New observations on the large hemidiscoid diatom Palmerina ostenfeldii and its symbiotic ciliate Vaginicola collariforma sp. nov. from subtropical Australian waters

References

• Allen W.E. & Cupp E.E. 1935. Plankton diatoms of the Java Sea. Annals Jardin Botanique Buitenzorg 44: 1–174.
   Google Scholar
• Alverson A.J., Jansen R.K. & Theriot E.C. 2007. Bridging the Rubicon: phylogenetic analysis reveals repeated colonizations of marine and fresh waters by thalassiosiroid diatoms. Molecular Phylogenetics and Evolution 45: 193–210. doi: https://doi.org/10.1016/j.ympev.2007.03.024
   PubMed Web of Science ®Google Scholar
• Bernhart S.H., Hofacker I.L., Will S., Gruber A.R. & Stadler P.F. 2008. RNAalifold: improved consensus structure prediction for RNA alignments. BMC Bioinformatics 9: 474. doi:https://doi.org/10.1186/1471-2105-9-474
   PubMed Web of Science ®Google Scholar
• Curds C.R., Gates M.A. & McL Roberts D. 1983. British and other freshwater ciliated protozoa Part II Ciliophora: Oligohymenophora and Polyhymenophora. Cambridge University Press, Cambridge.
   Google Scholar
• De Faria J.G. & Da Cunha A.M. 1917. Estudos sobre o microplancton d Baía do Rio de Janeiro e suas imedições. Memoirs Instituto Oswaldo Cruz 9: 68–93. doi: https://doi.org/10.1590/S0074-02761917000100003
   Google Scholar
• Delsman H.C. 1939. Preliminary plankton investigations in the Java Sea. Treubia 17: 139–181.
   Google Scholar
• Elwood H. J., Olsen G. J. & Sogin M. L. 1985.The small subunit RNA gene sequences from the hypotrichous ciliates Oxytricha nova and Stylonychia pustulata. Journal Molecular Biology Evolution 2: 399–410.
   PubMed Web of Science ®Google Scholar
• Eriksen R.S., Davies C.H., Bonham P., Coman F.E., Edgar S., Mcennulty F., Mcleod D., Miller M.J., Rochester W., Slotwinski A., Tonks M.L., Uribe-Palomino J. & Richardson A.J. 2019. Australia’s long-term plankton observations: the Integrated Marine Observing System National Reference Station network. Frontiers in Marine Science 6: 1–17. doi: https://doi.org/10.3389/fmars.2019.00161
   Google Scholar
• Froneman P.W., Pakhomov E.A. & Meaton V. 1998 Observations on the association between the diatom Fragilariopsis doliolus Wallich, and the tintinnid, Salpingella subconica Kofoid. South African Journal of Science 94: 202.
   Web of Science ®Google Scholar
• Gárate-Lizárraga I. & Muñetón-Gómez M.D.S. 2009. Primer registro de la diatomea epibionte Pseudohimantidium pacificum y de otras asociaciones simbióticas en el Golfo de California. Acta Botanica Mexicana 88: 31–45. doi: https://doi.org/10.21829/abm88.2009.311
   Google Scholar
• Garcia M. & Odebrecht C. 2008. Morphology and ecology of the planktonic diatom Palmerina hardmaniana (Greville) Hasle in Southern Brazil. Biota Neotropica 8: 87–92. doi: https://doi.org/10.1590/S1676-06032008000200009
   Google Scholar
• Gómez F. 2007. On the consortium of the tintinnid Eutintinnus and the diatom Chaetoceros in the Pacific Ocean. Marine Biology 151: 1899–1906. doi: https://doi.org/10.1007/s00227-007-0625-0
   Web of Science ®Google Scholar
• Gómez F. 2020. Symbiosis of ciliates (Ciliophora) and diatoms (Bacillariophyceae): Taxonomy and host-symbiont interactions. Oceans 1: 133–155. doi: https://doi.org/10.3390/oceans1030010
   Google Scholar
• Gómez F., Wang L. & Lin S. 2018. Morphology and molecular phylogeny of peritrich ciliate epibionts on pelagic diatoms: Vorticella oceanica and Pseudovorticella coscinodisci sp.nov. (Ciliophora, Peritrichia). Protist 169: 268–279. doi: https://doi.org/10.1016/j.protis.2018.03.003
   PubMed Web of Science ®Google Scholar
• Greville R.K. 1865. Descriptions of new genera and species of diatoms from Hong Kong. Annals and Magazine of Natural History 3rd series 16: 1–7. doi: https://doi.org/10.1080/00222936508679366
   Google Scholar
• Hallegraeff G.M. & Jeffrey S.W. 1984. Tropical phytoplankton species and pigments of continental shelf waters of north and north-west Australia. Marine Ecology Progress Series 20: 59–74. doi: https://doi.org/10.3354/meps020059
   Web of Science ®Google Scholar
• Hasle G.R. 1995. Nomenclatural notes on Palmerina nom. nov.: Pseudo-nitzschia turgiduloides sp. nov. Diatom Research 10: 357–358. doi: https://doi.org/10.1080/0269249X.1995.9705356
   Google Scholar
• Hasle G.R. & Syvertsen E.E. 1997. Marine diatoms. In: Identifying Marine Diatoms and Dinoflagellates (Ed. by C.R. Tomas), pp. 5–385. Academic Press, San Diego.
   Google Scholar
• Heil C.A., O’Donohue M.J., Miller C.A. & Dennison W.C. 1998. Phytoplankton community Response to a Flood Event. In: Moreton Bay and Catchment. School of Marine Science (Ed. by I.R. Tibbetts, N.J. Hall, W.C. Dennison), pp 569–584. University of Queensland, Brisbane.
   Google Scholar
• Hensen, V. 1890. Einige Ergebnisse der Plankton-Expedition der Humboldt-Stiftung. Sitznungsberichte der Berliner Akademie der Wissenschaften von 13. Marz 1890, pp. 243–253.
   Google Scholar
• Kaczmarska I., Beaton M., Benoit A.C. & Medlin L.K. 2006. Molecular phylogeny of selected members of the order Thalassiosirales (Bacillariophyta) and evolution of the fultoportula. Journal of Phycology 42: 121–138. doi: https://doi.org/10.1111/j.1529-8817.2006.00161.x
   Web of Science ®Google Scholar
• Katoh K. & Standley D.M. 2016. A simple method to control over-alignment in the MAFFT multiple sequence alignment program. Bioinformatics (Oxford, England), 32: 1933–1942. doi: https://doi.org/10.1093/bioinformatics/btw108
   PubMed Web of Science ®Google Scholar
• Mann A. 1907 Report on the diatoms of the Albatross voyages in the Pacific Ocean, 1888-1904. Contributions US National Herbarium 10: 221–442.
   Google Scholar
• Müller O.F. 1786. Animalcula Infusoria Fluviatilia et Marina. Nicholas Möller, Copenhagen.
   Google Scholar
• Nagasawa E. & Warren A. 1996. Redescription of Vorticella oceanica Zacharias, 1906 (Ciliophora: Peritrichia) with notes on its host, the marine planktonic diatom Chaetoceros coarctatum Lauder, 1864. Hydrobiologia 337: 27–36. doi: https://doi.org/10.1007/BF00028504
   Web of Science ®Google Scholar
• Navarro J.N. 1981. A Survey of the Marine Diatoms of Puerto Rico. I. Suborders Coscinodiscineae and Rhizosoleniineae. Botanica Marina 24: 427–439. doi: https://doi.org/10.1515/botm.1981.24.8.427
   Web of Science ®Google Scholar
• Ostenfeld C.H. 1901. Phytoplankton fra det Kaspiske Hav. Vidensk. Meddel. Dansk Naturhist. Foren. Kjobenhavn 1901: 129–139.
   Google Scholar
• Ostenfeld C.H. 1903. Marine plankton Diatoms. In: Flora of the Koh Chang. Contributions to the knowledge of the vegetation in the Gulf of Siam (Ed. by J. Schmidt), vol. 25, pp. 219–245. Botaniske Tidsskrift, Copenhagen.
   Google Scholar
• Ostenfeld C.H. 1916. De Danske Farvandes Plankton i Aarene 1898-1901. Phytoplankton og Protozoer, 2. Protozoer; Organismer med usikker stilling: parasiter i phytoplankter. Det Kongelige Danske Videnskabernes Selskabs skrifter Naturvidenskabelig og Mathematisk Afdeling 8: 1–85.
   Google Scholar
• R Core Team 2020. R: A language and environment ofr statistical computing. R Foundation for Statistical Computing. Vienna, Australia. Available from: https://www.R-project.org/.
   Google Scholar
• Round F.E., Crawford R.M. & Mann D.G. 1990. The Diatoms. Biology and Morphology of the Genera. Cambridge University Press, Cambridge.
   Google Scholar
• Simonsen R. 1972. Uber die Diatomeengattung Hemidiscus Wallich und andere Angehörige der sogenannten “Hemidiscaceae”. Veröffentlichungen des Instituts fur Meeresforschung in Bremerhaven 13:265–273.
   Google Scholar
• Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post analysis of large phylogenies. Bioinformatics (Oxford, England) 30: 1312–1313. doi: https://doi.org/10.1093/bioinformatics/btu033
   PubMed Web of Science ®Google Scholar
• Sun P., Clamp J., Xu D., Huang B & Shin M.K. 2016. An integrative approach to phylogeny reveals patterns of environmental distribution and novel evolutionary relationships in a major group of ciliates. Nature Scientific Reports 6: 1–12.
   Web of Science ®Google Scholar
• Sundström B.G. 1984. Observations on Rhizosolenia clevei Ostenfeld (Bacillariophyceae) and Richelia intracellularis Schmidt (Cyanophyceae). Botanica Marina 27: 345–355. doi: https://doi.org/10.1515/botm.1984.27.8.345
   Web of Science ®Google Scholar
• Taylor F.J.R.1982. Symbiosis in marine microplankton. Annals Institut Oceanographique 58: 61–90.
   Web of Science ®Google Scholar
• Theriot E.C., Ashworth M., Ruck E., Nakov T. & Jansen R.K. 2010. A preliminary multigene phylogeny of the diatoms (Bacillariophyta): challenges for future research. Plant Ecology and Evolution 143: 278–296. doi: https://doi.org/10.5091/plecevo.2010.418
   Web of Science ®Google Scholar
• von Stosch H.A. 1986. Some marine diatoms from the Australian region, especially from Port Phillip Bay and Tropical North-eastern Australia. Survey of the genus Palmeria and of the family Lithodesmiaceae including the new genus Lithodesmioides. Brunonia 9: 29–87. doi: https://doi.org/10.1071/BRU9860029
   Google Scholar
• Zhuang Y., Clamp J.C., Yi Z. & Ji D. 2016. A new peritrich ciliate from a hypersaline habitat in Northern China. Zootaxa 4169: 179–186. doi: https://doi.org/10.11646/zootaxa.4169.1.10
   PubMed Web of Science ®Google Scholar