Use of a Parsimony Algorithm As a Method for Evaluating Ichthyofaunal Distribution and Co-occurrence in an Urban Stream

LITERATURE CITED

• Able , K. W. , Smith , K. J. and Hagan , S. M. 2005 . Fish composition and abundance in New Jersey salt marsh pools: sampling technique effects . Northeastern Naturalist , 12 : 485 – 502 .
   Web of Science ®Google Scholar
• Aguilar-Aguilar , R. , Contreras-Medina , R. and Salgado-Maldonado , G. 2003 . Parsimony analysis of endemicity (PAE) of Mexican hydrological basins based on helminth parasites of freshwater fishes . Journal of Biogeography , 30 : 1861 – 1872 .
   Web of Science ®Google Scholar
• Angermeier , P. L. and Winston , M. R. 1999 . Characterizing fish community diversity across Virginia landscapes: prerequisite for conservation . Ecological Applications , 9 : 335 – 349 .
   Web of Science ®Google Scholar
• Brazner , J. C. and Beals , E. W. 1997 . Patterns in fish assemblages from wetland and beach habitats in Green Bay, Lake Michigan: a multivariate analysis of abiotic and biotic forcing factors . Canadian Journal of Fisheries and Aquatic Sciences , 54 : 1743 – 1761 .
   Web of Science ®Google Scholar
• Brooks , D. R. 1990 . Parsimony analysis in historical biogeography and coevolution: methodological and theoretical update . Systematic Zoology , 39 : 14 – 30 .
   Google Scholar
• Brooks , D. R. , van Veller , M. G.P. and McLennan , D. A. 2001 . How to do BPA, really . Journal of Biogeography , 28 : 345 – 358 .
   Web of Science ®Google Scholar
• Choudhury , A. and Dick , T. A. 1998 . The historical biogeography of sturgeons (Osteichthyes: Acipenseridae): a synthesis of phylogenetics, palaeontology and palaeogeography . Journal of Biogeography , 25 : 623 – 640 .
   Web of Science ®Google Scholar
• Crisci , J. , Katinas , L. and Posadas , P. 2003 . Historical biogeography: an Introduction. Cambridge, MA: Harvard University Press .
   Google Scholar
• Farris , J. S. 1970 . Methods for computing Wagner trees . Systematic Zoology , 19 : 83 – 92 .
   Google Scholar
• Farris , J. S. 1979 . The information content of the phylogenetic system . Systematic Zoology , 28 : 483 – 519 .
   Google Scholar
• Finger , T. R. 1982 . Fish community-habitat relations in a central New York stream . Journal of Freshwater Ecology , 1 : 343 – 352 .
   Web of Science ®Google Scholar
• Gauch , H. G. Jr. 1982 . Multivariate analysis in community ecology New York : Cambridge University Press .
   Google Scholar
• Gerhard , P. , Moraes , R. and Molander , S. 2004 . Stream fish communities and their associations to habitat variables in a rain forest reserve in southeastern Brazil . Environmental Biology of Fishes , 71 : 321 – 340 .
   Web of Science ®Google Scholar
• Goloboff , P. A. 1993a . NONA, Version 2. Published by the author, Tucuman, Argentina.
   Google Scholar
• Goloboff , P. A. 1993b . Estimating character weights during tree search . Cladistics , 9 : 83 – 91 .
   PubMed Web of Science ®Google Scholar
• Goloboff , P. A. 1993c . Character optimization and calculation of tree lengths . Cladistics , 9 : 433 – 436 .
   PubMed Web of Science ®Google Scholar
• Goloboff , P. A. 1996 . Methods for faster parsimony analysis . Cladistics , 12 : 199 – 220 .
   PubMed Web of Science ®Google Scholar
• Harrison , T. D. and Whitfield , A. K. 2006 . Estuarine typology and the structuring of fish communities in South Africa . Environmental Biology of Fishes , 75 : 269 – 293 .
   Web of Science ®Google Scholar
• Hawkes , C. L. , Miller , D. L. and Layher , W. G. 1986 . Fish ecoregions of Kansas: stream fish assemblage patterns and associated environmental correlates . Environmental Biology of Fishes , 17 : 267 – 279 .
   Web of Science ®Google Scholar
• Hughes , R. M. , Rextad , E. and Bond , C. E. 1987 . The relationship of aquatic ecoregions, river basins and physiographic provinces to the ichthyogeographic regions of Oregon . Copeia , 1987 : 423 – 432 .
   Google Scholar
• Huibobro , L. , Morrone , J. J. , Villalobos , J. L. and Alvarez , F. 2006 . Distributional patterns of freshwater taxa (fishes, crustaceans and plants) from the Mexican Transition Zone . Journal of Biogeography , 33 : 731 – 741 .
   Web of Science ®Google Scholar
• Jackson , D. A. and Harvey , H. H. 1989 . Biogeographic associations in fish assemblages: local vs. regional processes . Ecology , 70 : 1472 – 1484 .
   Web of Science ®Google Scholar
• Legendre , P. and Legendre , L. 1998 . Numerical ecology Amsterdam : Elsevier Science . 2nd (English) edition
   Google Scholar
• Li , R. Y. and Gelwick , F. P. 2005 . The relationship of environmental factors to spatial and temporal variation of fish assemblages in a floodplain river in Texas, USA . Ecology of Freshwater fish , 14 : 319 – 330 .
   Web of Science ®Google Scholar
• Manly , B. F.J. 2005 . Multivariate statistical methods: a primer, , 3rd edition Florida : Chapman and Hall/CRC .
   Google Scholar
• Manly , B. F.J. 2007 . Randomization. bootstrap and Monte Carlo methods in biology., , 3rd edition Florida : Chapman and Hall/CRC .
   Google Scholar
• Matthews , M. J. and Robison , H. W. 1988 . The distribution of the fishes of Arkansas: a multivariate analysis . Copeia , 1988 : 358 – 374 .
   Google Scholar
• McCune , B. and Grace , J. B. 2002 . Analysis of ecological communities. MJM Software Design, Gleneden Beach, Oregon, U.S.A.
   Google Scholar
• McCune , B. and Mefford , M. J. 2006 . PC-ORD. Multivariate analysis of ecological data. Version 5. MJM Software, Gleneden Beach, Oregon, U.S.A.
   Google Scholar
• Nixon , K. C. 2002 . WinClada, Version 1.00.08. Published by the author, Ithaca, New York.
   Google Scholar
• Pielou , E. C. 1984 . The interpretation of ecological data: a primer on classification and ordination New York : John Wiley and Sons .
   Google Scholar
• Poff , N. L. and Allan , J. D. 1995 . Functional organization of stream fish assemblages in relation to hydrological variability . Ecology , 76 : 606 – 627 .
   Web of Science ®Google Scholar
• Rachlin , J. W. , Warkentine , B. E. and Pappantoniou , A. 2007 . An evaluation of the ichthyofauna of the Bronx River. a resilient urban waterway . Northeastern Naturalist. , (In Press)
   Web of Science ®Google Scholar
• Rosen , D. E. 1978 . Vicariant patterns and historical explanation in biogeography . Systematic Zoology , 27 : 159 – 188 .
   Google Scholar
• Rubinstein , R. Y. 1981 . Simulation of the Monte Carlo method New York : John Wiley and Sons .
   Google Scholar
• Rundle , S. D. , Bilton , D. T. and Shiozawa , D. K. 2000 . Global and regional patterns in lotic meiofauna . Freshwater Biology , 44 : 123 – 134 .
   Web of Science ®Google Scholar
• Samaritan , J. M. and Schmidt , R. E. 1982 . Aspects of the life history of a freshwater population of the mummichog, Fundulus heteroclitus (Pisces: Cyprinodontidae), in the Bronx River, New York . U.S.A. Hydrobiologia , 94 : 149 – 154 .
   Web of Science ®Google Scholar
• Santoul , F. , Cayrou , J. , Mastrorillo , S. and Céréghino , R. 2005 . Spatial patterns of the biological traits of freshwater fish communities in south-west France . Journal of Fish Biology , 66 : 301 – 314 . doi: 10.1111/j.1095–8649.2004.00579.x
   Web of Science ®Google Scholar
• Schmidt , R. E. and Samaritan , J. M. 1984 . Fishes of an urban stream; The Bronx River . New York. Northeastern Environmental Science , 3 : 3 – 7 .
   Google Scholar
• Sheldon , A. L. 1968 . Species diversity and longitudinal succession in stream fishes . Ecology , 49 : 193 – 198 .
   Web of Science ®Google Scholar
• Tonn , W. M. and Magnuson , J. J. 1982 . Patterns in the species composition and richness of fish assemblages in northern Wisconsin lakes . Ecology , 63 : 1149 – 1166 .
   Web of Science ®Google Scholar
• Wiley , E. O. 1988 . Vicariance biogeography . Annual Review of Ecology and Systematics , 19 : 513 – 542 .
   Google Scholar