- AlbertJ.H. and Chib.S. (1993) Bayesian Analysis of binary and polychotomous response data, Journal of the American Statistical Association., 88: 669–679.
- BaeK and MallickB. (2004) Gene selection using a two-level hierarchical Bayesian model, Bioinformatics., 20: 3423–3430.
- BezdekJ.C. (1981) Pattern Recognition with Fuzzy objective function algorithms. Plenum Press, New York.
- BrownP.J., VannucciM. and FearnT. (1998) Multivariate Bayesian variable selection and prediction. Journal of the Royal Statistical Society: Series B (Statistical Methodology)., 60: 627–641.
- BrownP.O. and BotsteinD. (1999) Exploring the new world of the genome with DNA microarrays. Nature Genetics., 21 (Suppl.): 33–37.
- ChenY., DoughertyE.R. and BittnerM.L. (1997) Ratio-based decisions and the quantitative analysis of cDNA microarray images. Journal of Biomedical Optics., 2: 364–374.
- ChoJ.H., LeeD.K., ParkJ.H., KimK.W. and LeeI.B. (2002) Optimal approaches for classification of acute leukemia subtypes based on gene expression data, Biotechnology Progress., 18,4:847–854.
- De RisiJ.L., IyerV.R., and BrownP.O. (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science., 278:680–686.
- DembeleD and KastnerP (2003) Fuzzy C-means method for clustering microarray data, Bioinformatics., Vol. 19, no. 8:973–980.
- DudoitS., YangY.H., CallowM.J. and SpeedT. (2000) Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Technical Report, Department of Statistics, University of California, Berkeley, USA.
- EisenM.B., SpellmanP.T., BrownP.O. and BotsteinD. (1998) Cluster analysis and display of genome-wide expression patterns. Proceedings of National Academy of Sciences, USA., 95: 14863–14868.
- GeorgeE. I., and McCulloch.R. E. (1997) Approaches for Bayesian variable selection. Statistica Sinica., 7: 339–374.
- GilksW., RichardsonS. and SpiegelhalterD. (1996) Markov Chain Monte Carlo in practice, Chapman and Hall, London.
- GolubT. R., SlonimD. K., TamayoP., HuardC., GaasenbeekM., MesirovJ. P., CollerH., LohM. L., DowningJ. R., CaligiuriM. A., BloomfieldC. D. & LanderE. S. (1999) Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science., 286: 531–537.
- HastieT., TibshiraniR., EisenM.B., AlizadehA., LevyR., StaudtL., ChanW.C., BotsteinD. and BrownP. (2000) Gene shaving as a method for identifying distinct sets of genes with similar expression patterns. Genome Biology., 1: Research0003.1-0003.21.
- KuoL. and MallickB. (1998). Variable Selection for Regression Models, Sankhya B, 60: 65–81.
- LanderE.S. (1999) Array of hope. Nature Genetics., 21(suppl.): 3–4.
- LeeK.E., ShaN., DoughertyE.R., VannucciM., and MallickB.K (2003) Gene selection : a Bayesian variable selection approach. Bioinformatics., 19(1):90–97.
- LipshutzR.J., FodorS.P., GingerasT.R. and LockhartD.J. (1999) High density synthetic oligonucleotide arrays. Nature Genetics., 21(Suppl.): 20–24.
- NewtonM.A., KendziorskiC.M., RichmondC.S., BlattnerF.R., TsuiK.W., (2001) On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data. Journal of Computational Biology 8: 37–52.
- RobertC. (1995) Simulation of truncated normal variables. Statistics and computing., 5:121–125.
- SpellmanP.T., SherlockG., ZhangM.Q., IyerV.R., AndersK., EisenM.B., BrownP.O., BotsteinD. and FutcherB. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Molecular Biology of the Cell., 9: 3273–3297.
- TadesseM., ShaN. and VannucciM. (2005) Bayesian variable selection in clustering high-dimensional data. Journal of the American Statistical Association., 100: 602–617.
- TamayoP., SlonimD., MesirovJ., ZhuiQ., KitareewaniS., DmitrovskyE., LanderE.S. and GolubT.R. (1999) Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation. Proceedings of National Academy of Sciences, USA,96: 2907–2912.
- TibshiraniR., HastieT., EisenM., RossD., BotsteinD. and BrownP. (1999) Clustering methods for the analysis of DNA microarray data. Technical Report, Department of Statistics, Stanford University.
- WestM., NevinJ.R., MarksJ.R., SpangR. and ZuzanH. (2000) Bayesian regression analysis in the Large p, small n paradigm with application in DNA microarray studies. Technical Report, Duke University.
A Bayesian Framework for Statistical Inference from Gene Expression Data
Reprints and Corporate Permissions
Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?
To request a reprint or corporate permissions for this article, please click on the relevant link below:
Academic Permissions
Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?
Obtain permissions instantly via Rightslink by clicking on the button below:
If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.
Related research
People also read lists articles that other readers of this article have read.
Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.
Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.