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Original Articles

Evaluation of Laplace distribution-based ANOVA models applied to microarray data

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Pages 937-950 | Received 31 Aug 2009, Accepted 05 Jan 2010, Published online: 19 Jan 2011

References

  • Benjamini , Y. and Hochberg , Y. 1995 . Controlling the false discovery rate: A practical and powerful approach to multiple testing . J. R. Stat. Soc. Ser. B , 57 : 289 – 300 .
  • Cui , X. , Kerr , M. K. and Churchill , G. A. 2003 . Transformations for cDNA microarray data . Stat. Appl. Genet. Mol. Biol. , 2 ( 1 ) article 4
  • Cui , X. , Hwang , J. T.G. and Qiu , J. 2005 . Improved statistical tests for differential gene expression by shrinking variance components estimates . Biostatistics , 6 ( 1 ) : 59 – 75 .
  • Efron , B. and Tibshirani , R. 1987 . “ Statist. Sci. ” . In Bootstrap methods for standard errors, confidence intervals, and other measures of statistical accuracy , 54 – 77 . New York : Wiley .
  • Kerr , M. K. , Martin , M. and Churchill , G. A. 2000 . Analysis of variance for gene expression microarray data . J. Comput. Biol. , 7 : 819 – 838 .
  • Purdom , E. and Holmes , S. P. 2005 . Error distribution for gene expression data . Stat. Appl. Genet. Mol. Biol. , 4 ( 1 ) article 16
  • Smyth , G. K. 2004 . Linear models and empirical Bayes methods for assessing differential expression in microarray experiments . Stat. Appl. Genet. Mol. Biol. , 3 ( 1 ) : 1 – 29 .
  • Smyth , G. K. 2005 . “ Statist. Sci. ” . In Limma: Linear models for microarray data, in Bioinformatics and Computational Biology Solutions using R and Bioconductor , 397 – 420 . New York : Springer .
  • Troyanskaya , O. G. , Garber , M. E. , Brown , P. O. and Botstein , D. 2002 . Nonparametric methods for identifying differentially expressed genes in microarray data . Bioinformatics , 18 : 1454 – 1461 .
  • Tusher , V. , Tibshirani , R. and Chu , G. 2001 . Significance analysis of microarrays applied to the ionizing radiation response . Proc. Natl Acad. Sci. USA , 98 : 5116 – 5121 .
  • Van Breda , S. , van Agen , E. and Van Sanden , S. 2005 . Vegetables affect the expression of genes involved in anticarcinogenic processes in the colonic mucosa of C57BL/6 female mice . J. Nutr. , 135 ( 8 ) : 1879 – 1888 .
  • Van Breda , S. , van Agen , E. and Van Sanden , S. 2005 . Vegetables affect the expression of genes involved in carcinogenic and anticarcinogenic processes in the lungs of female C57BL/6 mice . J. Nutr. , 135 ( 11 ) : 2546 – 2252 .
  • Van Sanden , S. and Burzykowski , T. 2006 . The use of background signal in the transformation of cDNA-microarray measurements . Appl. Bioinformatics , 5 ( 3 ) : 161 – 172 .
  • Wolfinger , R. D. , Gibson , G. and Wolfinger , E. D. 2001 . Assessing gene significance from cDNA microarray expression data via mixed models . J. Comput. Biol. , 8 : 625 – 637 .

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