Diversity, temporal distribution and physiology of the centric diatom Leptocylindrus Cleve (Bacillariophyta) from a southern hemisphere upwelling system

References

• Ajani, P.A., Allen, A.P., Ingleton, T. & Armand, L. 2014a. A decadal decline in relative abundance and a shift in microphytoplankton composition at a long-term coastal station off southeast Australia. Limnology and Oceanography 59: 519–531. doi: 10.4319/lo.2014.59.2.0519
   Web of Science ®Google Scholar
• Ajani, P.A., Allen, A.P., Ingleton, T. & Armand, L. 2014b. Erratum: a decadal decline in relative abundance and a shift in phytoplankton composition at a long-term coastal station off southeast Australia. Limnology and Oceanography 59: 2240–2242. doi: 10.4319/lo.2014.59.6.2240
   Web of Science ®Google Scholar
• Ajani, P., Hallegraeff, G., Allen, D., Coughlan, A., Richardson, A.J., Armand, L., Ingleton, T. & Murray, S.A. (in press). Establishing baselines: a review of eighty years of phytoplankton diversity and biomass in southeastern Australia. Oceanography Marine Biology Annual Review 54: 387–412.
   Google Scholar
• Ajani, P., Lee, R., Pritchard, T. & Krogh, M. 2001. Phytoplankton dynamics at a long-term coastal station off Sydney, Australia. Journal of Coastal Research 34: 60–73.
   Google Scholar
• Armbrecht, L.H., Roughan, M., Rossi, V., Schaeffer, A., Davies, P.L., Waite, A.M. & Armand, L.K. 2014. Phytoplankton composition under contrasting oceanographic conditions: upwelling and downwelling (Eastern Australia). Continental Shelf Research 75: 54–67. doi: 10.1016/j.csr.2013.11.024
   Web of Science ®Google Scholar
• Armbrecht, L.H., Schaeffer, A., Roughan, M. & Armand, L.K. 2015. Interactions between seasonality and oceanic forcing drive the phytoplankton variability in the tropical-temperate transition zone (similar to 30 degrees S) of Eastern Australia. Journal of Marine Systems 144: 92–106. doi: 10.1016/j.jmarsys.2014.11.008
   Web of Science ®Google Scholar
• Armbrecht, L.H., Thompson, P.A., Wright, S.W., Schaeffer, A., Roughan, M., Henderiks, J. & Armand, L.K. 2015. Comparison of the cross–shelf phytoplankton distribution of two oceanographically distinct regions off Australia. Journal of Marine Systems 148: 26–38. doi: 10.1016/j.jmarsys.2015.02.002
   Web of Science ®Google Scholar
• Armbrust, E.V. 2009. The life of diatoms in the world’s oceans. Nature 459: 185–192. doi: 10.1038/nature08057
   PubMed Web of Science ®Google Scholar
• Balloux, F. & Lugon-Moulin, N. 2002. The estimation of population differentiation with microsatellite markers. Molecular Ecology 11: 155–165. doi: 10.1046/j.0962-1083.2001.01436.x
   PubMed Web of Science ®Google Scholar
• Banks, S.C., Piggott, M.P., Williamson, J.E., Bove, U., Holbrook, N.J. & Beheregaray, L.B. 2007. Oceanic variability and coastal topography shape genetic structure in a long-dispersing sea urchin. Ecology 88: 3055–3064. doi: 10.1890/07-0091.1
   PubMed Web of Science ®Google Scholar
• Bowler, C., Vardi, A. & Allen, A.E. 2010. Oceanographic and biogeochemical insights from diatom genomes. Annual Review Marine Science 2: 333–365. doi: 10.1146/annurev-marine-120308-081051
   PubMed Web of Science ®Google Scholar
• Church, J.A. 1987. East Australian current adjacent to the Great Barrier Reef. Australian Journal of Marine and Freshwater Research 38: 671–683. doi: 10.1071/MF9870671
   Web of Science ®Google Scholar
• Cleve, P.T. 1889. Pelagisk Diatomeer från Kattegat. In: Det Videnskabelige Udbytte af Kanonbaaden ‘Hauchs’ Togter i de Danske Have Indefor Skagen, I. Aarene 1883–86 (Ed. by C.G.J. Petersen), pp. 53–56. Andr. Fred. Høst & Sons Forlag, Kjøbenhavn.
   Google Scholar
• Coleman, M.A., Roughan, M., Macdonald, H.S., Connell, S.D., Gillanders, B.M., Kelaher, B.P. & Steinberg, P.D. 2011. Variation in the strength of continental boundary currents determines continent-wide connectivity in kelp. Journal of Ecology 99: 1026–1032. doi: 10.1111/j.1365-2745.2011.01822.x
   Web of Science ®Google Scholar
• Dakin, W.J. & Colefax, A. 1933. The marine plankton of the coastal waters of New South Wales. 1. The chief planktonic forms and their seasonal distribution. Proceedings of the Linnean Society of New South Wales 58: 186–222.
   Google Scholar
• Davis, C.O., Hollibaugh, J.T., Seibert, D.L.R., Thomas, W.H. & Harrison, P.J. 1980. Formation of resting spores by Leptocylindrus danicus (Bacillariophyceae) in a controlled experimental ecosystem. Journal of Phycology 16: 296–302. doi: 10.1111/j.1529-8817.1980.tb03034.x
   Web of Science ®Google Scholar
• Edwards, K.F., Thomas, M.K., Klausmeier, C.A. & Litchman, E. 2015. Light and growth in marine phytoplankton: allometric, taxonomic, and environmental variation. Limnology and Oceanography 60: 540–552. doi: 10.1002/lno.10033
   Web of Science ®Google Scholar
• Falkowski, P.G. & Oliver, M.J. 2007. Mix and match: how climate selects phytoplankton. Nature Review Microbiology 5: 813–819. doi: 10.1038/nrmicro1751
   PubMed Web of Science ®Google Scholar
• Fawcett, S.E. & Ward, B.B. 2011. Phytoplankton succession and nitrogen utilization during the development of an upwelling bloom. Marine Ecology Progress Series 428: 13–31. doi: 10.3354/meps09070
   Web of Science ®Google Scholar
• French, F.W. & Hargraves, P.E. 1985. Spore formation in the life–cycles of the diatoms Chaetoceros diadema and Leptocylindrus danicus. Journal of Phycology 21: 477–483. doi: 10.1111/j.0022-3646.1985.00477.x
   Web of Science ®Google Scholar
• French, F.W. & Hargraves, P.E. 1986. Population-dynamics of the spore-forming diatom Leptocylindrus danicus in Narragansett Bay, Rhode Island. Journal of Phycology 22:411–420. doi: 10.1111/j.1529-8817.1986.tb02482.x
   Web of Science ®Google Scholar
• Godfrey, J.S., Cresswell, G.R., Golding, T.J., Pearce, A.F. & Boyd, R. 1980. The separation of the East Australian Current. Journal of Physical Oceanography 10: 430–440. doi: 10.1175/1520-0485(1980)010<0430:TSOTEA>2.0.CO;2
   Web of Science ®Google Scholar
• Gran, H.H. 1915. The Plankton production in the North European Waters in the spring of 1912. Bureau du Conseil permanent international pour l’exploration de la mer, Paris. 142 pp.
   Google Scholar
• Grant, B.R. & Kerr, J.D. 1970. Phytoplankton numbers and species at Port Hacking station and their relationship to the physical environment. Australian Journal of Marine and Freshwater Research 21: 35–45. doi: 10.1071/MF9700035
   Web of Science ®Google Scholar
• Guillard, R.R.L. 1975. Culture of phytoplankton for feeding marine invertebrates. In: Culture of marine invertebrate animals (Ed. by W.L. Smith & M.H. Chanley), pp. 26–60. Plenum Press, New York.
   Google Scholar
• Hallegraeff, G. M. 1981. Seasonal study of phytoplankton pigments and species at a coastal station off Sydney: Importance of diatoms and the nanoplankton. Marine Biology 61: 107–118. doi: 10.1007/BF00386650
   Web of Science ®Google Scholar
• Hallegraeff, G.M. & Reid, D.D. 1986. Phytoplankton species successions and their hydrological environment at a coastal station off Sydney. Australian Journal of Marine and Freshwater Research 37: 361–377. doi: 10.1071/MF9860361
   Web of Science ®Google Scholar
• Hargraves, P.E. 1976. Studies on marine plankton diatoms. 2. Resting spore morphology. Journal of Phycology 12: 118–128.
   Web of Science ®Google Scholar
• Hasle, G.R. & Fryxell, G.A. 1970. Diatoms: cleaning and mounting for light and electron microscopy. Transactions of the American Microscopy Society 89: 469–474. doi: 10.2307/3224555
   Google Scholar
• Huang, B.Q., Xiang, W.G., Zeng, X.B., Chiang, K.P., Tian, H.J., Hu, J., Lan, W.L. & Hong, H.S. 2011. Phytoplankton growth and microzooplankton grazing in a subtropical coastal upwelling system in the Taiwan Strait. Continental Shelf Research 31: S48–S56. doi: 10.1016/j.csr.2011.02.005
   Google Scholar
• Ichimi, K., Kawamura, T., Yamamoto, A., Tada, K. & Harrison, P.J. 2012. Extremely high growth rate of the small diatom Chaetoceros salsugineum isolated from an estuary in the eastern Seto Inland Sea, Japan. Journal of Phycology 48: 1284–1288. doi: 10.1111/j.1529-8817.2012.01185.x
   PubMed Web of Science ®Google Scholar
• Ishikawa, A., Kitami, S., Ishii, K., Nakamura, T. & Imai, I. 2011. Resting stage cells of diatoms in deep waters in Kumano-Nada, central part of Japan. Plankton and Benthos Research 6: 206–209. doi: 10.3800/pbr.6.206
   Google Scholar
• Ishizaka, J., Kaichi, M. & Takahashi, M. 1987. Resting spore formation of Leptocylindrus danicus (Bacillariophyceae) during short time-scale upwelling and its significance as predicted by a simple model. Ecological Research 2: 229–242. doi: 10.1007/BF02349776
   Google Scholar
• Jeffrey, S.W. & Carpenter, S.M. 1974. Seasonal succession of phytoplankton at a coastal station off Sydney. Australian Journal of Marine and Freshwater Research 25: 361–369. doi: 10.1071/MF9740361
   Web of Science ®Google Scholar
• Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., Buxton, S., Cooper, A., Markowitz, S., Duran, C., Thierer, T., Ashton, B., Meintjes, P. & Drummond, A. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28: 1647–1649. doi: 10.1093/bioinformatics/bts199
   PubMed Web of Science ®Google Scholar
• Koester, J.A., Swanson, W.J. & Armbrust, E.V. 2013. Positive selection within a diatom species acts on putative protein interactions and transcriptional regulation. Molecular Biology and Evolution 30: 422–434. doi: 10.1093/molbev/mss242
   PubMed Web of Science ®Google Scholar
• Lough, J.M. 2009. Temperature. In: A marine climate change impacts and adaptation report card for Australia 2009 (Ed. by E.S. Poloczanska, A.J. Hobday & A.J. Richardson), 24 pp, NCCARF Publication 05/09, ISBN 978-1-921609-03-9.
   Google Scholar
• Mcquoid, M.R. & Hobson, L.A. 1996. Diatom resting stages. Journal of Phycology 32: 889–902. doi: 10.1111/j.0022-3646.1996.00889.x
   Web of Science ®Google Scholar
• Morales, C.E. & Anabalon, V. 2012. Phytoplankton biomass and microbial abundances during the spring upwelling season in the coastal area off Concepcion, central-southern Chile: variability around a time series station. Progress in Oceanography 92–95: 81–91. doi: 10.1016/j.pocean.2011.07.004
   Web of Science ®Google Scholar
• Murray, S.A., Garby, T., Hoppenrath, M. & Neilan, B.A. 2012. Genetic diversity, morphological uniformity and polyketide production in dinoflagellates (Amphidinium, Dinoflagellata). PLoS ONE 7: e38253. doi: 10.1371/journal.pone.0038253
   PubMed Web of Science ®Google Scholar
• Nanjappa, D., Audic, S., Romac, S., Kooistra, W.H.C.F. & Zingone, A. 2014. Assessment of species diversity and distribution of an ancient diatom lineage using a DNA metabarcoding approach. PLoS ONE 9(8): e103810. doi: 10.1371/journal.pone.0103810.
   Google Scholar
• Nanjappa, D., D’ippolito, G., Gallo, C., Zingone, A. & Fontana, A. 2014. Oxylipin diversity in the diatom family Leptocylindraceae reveals DHA derivatives in marine diatoms. Marine Drugs 12: 368–384. doi: 10.3390/md12010368
   PubMed Web of Science ®Google Scholar
• Nanjappa, D., Kooistra, W.H.C.F. & Zingone, A. 2013. A reappraisal of the genus Leptocylindrus (Bacillariophyta), with the addition of three species and the erection of Tenuicylindrus gen. nov. Journal of Phycology 49: 917–936.
   PubMed Web of Science ®Google Scholar
• Richardson, A.J. & Poloczanska, E.S. 2008. Ocean science – under-resourced, under threat. Science 320: 1294–1295. doi: 10.1126/science.1156129
   PubMed Web of Science ®Google Scholar
• Ridgway, K.R. 2007 Long-term trend and decadal variability of the southward penetration of the East Australian Current. Geophysical Research Letters 34, L13613. doi: 10.1029/2007GL030393.
   Web of Science ®Google Scholar
• Ridgway, K.R. & Dunn, J.R. 2003. Mesoscale structure of the mean East Australian Current system and its relationship with topography. Progress in Oceanography 56: 189–222. doi: 10.1016/S0079-6611(03)00004-1
   Web of Science ®Google Scholar
• Ridgway, K.R. & Godfrey, J.S. 1997. Seasonal cycle of the East Australian Current. Journal of Geophysical Research – Oceans 102: 22921–22936. doi: 10.1029/97JC00227
   Web of Science ®Google Scholar
• Ridgway, K. & Hill, K. 2012. East Australian current. In: A marine climate change impacts and adaptation report card for Australia. (Ed. by E.S. Poloczanska, A.J. Hobday & A.J. Richardson), 13 pp, http://www.oceanclimatechange.org.au. ISBN: 978–0–643–10928–5.
   Google Scholar
• Ronquist, F. & Huelsenbeck, J. P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574. doi: 10.1093/bioinformatics/btg180
   PubMed Web of Science ®Google Scholar
• Snyder, M.A., Sloan, L.C., Diffenbaugh, N.S. & Bell, J.L. 2003. Future climate change and upwelling in the Californian Current. Geophysical Research Letters 30(15): 1823. doi: 10.1029/2003GL017647.
   Web of Science ®Google Scholar
• Stamatakis, A. 2006. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688–2690. doi: 10.1093/bioinformatics/btl446
   PubMed Web of Science ®Google Scholar
• Thompson, P.A., Baird, M.E., Ingleton, T. & Doblin, M.A. 2009. Long-term changes in temperate Australian coastal waters: implications for phytoplankton. Marine Ecology Progress Series 394: 1–19. doi: 10.3354/meps08297
   Web of Science ®Google Scholar
• Uitz, J., Claustre, H., Gentili, B. & Stramski, D. 2010. Phytoplankton class-specific primary production in the world's oceans: seasonal and interannual variability from satellite observations. Global Biogeochemical Cycles 24: GB3016. doi: 10.1029/2009GB003680.
   Web of Science ®Google Scholar
• Utermöhl, H. 1958. Zur Vervollkommnung der quantitativen Phytoplankton–Methodik. Mitteilung Internationale Vereinigung fuer Theoretische unde Amgewandte Limnologie 9: 1–38.
   Google Scholar
• Verity, P.G. 1982. Effects of temperature, irradiance, and daylength on the marine diatom Leptocylindrus danicus Cleve 4. Growth. Journal of Experimental Marine Biology and Ecology 60: 209–222. doi: 10.1016/0022-0981(82)90160-5
   Web of Science ®Google Scholar
• Zingone, A., Phlips, E.J. & Harrison, P.J. 2010. Multiscale variability of twenty–two coastal phytoplankton time series: a global scale comparison. Estuarine and Coasts 33: 224–229. doi: 10.1007/s12237-009-9261-x
   Web of Science ®Google Scholar