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Original Articles

Bayesian hierarchical regression models for detecting QTLs in plant experiments

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Pages 799-808 | Published online: 19 Jun 2008

References

  • Bjornstad , A. , Westad , F. and Martens , H. 2004 . Analysis of genetic marker-phenotype relationships by jack-knifed partial least squares regression (PLSR) . Hereditas , 141 : 149 – 165 .
  • Boccalandro , H. E. 2001 . Ultraviolet B radiation enhances a phytochrome-B-mediated photomorphogenic response in Arabidopsis . Plant Physiol. , 126 : 780 – 788 .
  • Boone , E. L. , Ye , K. and Smith , E. P. 2005 . Evaluating the relationship between ecological and habitat conditions using hierarchical models . J. Agricultural Biol. Environmental Stat. , 5 : 131 – 147 .
  • Boone , E. L. 2006 . Analyzing quantitative trait loci for the Arabidopsis thaliana using Markov chain Monte Carlo model composition with restricted and unrestricted model spaces . Statistical Methodology , 3 : 69 – 78 .
  • Broman , K. and Speed , T. 2002 . A model selection approach for the identification of quantitative trait loci in experimental crosses . J. Roy. Stat. Soc. , 64 : 641 – 656 .
  • Gilks , W. R. , Richardson , S. and Spiegelhalter , D. J. 1996 . Markov Chain Monte Carlo in Practice , London : Chapman and Hall .
  • Lander , E. S. and Botstein , D. 1989 . Mapping Mendelian factors underlying traits using RFLP linkage maps . Genetics , 121 : 185 – 199 .
  • Lange , C. and Whittaker , J. C. 2001 . Mapping quantitative trait loci using generalized estimating equations . Genetics , 159 : 1325 – 1337 .
  • Loudet , O. 2002 . Bay-O × Shahdara recombinant inbred lines population: a powerful tool for the genetic dissection of complex traits in Arabidopsis . Theor. Appl. Genetics , 104 : 1173 – 1184 .
  • Lynch , M. and Walsh , B. 1998 . Genetics and Analysis of Quantitative Traits , Sunderland , MA : Sinauer Associates, Inc. .
  • Madigan , D. M. and Raftery , A. E. 1994 . Model selection and accounting for model uncertainty in graphical models using Occam's window . J. Amer. Stat. Assoc. , 89 : 1535 – 1546 .
  • Satagopan , J. M. 1996 . A Bayesian approach to detect quantitative trait loci using Markov chain Monte Carlo . Genetics , 144 : 805 – 816 .
  • Sen , S. and Churchill , G. A. 2001 . A statistical framework for quantitative trait mapping . Genetics , 159 : 371 – 387 .
  • Sillanpaa , M. J. and Arjas , E. 1998 . Bayesian mapping of multiple quantitative trait loci from incomplete inbred line cross data . Genetics , 148 : 1373 – 1388 .
  • Xu , S. 2003 . Estimating polygenic effects using markers of the entire genome . Genetics , 163 : 789 – 801 .
  • Yi , N. , Xu , S. and Allison , D. B. 2003 . Bayesian model choice and search strategies for mapping interacting quantitative trait loci . Genetics , 165 : 867 – 883 .
  • Zeng , Z. B. 1993 . Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci . Proc. Nat. Acad. Sci. USA , 90 : 10972 – 10976 .
  • Zeng , Z. B. 1994 . Precision mapping of quantitative trait loci . Genetics , 136 : 1457 – 1468 .
  • Zeng , Z. B. , Kao , C. H. and Basten , C. J. 1999 . Estimating the genetic architecture of quantitative traits . Genetic Res. , 74 : 279 – 289 .

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