The plant endosphere-hidden treasures: a review of fungal endophytes

References

• Adeleke, B. S., Ayangbenro, A. S., & Babalola, O. O. (2021a). Genomic analysis of endophytic Bacillus cereus T4S and its plant growth-promoting traits. Plants, 10(9), 1776. https://doi.org/https://doi.org/10.3390/plants10091776
   Web of Science ®Google Scholar
• Adeleke, B. S., Ayangbenro, A. S., & Babalola, O. O. (2021b). Genomic assessment of Stenotrophomonas indicatrix for improved sunflower plant. Current Genetics, 1–17. https://doi.org/https://doi.org/10.1007/s00294-00021-01199-00298.
   Google Scholar
• Adeleke, B. S., & Babalola, O. O. (2020a). The endosphere microbial communities, a great promise in agriculture. International Microbiology, 24, 1–17. https://doi.org/https://doi.org/10.1007/s10123-020-00140-21
   PubMed Web of Science ®Google Scholar
• Adeleke, B. S., & Babalola, O. O. (2020b). Oilseed crop sunflower (Helianthus annuus) as a source of food: nutritional and health benefits. Food Science and Nutrition, 8(9), 4666–4684. Article fsn3.1783. https://doi.org/https://doi.org/10.1002/fsn3.1783
   Web of Science ®Google Scholar
• Adeleke, B. S., & Babalola, O. O. (2021a). Biotechnological overview of agriculturally important endophytic fungi. Horticulture, Environment, and Biotechnology, 62(4), 507–520. https://doi.org/https://doi.org/10.1007/s13580-021-00334-1
   Web of Science ®Google Scholar
• Adeleke, B. S., & Babalola, O. O. (2021b). Pharmacological potential of fungal endophytes associated with medicinal plants: A review. Journal of Fungi, 7(2), 147. https://doi.org/https://doi.org/10.3390/jof7020147
   Web of Science ®Google Scholar
• Adeleke, B. S., & Babalola, O. O. (2021c). Roles of plant endosphere microbes in agriculture - a review. In : EgamberdievaDilfuza and TiezziAntonio (Eds). Journal of Plant Growth Regulation (pp. 1–18). https://doi.org/https://doi.org/10.1007/s00344-021-10406–2.
   Google Scholar
• Al-Ani, L. K. T. (2019). The importance of endophytic fungi from the medicinal plant: Diversity, natural bioactive compounds, and control of plant pathogens. In Medically Important Plant Biomes: Source of Secondary Metabolites (pp. 189–238). Springer.
   Google Scholar
• Ancheeva, E., Daletos, G., & Proksch, P. (2020). Bioactive secondary metabolites from endophytic fungi. In Shafiquzzaman Siddiquee, Gan Jet Hong Melvin and Md. Mizanur Rahman (Eds). Current Medicinal Chemistry, (27(11), pp. 1836–1854. Springer. 10.2174/0929867326666190916144709.
   Google Scholar
• Audah, K. A. (2019). Drug discovery: A biodiversity perspective. In Nanotechnology: Applications in energy, drug and food (pp. 249–265).
   Google Scholar
• Audipudi, A., Chakicherla, B., & Bhore, S. (2017). Bacterial endophytes as biofertilizers and biocontrol agents for sustainable agriculture. Biotechnology and Sustainability, 1, 223–247.
   Google Scholar
• Babalola, O. O., Adeleke, B. S., & Ayangbenro, A. S. (2021b). Whole genome sequencing of sunflower root-associated Bacillus cereus. Evolutionary Bioinformatics, 17, 1–6. https://doi.org/https://doi.org/10.1177/11769343211038948
   Web of Science ®Google Scholar
• Babalola, O. O., Adeleke, B. S., & Ayangbenro, A. S. (2021a). Draft genome sequencing of Stenotrophomonas indicatrix BOVIS40 and Stenotrophomonas maltophilia JVB5, two strains with identifiable genes involved in plant growth promotion. Microbiology Resource Announcements, 10(28), 482. https://doi.org/https://doi.org/10.1128/MRA.00482-21
   Web of Science ®Google Scholar
• Babalola, O. O., Emmanuel, O. C., Adeleke, B. S., Odelade, K. A., Nwachukwu, B. C., Ayiti, O. E., Adegboyega, T. T., & Igiehon, N. O. (2021c). Rhizosphere microbiome cooperations: Strategies for sustainable crop production. Current Microbiology, 78(4), 1069–1085. https://doi.org/https://doi.org/10.1007/s00284-021-02375-2
   PubMed Web of Science ®Google Scholar
• Bahadur, S., Khan, M. S., Shah, M., Shuaib, M., Ahmad, M., Zafar, M., Begum, N., Gul, S., Ashfaq, S., Mujahid, I., & Hussain, F. (2020). Traditional usage of medicinal plants among the local communities of Peshawar valley, Pakistan. Acta Ecologica Sinica, 40(1), 1–29. https://doi.org/https://doi.org/10.1016/j.chnaes.2018.12.006
   Google Scholar
• Baltrus, D. A. (2017). Adaptation, specialization, and coevolution within phytobiomes. Current Opinion in Plant Biology, 38, 109–116. https://doi.org/https://doi.org/10.1016/j.pbi.2017.04.023
   PubMed Web of Science ®Google Scholar
• Bamisile, B. S., Dash, C. K., Akutse, K. S., Keppanan, R., Afolabi, O. G., Hussain, M., Qasim, M., & Wang, L. (2018). Prospects of endophytic fungal entomopathogens as biocontrol and plant growth promoting agents: An insight on how artificial inoculation methods affect endophytic colonization of host plants. Microbiological Research, 217, 34–50. https://doi.org/https://doi.org/10.1016/j.micres.2018.08.016
   PubMed Web of Science ®Google Scholar
• Bhatti, A. A., Haq, S., & Bhat, R. A. (2017). Actinomycetes benefaction role in soil and plant health. Microbial Pathogenesis, 111, 458–467. https://doi.org/https://doi.org/10.1016/j.micpath.2017.09.036
   PubMed Web of Science ®Google Scholar
• Bianchini, L. F., Arruda, M. F., Vieira, S. R., Campelo, P., Grégio, A. M., & Rosa, E. A. (2015). Microbial biotransformation to obtain new antifungals. Frontiers in Microbiology, 6, 1433. https://doi.org/https://doi.org/10.3389/fmicb.2015.01433
   PubMed Web of Science ®Google Scholar
• Bier, M. C. J., Medeiros, A. B. P., & Soccol, C. R. (2017). Biotransformation of limonene by an endophytic fungus using synthetic and Orange residue-based media. Fungal Biology, 121(2), 137–144. https://doi.org/https://doi.org/10.1016/j.funbio.2016.11.003
   PubMed Web of Science ®Google Scholar
• Carroll, G. (1986). The biology of endophytism in plants with particular reference to woody ornamentals. In N. J. Fokkema & J. van den Heuvel (Eds.), Microbiology of the Phyllosphere (pp. 205–222). Cambridge University Press. https://ci.nii.ac.jp/naid/20001355511/#cit
   Google Scholar
• Caruso, G., Abdelhamid, M. T., Kalisz, A., & Sekara, A. (2020). Linking endophytic fungi to medicinal plants therapeutic activity. A case study on asteraceae. Agriculture, 10(7), 286. https://doi.org/https://doi.org/10.3390/agriculture10070286
   Web of Science ®Google Scholar
• Chen, L., Zhang, Q.-Y., Jia, M., Ming, Q.-L., Yue, W., Rahman, K., Qin, L.-P., & Han, T. (2016). Endophytic fungi with antitumor activities: Their occurrence and anticancer compounds. Critical Reviews in Microbiology, 42(3), 454–473. https://doi.org/https://doi.org/10.3109/1040841X.2014.959892
   PubMed Web of Science ®Google Scholar
• Chowdhary, K., Kaushik, N., & Ganapathi, T. R. (2015). Fungal endophyte diversity and bioactivity in the Indian medicinal plant Ocimum sanctum Linn. PloS One, 10(11), e0141444. https://doi.org/https://doi.org/10.1371/journal.pone.0141444
   PubMed Web of Science ®Google Scholar
• Compant, S., Sessitsch, A., & Mathieu, F. (2012). The 125th anniversary of the first postulation of the soil origin of endophytic bacteria–a tribute to MLV Galippe. Plant and Soil, 356(1), 299–301. https://doi.org/https://doi.org/10.1007/s11104-012-1204-9
   Web of Science ®Google Scholar
• Cope-Selby, N., Cookson, A., Squance, M., Donnison, I., Flavell, R., & Farrar, K. (2017). Endophytic bacteria in Miscanthus seed: Implications for germination, vertical inheritance of endophytes, plant evolution and breeding. Gcb Bioenergy, 9(1), 57–77. https://doi.org/https://doi.org/10.1111/gcbb.12364
   Web of Science ®Google Scholar
• Dastogeer, K., Oshita, Y., Yasuda, M., Kanasugi, M., Matsuura, E., Xu, Q., & Okazaki, S. (2020). Host specificity of endophytic fungi from stem tissue of nature farming tomato (Solanum lycopersicum Mill.) in Japan. Agronomy, 10(7), 1019. https://doi.org/https://doi.org/10.3390/agronomy10071019
   Web of Science ®Google Scholar
• Deepika, V. B., Murali, T. S., & Satyamoorthy, K. (2016). Modulation of genetic clusters for synthesis of bioactive molecules in fungal endophytes: A review. Microbiological Research, 182, 125–140. https://doi.org/https://doi.org/10.1016/j.micres.2015.10.009
   PubMed Web of Science ®Google Scholar
• dos Santos Souza, C. R., de Oliveira Barbosa, A. C., Fortes Ferreira, C., F, V. D. S., de Souza Rocha, L., de Souza, E. H., & de Oliveira, S. A. S. (2019). Diversity of microorganisms associated to Ananas spp. from natural environment, cultivated and ex situ conservation areas. Scientia Horticulturae, 243, 544–551. https://doi.org/https://doi.org/10.1016/j.scienta.2018.09.015
   Web of Science ®Google Scholar
• Dubey, A., Saiyam, D., Kumar, A., Hashem, A., Abd_Allah, E. F., & Khan, M. L. (2021). Bacterial root endophytes: Characterization of their competence and plant growth promotion in soybean (Glycine max (L.) Merr.) under drought stress. International Journal of Environmental Research and Public Health, 18(3), 931. https://doi.org/https://doi.org/10.3390/ijerph18030931
   PubMed Web of Science ®Google Scholar
• Egamberdieva, D., Wirth, S., Behrendt, U., Ahmad, P., & Berg, G. (2017). Antimicrobial activity of medicinal plants correlates with the proportion of antagonistic endophytes. Frontiers in Microbiology, 8, 199. https://doi.org/https://doi.org/10.3389/fmicb.2017.00199
   PubMed Web of Science ®Google Scholar
• Eke, P., Kumar, A., Sahu, K. P., Wakam, L. N., Sheoran, N., Ashajyothi, M., Patel, A., & Fekam, F. B. (2019). Endophytic bacteria of desert cactus (Euphorbia trigonas Mill) confer drought tolerance and induce growth promotion in tomato (Solanum lycopersicum L.). Microbiological Research, 228, 126302. https://doi.org/https://doi.org/10.1016/j.micres.2019.126302
   PubMed Web of Science ®Google Scholar
• Ekiz, G., Duman, S., & Bedir, E. (2018). Biotransformation of cyclocanthogenol by the endophytic fungus Alternaria eureka 1E1BL1. Phytochemistry, 151, 91–98. https://doi.org/https://doi.org/10.1016/j.phytochem.2018.04.006
   PubMed Web of Science ®Google Scholar
• Eljounaidi, K., Lee, S. K., & Bae, H. (2016). Bacterial endophytes as potential biocontrol agents of vascular wilt diseases–review and future prospects. Biological Control, 103, 62–68. https://doi.org/https://doi.org/10.1016/j.biocontrol.2016.07.013
   Web of Science ®Google Scholar
• Fadiji, A. E., & Babalola, O. O. (2020). Elucidating mechanisms of endophytes used in plant protection and other bioactivities with multifunctional prospects. Frontiers in Bioengineering and Biotechnology, 8, 467. https://doi.org/https://doi.org/10.3389/fbioe.2020.00467
   PubMed Web of Science ®Google Scholar
• Fernandes, S., Belo, I., & Lopes, M. (2021). Highly aerated cultures boost gluconic acid production by the yeast-like fungus Aureobasidium pullulans. Biochemical Engineering Journal, 175, 108133. https://doi.org/https://doi.org/10.1016/j.bej.2021.108133
   Web of Science ®Google Scholar
• Fernandez, J. C., & Burch-Smith, T. M. (2019). Chloroplasts as mediators of plant biotic interactions over short and long distances. Current Opinion in Plant Biology, 50, 148–155. https://doi.org/https://doi.org/10.1016/j.pbi.2019.06.002
   PubMed Web of Science ®Google Scholar
• Foito, A., & Stewart, D. (2018). Metabolomics: A high-throughput screen for biochemical and bioactivity diversity in plants and crops. Current Pharmaceutical Design, 24(19), 2043–2054. https://doi.org/https://doi.org/10.2174/1381612824666180515125926
   PubMed Web of Science ®Google Scholar
• Fouda, A., Eid, A. M., Elsaied, A., El-Belely, E. F., Barghoth, M. G., Azab, E., Gobouri, A. A., & Hassan, S. E.-D. (2021). Plant growth-promoting endophytic bacterial community inhabiting the leaves of Pulicaria incisa (Lam.) DC Inherent to arid regions. Plants, 10(1), 76. https://doi.org/https://doi.org/10.3390/plants10010076
   Web of Science ®Google Scholar
• Fouda, A. H., Hassan, S. E.-D., Eid, A. M., & Ewais, E. E.-D. (2015). Biotechnological applications of fungal endophytes associated with medicinal plant Asclepias sinaica (Bioss.). Annals of Agricultural Sciences, 60(1), 95–104. https://doi.org/https://doi.org/10.1016/j.aoas.2015.04.001
   Google Scholar
• Ghosh, P., Chatterjee, S., Das, P., Karmakar, S., & Mahapatra, S. (2019). Natural habitat, phytochemistry and pharmacological properties of a medicinal weed - Cleome rutidosperma DC. (Cleomaceae): A comprehensive review. International Journal of Pharmaceutical Sciences and Research, 10(4), 1605–1612.
   Web of Science ®Google Scholar
• Gouda, S., Das, G., Sen, S. K., Shin, H.-S., & Patra, J. K. (2016). Endophytes: A treasure house of bioactive compounds of medicinal importance. Frontiers in Microbiology, 7, 1538. https://doi.org/https://doi.org/10.3389/fmicb.2016.01538
   PubMed Web of Science ®Google Scholar
• Gupta, S., Chaturvedi, P., Kulkarni, M. G., & Van Staden, J. (2020). A critical review on exploiting the pharmaceutical potential of plant endophytic fungi. Biotechnology Advances, 39, 107462. https://doi.org/https://doi.org/10.1016/j.biotechadv.2019.107462
   PubMed Web of Science ®Google Scholar
• Hartmann, A., Fischer, D., Kinzel, L., Chowdhury, S. P., Hofmann, A., Baldani, J. I., & Rothballer, M. (2019). Assessment of the structural and functional diversities of plant microbiota: Achievements and challenges - A review. Journal of Advanced Research, 19, 3–13. https://doi.org/https://doi.org/10.1016/j.jare.2019.04.007
   PubMed Web of Science ®Google Scholar
• Hassan, A., & Ullah, H. (2019). Antibacterial and antifungal activities of the medicinal plant Veronica biloba. Journal of Chemistry, 5264943. https://doi.org/https://doi.org/10.1155/2019/5264943
   Web of Science ®Google Scholar
• He, Y., Wang, X., Ma, B., & Xu, J. (2019). Ramanome technology platform for label-free screening and sorting of microbial cell factories at single-cell resolution. Biotechnology Advances, 37(6), 107388. https://doi.org/https://doi.org/10.1016/j.biotechadv.2019.04.010
   PubMed Web of Science ®Google Scholar
• Hiruma, K., Kobae, Y., & Toju, H. (2018). Beneficial associations between Brassicaceae plants and fungal endophytes under nutrient-limiting conditions: Evolutionary origins and host–symbiont molecular mechanisms. Current Opinion in Plant Biology, 44, 145–154. https://doi.org/https://doi.org/10.1016/j.pbi.2018.04.009
   PubMed Web of Science ®Google Scholar
• Hosseinzadeh, S., Jafarikukhdan, A., Hosseini, A., & Armand, R. (2015). The application of medicinal plants in traditional and modern medicine: A review of thymus vulgaris. International Journal of Clinical Medicine, 6(9), 635. https://doi.org/https://doi.org/10.4236/ijcm.2015.69084
   Google Scholar
• Jia, M., Chen, L., Xin, H.-L., Zheng, C.-J., Rahman, K., Han, T., & Qin, L.-P. (2016). A friendly relationship between endophytic fungi and medicinal plants: A systematic review. Frontiers in Microbiology, 7, 906. https://doi.org/https://doi.org/10.3389/fmicb.2016.00906
   PubMed Web of Science ®Google Scholar
• Kaur, J., Kaur, R., & Nagpal, A. (2020). Traditional use of ethnomedicinal plants among people of Kapurthala District, Punjab, India. Pharmacognosy Magazine, 16(68), 69–80. https://doi.org/https://doi.org/10.4103/pm.pm_311_19
   Web of Science ®Google Scholar
• Ke, J., & Yoshikuni, Y. (2020). Multi-chassis engineering for heterologous production of microbial natural products. Current Opinion in Biotechnology, 62, 88–97. https://doi.org/https://doi.org/10.1016/j.copbio.2019.09.005
   PubMed Web of Science ®Google Scholar
• Khalil, A. M. A., Hassan, S. E.-D., Alsharif, S. M., Eid, A. M., Ewais, E. E.-D., Azab, E., Gobouri, A. A., Elkelish, A., & Fouda, A. (2021). Isolation and characterization of fungal endophytes isolated from medicinal plant Ephedra pachyclada as plant growth-promoting. Biomolecules, 11(2), 140. https://doi.org/https://doi.org/10.3390/biom11020140
   PubMed Web of Science ®Google Scholar
• Khan, A. L., Kang, S.-M., Dhakal, K. H., Hussain, J., Adnan, M., Kim, J.-G., & Lee, I.-J. (2013). Flavonoids and amino acid regulation in Capsicum annuum L. by endophytic fungi under different heat stress regimes. Scientia Horticulturae, 155, 1–7. https://doi.org/https://doi.org/10.1016/j.scienta.2013.02.028
   Web of Science ®Google Scholar
• Konyalı, S. (2017). Sunflower production and agricultural policies in Turkey. Social Sciences Research Journal, 6(4), 11–19. https://dergipark.org.tr/en/pub/ssrj/issue/32264/343313
   Google Scholar
• Krishnaiah, D., Sarbatly, R., & Nithyanandam, R. (2011). A review of the antioxidant potential of medicinal plant species. Food and Bioproducts Processing, 89(3), 217–233. https://doi.org/https://doi.org/10.1016/j.fbp.2010.04.008
   Web of Science ®Google Scholar
• Lata, R. K., Divjot, K., & Nath, Y. A. (2019). Endophytic microbiomes: Biodiversity, ecological significance and biotechnological applications. Research Journal of Biotechnology 14, 10.
   Google Scholar
• Li, S.-J., Zhang, X., Wang, X.-H., & Zhao, C.-Q. (2018). Novel natural compounds from endophytic fungi with anticancer activity. European Journal of Medicinal Chemistry, 156, 316–343. https://doi.org/https://doi.org/10.1016/j.ejmech.2018.07.015
   PubMed Web of Science ®Google Scholar
• Lou, J., Fu, L., Peng, Y., & Zhou, L. (2013). Metabolites from Alternaria fungi and their bioactivities. Molecules, 18(5), 5891–5935. https://doi.org/https://doi.org/10.3390/molecules18055891
   PubMed Web of Science ®Google Scholar
• Lou, J., Yu, R., Wang, X., Mao, Z., Fu, L., Liu, Y., & Zhou, L. (2016). Alternariol 9-methyl ether from the endophytic fungus Alternaria sp. Samif01 and its bioactivities. Brazilian Journal of Microbiology, 47(1), 96–101. https://doi.org/https://doi.org/10.1016/j.bjm.2015.11.004
   PubMed Web of Science ®Google Scholar
• Lu, S., Qiu, Y., Ni, D., He, X., Pu, J., & Zhang, J. (2020). Emergence of allosteric drug-resistance mutations: New challenges for allosteric drug discovery. Drug Discovery Today, 25(1), 177–184. https://doi.org/https://doi.org/10.1016/j.drudis.2019.10.006
   PubMed Web of Science ®Google Scholar
• Manganyi, M., Regnier, T., Kumar, A., Bezuidenhout, C., & Ateba, C. (2018). Biodiversity and antibacterial screening of endophytic fungi isolated from Pelargonium sidoides. South African Journal of Botany, 116, 192–199. https://doi.org/https://doi.org/10.1016/j.sajb.2018.03.016
   Web of Science ®Google Scholar
• Manganyi, M. C., Tchatchouang, C.-D. K., Regnier, T., Bezuidenhout, C. C., & Ateba, C. N. (2019). Bioactive Compound Produced by Endophytic Fungi Isolated From Pelargonium sidoides Against Selected Bacteria of Clinical Importance. Mycobiology, 47(3), 335–339. https://doi.org/https://doi.org/10.1080/12298093.2019.1631121
   PubMed Web of Science ®Google Scholar
• Mani, V. M., Gnana Soundari, A. P., Karthiyaini, D., & Preethi, K. (2015). Bioprospecting endophytic fungi and their metabolites from medicinal tree aegle marmelos in Western Ghats, India. Mycobiology, 43(3), 303–310. https://doi.org/https://doi.org/10.5941/MYCO.2015.43.3.303
   PubMed Web of Science ®Google Scholar
• Mantzoukas, S., & Eliopoulos, P. A. (2020). Endophytic entomopathogenic fungi: A valuable biological control tool against plant pests. Applied Sciences, 10(1), 360. https://doi.org/https://doi.org/10.3390/app10010360
   Google Scholar
• Maqsood, S., Adiamo, O., Ahmad, M., & Mudgil, P. (2020). Bioactive compounds from date fruit and seed as potential nutraceutical and functional food ingredients. Food Chemistry, 308, 125522. https://doi.org/https://doi.org/10.1016/j.foodchem.2019.125522
   PubMed Web of Science ®Google Scholar
• Marquez, L., & Quave, C. L. (2020). Prevalence and therapeutic challenges of fungal drug resistance: Role for plants in drug discovery. Antibiotics, 9(4), 150. https://doi.org/https://doi.org/10.3390/antibiotics9040150
   Web of Science ®Google Scholar
• Martínez-Diz, M. D. P., Andrés-Sodupe, M., Bujanda, R., Díaz-Losada, E., Eichmeier, A., & Gramaje, D. (2019). Soil-plant compartments affect fungal microbiome diversity and composition in grapevine. Fungal Ecology, 41, 234–244. https://doi.org/https://doi.org/10.1016/j.funeco.2019.07.003
   Web of Science ®Google Scholar
• Martinez-Klimova, E., Rodríguez-Peña, K., & Sánchez, S. (2017). Endophytes as sources of antibiotics. Biochemical Pharmacology, 134, 1–17. https://doi.org/https://doi.org/10.1016/j.bcp.2016.10.010
   PubMed Web of Science ®Google Scholar
• Michel, J., Abd Rani, N. Z., & Husain, K. (2020). A review on the potential use of medicinal plants from Asteraceae and Lamiaceae plant family in cardiovascular diseases. Frontiers in Pharmacology, 11, 852. https://doi.org/https://doi.org/10.3389/fphar.2020.00852
   PubMed Web of Science ®Google Scholar
• Mohotti, S., Rajendran, S., Muhammad, T., Strömstedt, A. A., Adhikari, A., Burman, R., De Silva, E. D., Göransson, U., Hettiarachchi, C. M., & Gunasekera, S. (2020). Screening for bioactive secondary metabolites in Sri Lankan medicinal plants by microfractionation and targeted isolation of antimicrobial flavonoids from Derris scandens. Journal of Ethnopharmacology, 246, 112158. https://doi.org/https://doi.org/10.1016/j.jep.2019.112158
   PubMed Web of Science ®Google Scholar
• Morales-Cedeño, L. R., del Carmen Orozco-Mosqueda, M., Loeza-Lara, P. D., Parra-Cota, F. I., de Los Santos-Villalobos, S., & Santoyo, G. (2020). Plant growth-promoting bacterial endophytes as biocontrol agents of pre-and post-harvest diseases: Fundamentals, methods of application and future perspectives. Microbiological Research, 242, 126612. https://doi.org/https://doi.org/10.1016/j.micres.2020.126612
   PubMed Web of Science ®Google Scholar
• Morales-Sánchez, V., Fe Andrés, M., Díaz, C. E., & González-Coloma, A. (2020). Factors affecting the metabolite productions in endophytes: Biotechnological approaches for production of metabolites. Current Medicinal Chemistry, 27(11), 1855–1873. https://doi.org/https://doi.org/10.2174/0929867326666190626154421
   PubMed Web of Science ®Google Scholar
• Müller, C. B., & Krauss, J. (2005). Symbiosis between grasses and asexual fungal endophytes. Current Opinion in Plant Biology, 8(4), 450–456. https://doi.org/https://doi.org/10.1016/j.pbi.2005.05.007
   PubMed Web of Science ®Google Scholar
• Naik, B. S. (2019). Developments in taxol production through endophytic fungal biotechnology: A review. Oriental Pharmacy and Experimental Medicine, 19(1), 1–13. https://doi.org/https://doi.org/10.1007/s13596-018-0352-8
   Web of Science ®Google Scholar
• Nalini, M., & Prakash, H. (2017). Diversity and bioprospecting of actinomycete endophytes from the medicinal plants. Letters in Applied Microbiology, 64(4), 261–270. https://doi.org/https://doi.org/10.1111/lam.12718
   PubMed Web of Science ®Google Scholar
• Ncube, B., Finnie, J., & Van Staden, J. (2012). Quality from the field: The impact of environmental factors as quality determinants in medicinal plants. South African Journal of Botany, 82, 11–20. https://doi.org/https://doi.org/10.1016/j.sajb.2012.05.009
   Web of Science ®Google Scholar
• Nisa, H., Kamili, A. N., Nawchoo, I. A., Shafi, S., Shameem, N., & Bandh, S. A. (2015). Fungal endophytes as prolific source of phytochemicals and other bioactive natural products: A review. Microbial Pathogenesis, 82, 50–59. https://doi.org/https://doi.org/10.1016/j.micpath.2015.04.001
   PubMed Web of Science ®Google Scholar
• Nivetha, L., & Kharwar, R. (2019). Antimicrobial and antioxidant activities of endophytes from Citrus Limon. Journal of Medicinal Plants, 7(6), 10–13. https://www.plantsjournal.com/archives/2019/vol7issue6/PartA/7-5-15-996.pdf
   Google Scholar
• Oyenihi, A., & Smith, C. (2019). Are polyphenol antioxidants at the root of medicinal plant anti-cancer success? Journal of Ethnopharmacology, 229, 54–72. https://doi.org/https://doi.org/10.1016/j.jep.2018.09.037
   PubMed Web of Science ®Google Scholar
• Palanichamy, P., Krishnamoorthy, G., Kannan, S., & Marudhamuthu, M. (2018). Bioactive potential of secondary metabolites derived from medicinal plant endophytes. Egyptian Journal of Basic and Applied Sciences, 5(4), 303–312. https://doi.org/https://doi.org/10.1016/j.ejbas.2018.07.002
   Google Scholar
• Pandey, G. (2018). Challenges and future prospects of agri-nanotechnology for sustainable agriculture in India. Environmental Technology and Innovation, 11, 299–307. https://doi.org/https://doi.org/10.1016/j.eti.2018.06.012
   Web of Science ®Google Scholar
• Passari, A. K., Mishra, V. K., Singh, G., Singh, P., Kumar, B., Gupta, V. K., Sarma, R. K., Saikia, R., Singh, B. P., & Singh, B. P. (2017). Insights into the functionality of endophytic actinobacteria with a focus on their biosynthetic potential and secondary metabolites production. Scientific Reports, 7(1), 1–17. https://doi.org/https://doi.org/10.1038/s41598-017-12235-4
   PubMed Web of Science ®Google Scholar
• Pelo, S., Mavumengwana, V., & Green, E. (2020). Diversity and antimicrobial activity of culturable fungal endophytes in Solanum mauritianum. International Journal of Environmental Research and Public Health, 17(2), 439. https://doi.org/https://doi.org/10.3390/ijerph17020439
   PubMed Web of Science ®Google Scholar
• Petrini, O., & Müller, E. (1979). Endophyte, am Beispiel von Juniperus communis L. Sydowia, 32, 224–251. https://www.zobodat.at/pdf/Sydowia_32_0224-0251.pdf
   Google Scholar
• Praptiwi, M. R., Wulansari, D., Fathoni, A., & Agusta, A. (2018). Antibacterial and antioxidant activities of endophytic fungi extracts of medicinal plants from Central Sulawesi. Journal of Applied Pharmaceutical Science, 8(8), 069–074. https://doi.org/https://doi.org/10.7324/JAPS.2018.8811
   Google Scholar
• Sahu, P. K., Singh, S., Gupta, A., Singh, U. B., Brahmaprakash, G., & Saxena, A. K. (2019). Antagonistic potential of bacterial endophytes and induction of systemic resistance against collar rot pathogen Sclerotium rolfsii in tomato. Biological Control, 137, 104014. https://doi.org/https://doi.org/10.1016/j.biocontrol.2019.104014
   Web of Science ®Google Scholar
• Salehi, M., Naghavi, M. R., & Bahmankar, M. (2019). A review of Ferula species: Biochemical characteristics, pharmaceutical and industrial applications, and suggestions for biotechnologists. Industrial Crops and Products, 139, 111511. https://doi.org/https://doi.org/10.1016/j.indcrop.2019.111511
   Web of Science ®Google Scholar
• Sandargo, B., Chepkirui, C., Cheng, T., Chaverra-Muñoz, L., Thongbai, B., Stadler, M., & Hüttel, S. (2019). Biological and chemical diversity go hand in hand: Basidiomycota as source of new pharmaceuticals and agrochemicals. Biotechnology Advances, 37(6), 107344. https://doi.org/https://doi.org/10.1016/j.biotechadv.2019.01.011
   PubMed Web of Science ®Google Scholar
• Santoyo, G., Moreno-Hagelsieb, G., del Carmen Orozco-Mosqueda, M., & Glick, B. R. (2016). Plant growth-promoting bacterial endophytes. Microbiological Research, 183, 92–99. https://doi.org/https://doi.org/10.1016/j.micres.2015.11.008
   PubMed Web of Science ®Google Scholar
• Segaran, G., & Sathiavelu, M. (2019). Fungal endophytes: A potent biocontrol agent and a bioactive metabolites reservoir. Biocatalysis and Agricultural Biotechnology, 21, 101284. https://doi.org/https://doi.org/10.1016/j.bcab.2019.101284
   Web of Science ®Google Scholar
• Shah, S., Shrestha, R., Maharjan, S., Selosse, M.-A., & Pant, B. (2019). Isolation and characterization of plant growth-promoting endophytic fungi from the roots of Dendrobium moniliforme. Plants, 8(1), 5. https://doi.org/https://doi.org/10.3390/plants8010005
   Web of Science ®Google Scholar
• Shimoyama, T., Miyoshi, M., Nehira, T., Motojima, A., Oikawa, T., Laurence, O., & Igarashi, Y. (2018). Two new secondary metabolites from a fungus of the genus Robillarda. The Journal of Antibiotics, 71(4), 432–437. https://doi.org/https://doi.org/10.1038/s41429-017-0015-x
   PubMed Web of Science ®Google Scholar
• Shrivastava, M., Srivastav, A., Gandhi, S., Rao, S., Roychoudhury, A., Kumar, A., Singhal, R. K., Jha, S. K., & Singh, S. D. (2019). Monitoring of engineered nanoparticles in soil-plant system: A review. Environmental Nanotechnology, Monitoring and Management, 11, 100218. https://doi.org/https://doi.org/10.1016/j.enmm.2019.100218
   Google Scholar
• song, R.-Y., Wang, X.-B., Yin, G.-P., Liu, R.-H., Kong, L.-Y., & Yang, M.-H. (2017). Isocoumarin derivatives from the endophytic fungus, Pestalotiopsis sp. Fitoterapia, 122, 115–118. https://doi.org/https://doi.org/10.1016/j.fitote.2017.08.012
   PubMed Web of Science ®Google Scholar
• Stone, J. K., Bacon, C. W., & White, J. F., Jr. (2000). An overview of endophytic microbes: Endophytism defined. Microbial Endophytes (1st ed., pp. 28). CRC Press. https://doi.org/https://doi.org/10.1201/9781482277302-1
   Google Scholar
• Sugiyama, A. (2019). The soybean rhizosphere: Metabolites, microbes, and beyond—A review. Journal of Advanced Research, 19, 67–73. https://doi.org/https://doi.org/10.1016/j.jare.2019.03.005
   PubMed Web of Science ®Google Scholar
• Tanapichatsakul, C., Monggoot, S., Gentekaki, E., & Pripdeevech, P. (2018). Antibacterial and Antioxidant Metabolites of Diaporthe spp. Isolated from Flowers of Melodorum fruticosum. Current Microbiology, 75(4), 476–483. https://doi.org/https://doi.org/10.1007/s00284-017-1405-9
   PubMed Web of Science ®Google Scholar
• Toghueo, R. M. K. (2020). Bioprospecting endophytic fungi from Fusarium genus as sources of bioactive metabolites. Mycology, 11(1), 1–21. https://doi.org/https://doi.org/10.1080/21501203.2019.1645053
   PubMed Web of Science ®Google Scholar
• Torimiro, D., Yusuf, O., Subair, S., Amujoyegbe, B., Tselaesele, N., & Ayinde, J. (2014). Utilisation of sunflower crop among smallholder farmers in sub-Saharan Africa: Evidence from Nigeria and Botswana. Journal of Agricultural Extension and Rural Development, 6(9), 298–304. https://doi.org/https://doi.org/10.5897/JAERD2014.0579
   Google Scholar
• Torres-Mendoza, D., Ortega, H. E., & Cubilla-Rios, L. (2020). Patents on endophytic fungi related to secondary metabolites and biotransformation applications. Journal of Fungi, 6(2), 58. https://doi.org/https://doi.org/10.3390/jof6020058
   Web of Science ®Google Scholar
• Turrini, A., Sbrana, C., & Giovannetti, M. (2015). Belowground environmental effects of transgenic crops: A soil microbial perspective. Research in Microbiology, 166(3), 121–131. https://doi.org/https://doi.org/10.1016/j.resmic.2015.02.006
   PubMed Web of Science ®Google Scholar
• Urooj, F., Farhat, H., Ali, S. A., Ahmed, M., Sultana, V., Shams, Z. I., Ara, J., & Ehteshamul-Haque, S. (2018). Role of endophytic Penicillium species in suppressing the root rotting fungi of sunflower. Pakistan Journal of Botany, 50(4), 1621–1628. https://www.pakbs.org/pjbot/papers/1524267982.pdf
   Web of Science ®Google Scholar
• Vieitez, I., Maceiras, L., Jachmanián, I., & Alborés, S. (2018). Antioxidant and antibacterial activity of different extracts from herbs obtained by maceration or supercritical technology. The Journal of Supercritical Fluids, 133, 58–64. https://doi.org/https://doi.org/10.1016/j.supflu.2017.09.025
   Web of Science ®Google Scholar
• Wilson, D. (1993). Fungal endophytes: Out of sight but should not be out of mind. Oikos, 68(2), 379–384. https://doi.org/https://doi.org/10.2307/3544856
   Web of Science ®Google Scholar
• Wilson, D. (1995). Endophyte: The evolution of a term, and clarification of its use and definition. Oikos, 73(2), 274–276. https://doi.org/https://doi.org/10.2307/3545919
   Web of Science ®Google Scholar
• Wolde-meskel, E., van Heerwaarden, J., Abdulkadir, B., Kassa, S., Aliyi, I., Degefu, T., Wakweya, K., Kanampiu, F., & Giller, K. E. (2018). Additive yield response of chickpea (Cicer arietinum L.) to Rhizobium inoculation and phosphorus fertilizer across smallholder farms in Ethiopia. Agriculture, Ecosystems & Environment, 261, 144–152. https://doi.org/https://doi.org/10.1016/j.agee.2018.01.035
   PubMed Web of Science ®Google Scholar
• Wolfe, E. R., & Ballhorn, D. J. (2020). Do foliar endophytes matter in litter decomposition? Microorganisms, 8(3), 446. https://doi.org/https://doi.org/10.3390/microorganisms8030446
   PubMed Web of Science ®Google Scholar
• Xu, T., Cao, L., Zeng, J., Franco, C. M., Yang, Y., Hu, X., Liu, Y., Wang, X., Gao, Y., Bu, Z., Shi, L., Zhou, G., Zhou, Q., Liu, X., & Zhu, Y. (2019). The antifungal action mode of the rice endophyte Streptomyces hygroscopicus OsiSh-2 as a potential biocontrol agent against the rice blast pathogen. Pesticide Biochemistry and Physiology, 160, 58–69. https://doi.org/https://doi.org/10.1016/j.pestbp.2019.06.015
   PubMed Web of Science ®Google Scholar
• Yang, B., Huang, J., Zhou, X., Lin, X., Liu, J., Liao, S., Wang, J., Liu, F. A., Tao, H., & Liu, Y. (2018). The fungal metabolites with potential antiplasmodial activity. Current Medicinal Chemistry, 25(31), 3796–3825. https://doi.org/https://doi.org/10.2174/0929867325666180313105406
   PubMed Web of Science ®Google Scholar
• Yang, H., Ye, W., Ma, J., Zeng, D., Rong, Z., Xu, M., Wang, Y., & Zheng, X. (2018). Endophytic fungal communities associated with field-grown soybean roots and seeds in the Huang-Huai region of China. PeerJ, 6, e4713. https://doi.org/https://doi.org/10.7717/peerj.4713
   PubMed Web of Science ®Google Scholar
• Yin, X., Lu, J., Wang, Y., Liu, G., Hua, Y., Wan, X., Zhao, J., & Zhu, D. (2020). The abundance of nirS-type denitrifiers and anammox bacteria in rhizospheres was affected by the organic acids secreted from roots of submerged macrophytes. Chemosphere, 240, 124903. https://doi.org/https://doi.org/10.1016/j.chemosphere.2019.124903
   PubMed Web of Science ®Google Scholar
• Yuan, Z.-S., Liu, F., Liu, Z.-Y., Huang, Q.-L., Zhang, G.-F., & Pan, H. (2021). Structural variability and differentiation of niches in the rhizosphere and endosphere bacterial microbiome of moso bamboo (Phyllostachys edulis). Scientific Reports, 11(1), 1574. https://doi.org/https://doi.org/10.1038/s41598-021-80971-9
   PubMed Web of Science ®Google Scholar