Multigene phylogeny and morphology of newly isolated strain of Pseudo-nitzschia mannii Amato & Montresor (Adriatic Sea)

References

• Alverson K. 2008. Sustained arctic observations: a legacy of the polar year. EOS, Transactions American Geophysical Union 89: 363–364. doi: 10.1029/2008EO390004
   Google Scholar
• Amato A., Kooistra W.H., Ghiron J.H., Mann D.G., Pröschold T. & Montresor M. 2007. Reproductive isolation among sympatric cryptic species in marine diatoms. Protist 158: 193–207. doi: 10.1016/j.protis.2006.10.001
   PubMed Web of Science ®Google Scholar
• Amato A. & Montresor M. 2008. Morphology, phylogeny, and sexual cycle of Pseudo-nitzschia mannii sp. nov. (Bacillariophyceae): a pseudo-cryptic species within the P. pseudodelicatissima complex. Phycologia 47: 487–497. doi: 10.2216/07-92.1
   Web of Science ®Google Scholar
• Drummond A.J. & Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214. doi: 10.1186/1471-2148-7-214
   PubMed Web of Science ®Google Scholar
• Guillard R.R.L. 1983. Culture of phytoplankton for feeding marine invertebrates. In: Culture of marine invertebrates selected readings (Ed. by C.J.J. Berg), pp. 108–132. Hutchinson Ross Publishing Co., Stroudsberg.
   Google Scholar
• Hall T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98.
   Google Scholar
• Kooistra W.H.C.F. & Medlin L.K. 1996. Evolution of the diatoms (Bacillariophyta). IV. A reconstruction of their age from small subunit rRNA coding regions and the fossil record. Molecular Phylogenetics and Evolutions 6: 391–407. doi: 10.1006/mpev.1996.0088
   PubMed Web of Science ®Google Scholar
• Larkin M.A., Blackshields G., Brown N.P., Chenna R., McGettigan P.A., McWilliam H., Valentin F., Wallace I.M., Wilm A., Lopez R., Thompson J.D., Gibson T.J. & Higgins D.G. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947–2948. doi: 10.1093/bioinformatics/btm404
   PubMed Web of Science ®Google Scholar
• Lim H.C., Lim P.T., Teng S.T., Bates S.S. & Leaw C.P. 2014. Genetic structure of Pseudo-nitzschia pungens (Bacillariophyceae) populations: implication of a global diversification of the diatom. Harmful Algae 37: 142–152. doi: 10.1016/j.hal.2014.06.004
   Web of Science ®Google Scholar
• Lim H.C., Teng S.T., Lim P.T., Wolf M. & Pin Leaw C. 2016. 18S rDNA phylogeny of Pseudo-nitzschia (Bacillariophyceae) inferred from sequence-structure information. Phycologia 55: 134–146. doi: 10.2216/15-78.1
   Web of Science ®Google Scholar
• Ljubešić Z., Bosak S., Viličić D., Borojević Kralj K., Marić D., Godrijan J., Ujević I., Peharec P. & Dakovac T. 2011. Ecology and taxonomy of potentially toxic Pseudo-nitzschia species in Lim Bay (north-eastern Adriatic Sea). Harmful Algae 10: 713–722. doi: 10.1016/j.hal.2011.06.002
   Web of Science ®Google Scholar
• Lundholm N., Bates S.S., Baugh K.A., Bill B.D., Connell L.B., Leger C. & Trainer V.L. 2012. Cryptic and pseudo-cryptic diversity in diatoms – with descriptions of Pseudo-nitzschia hasleana sp. nov. and P. fryxelliana sp. nov. Journal of Phycology 48: 436–454. doi: 10.1111/j.1529-8817.2012.01132.x
   PubMed Web of Science ®Google Scholar
• Lundholm N., Daugbuerg N. & Moestrup Ø. 2002. Phylogeny of the Bacillariaceae with emphasis on the genus Pseudo-nitzschia (Bacillariophyceae) based on partial LSU rDNA. European Journal of Phycology 37: 115–134. doi: 10.1017/S096702620100347X
   Web of Science ®Google Scholar
• Lundholm N., Moestrup Ø., Hasle G.R. & Hoef-Emden K. 2003. A study of the Pseudo-nitzschia pseudodelicatissima/cuspidata complex (Bacillariophyceae): What is P. pseudodelicatissima? Journal of Phycology 39: 797–813. doi: 10.1046/j.1529-8817.2003.02031.x
   Web of Science ®Google Scholar
• Medlin L.K., Jung I., Bahulikar R., Mendgen K., Kroth P. & Kooistra W.H.C.F. 2008. Evolution of the diatoms. VI. Assessment of the new genera in the araphids using molecular data. Nova Hedwigia 133: 81–100.
   Google Scholar
• Medlin L.K., Kooistra W.H.C.F., Gersonde R. & Wellbrock U. 1996. Evolution of the diatoms (Bacillariophyta). II. Nuclear-encoded small-subunit rRNA sequence comparisons confirm a paraphyletic origin for the centric diatoms. Molecular Biology and Evolution 13: 67–75. doi: 10.1093/oxfordjournals.molbev.a025571
   PubMed Web of Science ®Google Scholar
• Medlin L.K., Williams D.M. & Sims P.A. 1993. The evolution of the diatoms (Bacillariophyta). I. Origin of the group and assessment of the monophyly of its major divisions. European Journal of Phycology 28: 261–275. doi: 10.1080/09670269300650381
   Web of Science ®Google Scholar
• Moniz M. & Kaczmarska I. 2010. Barcoding of diatoms: nuclear encoded ITS revisited. Protist 161: 7–34. doi: 10.1016/j.protis.2009.07.001
   PubMed Web of Science ®Google Scholar
• Moschandreou K.K., Papaefthimiou D., Katikou P., Kalopesa E., Panou A. & Nikolaidis, G. 2010. Morphology, phylogeny and toxin analysis of Pseudo-nitzschia pseudodelicatissima (Bacillariophyceae) isolated from the Thermaikos Gulf, Greece. Phycologia 49(3): 260–273.
   Google Scholar
• Nei M. & Kumar S. 2000. Molecular evolution and phylogenetics. Oxford University Press, New York.
   Google Scholar
• Quijano-Scheggia S., Garcés E., Andree K.B., DE LA IGLESIA P., Diogéne J., Fortuño J.M. & Camp J. 2010. Pseudo-nitzschia species on the Catalan coast: characterization and contribution to the current knowledge of the distribution of this genus in the Mediterranean Sea. Scientia Marina 74(2): 395–410.
   Google Scholar
• Ronquist F. & Huelsenbeck J.P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574. doi: 10.1093/bioinformatics/btg180
   PubMed Web of Science ®Google Scholar
• Sorhannus U. 1997. The origination time of diatoms; an analysis based on ribosomal RNA data. Micropaleontology 43: 215–218. doi: 10.2307/1485785
   Web of Science ®Google Scholar
• Sorhannus U. 2007. A nuclear-encoded small-subunit ribosomal RNA timescale for diatom evolution. Marine Micropaleontology 65: 1–12. doi: 10.1016/j.marmicro.2007.05.002
   Web of Science ®Google Scholar
• Tamura K., Stecher G., Peterson D., Filipsk A. & Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 30: 2725–2729. doi: 10.1093/molbev/mst197
   PubMed Web of Science ®Google Scholar
• Tan S.N., Lim H.C., Teng S.T., Lim P.T. & Leaw C.P. 2015. Pseudo-nitzschia species (Bacillariophyceae) identification and delineation using mitochondrial cox1 gene sequences as compared to LSU rDNA. Fisheries Science 81: 831–838. doi: 10.1007/s12562-015-0902-7
   Web of Science ®Google Scholar
• Theriot E.C., Cannone J.J., Gutell R.R. & Alverson A.J. 2009. The limits of nuclear-encoded SSU rDNA for resolving the diatom phylogeny. European Journal of Phycology 44: 277–290. doi: 10.1080/09670260902749159
   PubMed Web of Science ®Google Scholar
• Zhang H., Bhattacharya D. & Lin S. 2007. A three-gene dinoflagellate phylogeny suggest monophyly of Prorocentrales and a basal position for Amphidinium and Heterocapsa. Journal of Molecular Evolution 65: 463–474. doi: 10.1007/s00239-007-9038-4
   PubMed Web of Science ®Google Scholar
• Zimmermann C., Chymkowitch P., Eldholm V., Putnamc D., Lindvallj M., Omerzu M., Bjoras M., Kolodnerr D. & Enserink J.M. 2011. A chemical-genetic screen to unravel the genetic network of CDC28/CDK1 links ubiquitin and Rad6-Bre1 to cell cycle progression. Proceedings of the National Academy of Sciences 46: 18748–18753. doi: 10.1073/pnas.1115885108
   Web of Science ®Google Scholar