A genetic diversity analysis of South African sorghum genotypes using SSR markers

References

• Ali ML, Rajewski JF, Baenziger PS, Gill KS, Eskridge KM, Dweikat L. 2008. Assessment of genetic diversity and relationship among a collection of US sweet sorghum germplasm by SSR markers. Molecular Breeding 21: 497–509.
   Web of Science ®Google Scholar
• Anas T, Yoshida T. 2004. Genetic diversity among Japanese cultivated sorghum assessed with simple sequence repeat markers. Plant Production Science 7: 217–223.
   Web of Science ®Google Scholar
• Assar AHA, Uptmoor R, Abdelmula AA, Salih M, Ordon F, Friedt W. 2005. Genetic variation in sorghum germplasm from Sudan, ICRISAT, and USA assessment by simple sequence repeats (SSRs). Crop Science 45: 1636–1644.
   Web of Science ®Google Scholar
• Barnaud A, Trigueros G, McKey D, Joly HI. 2008. High outcrossing rates in fields with mixed sorghum landraces: how are landraces maintained? Heredity 101: 445–452.
   PubMed Web of Science ®Google Scholar
• Case AM, Mitchell SE, Hamblin MT, Sun H, Bowers JE, Aquadro PCF, Kresovich S. 2005. Diversity and selection in sorghum: simultaneous analysis using simple sequence repeats. Theoretical and Applied Genetics 111: 23–30.
   PubMed Web of Science ®Google Scholar
• DAFF (Department of Agriculture, Forestry and Fisheries). 2010. Sorghum production guidelines. Pretoria: DAFF.
   Google Scholar
• Dean RE, Dahlberg JA, Hopkins MS, Mitchell SE, Kresovich S. 1999. Genetic redundancy and diversity among ‘orange’ accessions in the U.S. national sorghum collection as assessed with simple sequence repeat (SSR) markers. Crop Science 39: 1215–1221.
   Web of Science ®Google Scholar
• Deu M, Rattunde F, Chantereau J. 2006. A global view of genetic diversity in cultivated sorghums using a core collection. Genome 49: 168–180.
   PubMed Web of Science ®Google Scholar
• Djè Y, Heuertz M, Lefèbvre C, Vekemans X. 2000. Assessment of genetic diversity within and among germplasm accessions in cultivated sorghum using microsatellite markers. Theoretical and Applied Genetics 100: 918–925.
   Web of Science ®Google Scholar
• FAO (Food and Agriculture Organization of the United Nations) 2006. World agriculture: towards 2030/2050. Interim Report. Rome: Global Perspective Studies Unit, FAO.
   Google Scholar
• Ganesamurthy K, Punitha D, Elangovan M. 2010. Genetic diversity among the land races of sorghum collected in Tamil Nadu. Electronic Journal of Plant Breeding 1: 1375–1379.
   Google Scholar
• Geleta N, Labuschagne MT, Viljoen CD. 2006. Genetic diversity analysis in sorghum germplasm as estimated by AFLP, SSR and morpho-agronomical markers. Biodiversity and Conservation 15: 3251–3265.
   Web of Science ®Google Scholar
• Harlan JR. 1975. Crops and man. Madison: American Society of Agronomy and Crop Science Society of America.
   Google Scholar
• Kumar P, Khanna VK. 2009. Assessment of genetic diversity in cultivated sorghum (Sorghum bicolor L. Moench) accesions using microsattelite markers. Pantnagar Journal of Research 7: 143–149.
   Google Scholar
• Mann JA, Kimber CT, Miller FR. 1983. The origin and early cultivation of sorghums in Africa. Bulletin 1454. College Station: Texas Agricultural Experiment Station, Texas A&M University System.
   Google Scholar
• Manzelli M, Pileri L, Lacerenza N, Bendettelli S, Vecchio V. 2007. Genetic diversity assessment in Somalia sorghum (Sorghum bicolor (L.) Moench) accessions using microsatellite markers. Biodiversity Conservation 16: 1715–1730.
   Web of Science ®Google Scholar
• Menz M, Klein R, Unruh N, Rooney W, Klein P, Mullet J. 2004. Genetic diversity of public inbreds of sorghum determined by mapped AFLP and SSR markers. Crop Science 4: 1236–1244.
   Web of Science ®Google Scholar
• Muraya MM, de Villiers S, Parzies HK, Mutegi E, Sagnard F, Kanyenji BM, Kiambi D, Geiger HH. 2011. Genetic structure and diversity of wild sorghum populations (Sorghum spp.) from different eco-geographical regions of Kenya. Theoretical and Applied Genetics 123: 571–583.
   PubMed Web of Science ®Google Scholar
• Ng'uni D, Geleta M, Bryngelsson T. 2011. Genetic diversity in sorghum (Sorghum bicolor (L.) Moench) accessions of Zambia as revealed by simple sequence repeats (SSR). Hereditas 148: 52–62.
   PubMed Web of Science ®Google Scholar
• Nkongolo KK, Nsapato L. 2003. Genetic diversity in Sorghum bicolor (L.) Moench accessions from different ecogeographical regions in Malawi assessed with RAPDs. Genetic Resources and Crop Evolution 50: 149–156.
   Web of Science ®Google Scholar
• Paterson AH, Bowers JE, Maher CA, Narechania A, Zhang L, Ware D, Messing J, Rokhsar DS. 2009. The Sorghum bicolor genome and the diversification of grasses. Nature 457: 551–556.
   PubMed Web of Science ®Google Scholar
• Pei Z, Gao J, Chen Q, Wei J, Li Z, Luo F, Shi L, Ding B, Sun S. 2010. Genetic diversity of elite sweet sorghum genotypes assessed by SSR markers. Biologia Plantarum 54: 653–658.
   Web of Science ®Google Scholar
• Perrier X, Jacquemoud-Collet JP. 2006. DARwin software. Available at http://www.darwin.cirad.fr/darwin.html [accessed 2 August 2014].
   Google Scholar
• Perumal R, Krishnaramanujam R, Menz MA, Katile S, Dahlberg J, Magill CW, Rooney WL. 2007. Genetic diversity among sorghum races and working groups based on AFLPs and SSRs. Crop Science 47: 1375–1383.
   Web of Science ®Google Scholar
• Reddy SVR, Khanna VK, Pant GB. 2010. Molecular fingerprinting of sorghum (Sorghum bicolor L. Moench) germplasm using simple sequence repeat markers. Pantnagar Journal of Research 8: 180–186.
   Google Scholar
• Reif JC, Melchinger AE, Xia XC, Warburton ML, Hoisington DA, Vasal SK, Beck D, Bohn M, Frisch M. 2003. Use of SSRs for establishing heterotic groups in subtropical maize. Theoretical and Applied Genetics 107: 947–957.
   PubMed Web of Science ®Google Scholar
• Rogstad SH. 2003. Plant DNA extraction using silica. Plant Molecular Biology Reporter 21: 463.
   Google Scholar
• Smith JSC, Chin ECL, Shu H, Smith OH, Wall SJ, Senior ML, Mitchell SE, Kresovich S, Ziegle J. 1997. An evaluation of the utility of SSR loci as molecular makers in maize (Zea mays L.): comparison with data from RFLPs and pedigree. Theoretical and Applied Genetics 95: 163–173.
   Web of Science ®Google Scholar
• Taylor JRN. 2003. Overview: importance of sorghum in Africa. In: Belton PS, Taylor JRN (eds), Proceedings of the AFRIPRO workshop on the proteins of sorghums and millets: enhancing nutritional and functional properties for Africa, April2–42003, Pretoria, South Africa. Paper 01.
   Google Scholar
• Thudi M, Fakrudin B. 2011. Identification of unique alleles and assessment of genetic diversity of rabi sorghum accessions using simple sequence repeat markers. Journal of Plant Biochemistry and Biotechnology 20: 74–83.
   Web of Science ®Google Scholar
• Tukeswa AB, Mosha TCE, Laswai HS, Towo EE. 2000. Traditional alcoholic beverages of Tanzania: production, quality and changes in quality attributes during storage. International Journal of Food Science and Nutrition 51: 135–143.
   PubMed Web of Science ®Google Scholar
• Uptmoor R, Wenzel W, Friedt W, Donaldson G, Ayisi K, Ordon F. 2003. Comparative analysis on the genetic relatedness of Sorghum bicolor accessions from southern Africa by RAPDs, AFLPs and SSRs. Theoretical and Applied Genetics 106: 1316–1325.
   PubMed Web of Science ®Google Scholar
• Wang ML, Zhu C, Barkley NA, Chen Z, Erpelding JE, Murray SC, Tuinstra MR, Tesso T, Pederson GA, Yu J. 2009. Genetic diversity and population structure analysis of accessions in the US historic sweet sorghum collection. Theoretical and Applied Genetics 120: 13–23.
   PubMed Web of Science ®Google Scholar
• Wenzel WG, van Loggerenberg M, Ordon F. 2001. Quick screening methods for sorghum quality traits. Journal of Applied Botany 73: 43–45.
   Google Scholar
• Xiao J, Li J, Yuan L, McCough S, Tanks SR. 1996. Genetic diversity and its relationship to hybrid performance and heterosis as revealed by PCR based markers. Theoretical and Applied Genetics 92: 637–643.
   PubMed Web of Science ®Google Scholar
• Yang X, Xu Y, Shah T, Li H, Han Z, Li J, Yan J. 2011. Comparison of SSRs and SNPs in assessment of genetic relatedness in maize. Genetica 139: 1045–1054.
   PubMed Web of Science ®Google Scholar