Evaluating the influence of novel cyanobacterial biofilmed biofertilizers on soil fertility and plant nutrition in wheat. European Journal of Soil Biology 55: 105–116. Thakur, A. K., S. Rath, D. U. Patil, and A. Kumar. 2011. Effect of rice plant morphology of water and associated management practices of the system of rice intensification and their implications for crop performance. Paddy and Water Environment 9: 13–24.
   Web of Science ®Google Scholar
• Turner, J. S., and N. J. Robinson. 1995. Cyanobacterial metallothioneins: Biochemistry and molecular genetics. Journal of Industrial Microbiology 14: 119–125.
   PubMedGoogle Scholar
• Uphoff, N. 2002. Opportunities for raising yields by changing management practices: The system of rice intensification in Madagascar. In: Agroecological Innovations, ed. N. Uphoff, pp. 145–161. London: Earthscan. van de Mortel, J., L. A. Villanueva, H. Schat, J. Kwekkeboom, S. Coughlan, P. D. Moerland, T. Ever Loren van, M. Koornneef, and M. G. M. Aarts. 2006. Large expression differences in genes for iron and zinc homeostasis, stress response, and lignin biosynthesis distinguish roots of Arabidopsis thaliana and the related metal hyperaccumulator Thlaspi caerulescens. Plant Physiology 142: 1127–1147.
   Google Scholar
• Van Loon, L. C. 2007. Plant responses to plant growth-promoting rhizobacteria. European Journal of Plant Pathology 119: 243–254.
   Web of Science ®Google Scholar
• Verma, M., S. K. Brar, R. D. Tyagi, R. Y. Surampalli, and J. R. Valéro. 2007. Antagonistic fungi, Trichoderma spp.: Panoply of biological control. Biochemical Engineering Journal 37: 1–20.
   Web of Science ®Google Scholar
• Verma, S. K, and H. N. Singh. 1991. Evidence for energy-dependent copper efflux as a mechanism of Cu2+ resistance in the cyanobacterium Nostoc calcicola. FEMS Microbiology Letters 84: 291–294.
   Web of Science ®Google Scholar
• Von Braun, J., M. W. Rosegrant, R. Pandya-Lorch, M. J. Cohen, S. A. Cline, M. A. Brown, and M. S. Bos. 2005. New risks and opportunities for food security: Scenario analyses for 2015 and 2050. 2020 Discussion Paper 39. Washington, DC: International Food Policy Research Institute.
   Google Scholar
• Watanabe, A., and Y. Yamamoto. 1971. Algal nitrogen fixation in the tropics. Plant and Soil 35: 403–413.
   Google Scholar
• Waters, B. M., and R. P. Sankara. 2011. Moving micronutrients from the soil to the seeds: Genes and physiological processes from a biofortification perspective. Plant Science 180: 562–574.
   PubMed Web of Science ®Google Scholar
• Welch, R. M. and R. D. Graham. 2004. Breeding for micronutrients in staple food crops from a human nutrition perspective. Journal of Experimental Botany 55: 353–364.
   PubMed Web of Science ®Google Scholar
• Welch, R. M., and W. A. Norvell. 1993. Growth and nutrient uptake by barley (Hordeum vulgare L. cv Herta): Studies using an N-(2-Hydroxyethyl) ethylene dinitrilotriacetic acid-buffered nutrient solution technique (II. Role of zinc in the uptake and root leakage of mineral nutrients). Plant Physiology 101: 627–631.
   Google Scholar
• Yang, H. H., S. L. Yang, K. C. Peng, C. T. Lo, and S. Y. Liu. 2009. Induced proteome of Trichoderma harzianum by Botrytis cinerea. Mycological Research 113: 924–932.
   PubMed Web of Science ®Google Scholar
• Zhang, J., M. Wang, Y. Cao, L. Wu, and S. Xu, 2012. Iron and zinc accumulation trend in a japonica rice grains after anthesis. African Journal of Agricultural Research 7: 1312–1316.
   Google Scholar