Hybridization between Yellowstone Cutthroat Trout and Rainbow Trout in the Upper Snake River Basin, Wyoming

REFERENCES

• Allendorf , F. W. and Leary , R. F. 1988 . Conservation and distribution of genetic variation in a polytypic: the cutthroat trout . Conservation Biology , 2 : 170 – 184 .
   Google Scholar
• Allendorf , F. W. , Leary , R. F. , Hitt , N. P. , Knudsen , K. L. , Lundquist , L. L. and Spruell , P. 2004 . Intercrosses and the U.S. Endangered Species Act: should hybridized populations be included as westslope cutthroat trout? . Conservation Biology , 18 : 1203 – 1213 .
   Web of Science ®Google Scholar
• Allendorf , F. W. , Leary , R. F. , Spruell , P. and Wenburg , J. K. 2001 . The problems with hybrids: setting conservation guidelines . Trends in Ecology and Evolution , 16 : 613 – 622 .
   Web of Science ®Google Scholar
• Allendorf , F. W. and Luikart , G. 2007 . Conservation and the genetics of populations , Malden , Massachusetts : Blackwell Scientific Publications .
   Google Scholar
• Behnke , R. J. 1992 . Native trout of western North America , Bethesda , Maryland : American Fisheries Society, Monograph 6 .
   Google Scholar
• Bennett , S. N. , Olson , J. R. , Kershner , J. L. and Corbett , P. 2010 . Propagule pressure and stream characteristics influence introgression: cutthroat and rainbow trout in British Columbia . Ecological Applications , 20 : 263 – 277 .
   PubMed Web of Science ®Google Scholar
• Boyer , M. C. , Muhlfeld , C. C. and Allendorf , F. W. 2008 . Rainbow trout (Oncorhynchus mykiss) invasion and the spread of hybridization with native westslope cutthroat trout (Oncorhynchus clarkii lewisi) . Canadian Journal of Fisheries and Aquatic Sciences , 65 : 658 – 669 .
   Web of Science ®Google Scholar
• Cairney , M. J. , Taggart , B. and Hoyheim , B. 2000 . Characterization of microsatellite and minisatellite in Atlantic salmon (Salmo salar L.) and cross species amplification in other species . Molecular Ecology , 9 : 2155 – 2234 .
   PubMed Web of Science ®Google Scholar
• Cegelski , C. C. , Campbell , M. R. , Meyer , K. A. and Powell , M. S. 2006 . Multiscale genetic structure of Yellowstone cutthroat trout in the upper Snake River basin . Transactions of the American Fisheries Society , 135 : 711 – 726 .
   Web of Science ®Google Scholar
• DeRito , J. N. , Zale , A. V. and Shepard , B. B. 2010 . Temporal reproductive separation of fluvial Yellowstone cutthroat trout from rainbow trout and hybrids in the Yellowstone River . North American Journal of Fisheries Management , 30 : 866 – 886 .
   Web of Science ®Google Scholar
• Epifanio , J. G. , Haas, Pratt , K. , Rieman , B. , Spruell , P. , Stockwell , C. , Utter , F. and Young , W. 2003 . Integrating conservation genetic considerations into conservation planning: a case study of bull trout in the Lake Pend Oreille—lower Clark Fork river system . Fisheries , 28 ( 8 ) : 10 – 24 .
   Web of Science ®Google Scholar
• Gharrett , A. J. , Smoker , W. W. , Reisenbichler , R. R. and Taylor , S. G. 1999 . Outbreeding depression in hybrids between odd- and even-broodyear pink salmon . Aquaculture , 173 : 117 – 129 .
   Web of Science ®Google Scholar
• Gilk , S. E. , Wang , I. A. , Hoover , C. L. , Smoker , W. W. , Taylor , S. G. , Gray , A. K. and Gharrett , A. J. 2004 . Outbreeding depression in hybrids between spatially separated pink salmon, Oncorhynchus gorbuscha, populations: marine survival, homing ability, and variability in family size . Environmental Biology of Fishes , 69 : 287 – 297 .
   Web of Science ®Google Scholar
• Goudet , J. 2001 . FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3) . Available: www.unil.ch/izea/softwares/fstat.html
   Google Scholar
• Gregory , J. S. and Yates , S. B. 2009 . Trout movement in the Gros Ventre River and access to the Snake River . Gregory Aquatics, draft report, Mackay, Idaho to Trout Unlimited, Lander, Wyoming
   Google Scholar
• Gunnell , K. , Tada , M. K. , Hawthorne , F. A. , Keeley , E. R. and Ptacek , M. B. 2008 . Geographic patterns of introgressive hybridization between native Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) and introduced rainbow trout (O. mykiss) in the south fork of the Snake River watershed, Idaho . Conservation Genetics , 9 : 49 – 64 .
   Web of Science ®Google Scholar
• Henderson , R. , Kershner , J. L. and Toline , C. A. 2000 . Timing and location of spawning by nonnative wild rainbow trout and native cutthroat trout in the south fork of the Snake River, Idaho, with implications for hybridization . North American Journal of Fisheries Management , 20 : 584 – 596 .
   Google Scholar
• Hitt , N. P. , Frissell , C. A. , Muhlfeld , C. C. and Allendorf , F. W. 2003 . Spread of hybridization between native westslope cutthroat trout Oncorhynchus clarki lewisi, and nonnative rainbow trout Oncorhynchus mykiss . Canadian Journal of Fisheries and Aquatic Sciences , 60 : 1440 – 1451 .
   Web of Science ®Google Scholar
• Holm , L. E. and Brusgaard , K. 1998 . Two polymorphic dinucleotide repeats in rainbow trout (Oncorhynchus mykiss) . Animal Genetics , 30 : 162 – 163 .
   Web of Science ®Google Scholar
• Jiggins , C. D. and Mallett , J. 2000 . Bimodal hybrid zones and speciation . Trends in Ecology and Evolution , 15 : 250 – 255 .
   PubMed Web of Science ®Google Scholar
• Kiefling , J. W. 1973 . Habitat evaluation of the Snake River and tributary streams. Part I Gros Ventre River habitat evaluation , Wyoming Game and Fish Commission . Cooperative Research Project 4, Segment 6, Job 2, F-37-R-6
   Google Scholar
• Kiefling , J. W. 1978 . Studies on the ecology of the Snake River cutthroat trout . Wyoming Game and Fish Commission, Technical Bulletin 3, Cheyenne
   Google Scholar
• Kruse , C. G. , Hubert , W. A. and Rahel , F. J. 2000 . Status of Yellowstone cutthroat trout in Wyoming waters . North American Journal of Fisheries Management , 20 : 693 – 705 .
   Google Scholar
• Lowe , W. H. and Allendorf , F. A. 2010 . What can genetics tell us about population connectivity? . Molecular Ecology , 19 : 3038 – 3051 .
   PubMed Web of Science ®Google Scholar
• Metcalf , J. L. , Pritchard , V. L. , Silvestri , S. M. , Jenkins , J. B. , Wood , J. S. , Cowley , D. E. , Evans , R. P. , Shiozawa , D. K. and Martin , A. P. 2007 . Across the great divide: genetic forensics reveals misidentification of endangered cutthroat trout populations . Molecular Ecology , 16 : 4445 – 4454 .
   PubMed Web of Science ®Google Scholar
• Muhlfeld , C. C. , Kalinowski , S. T. , McMahon , T. E. , Taper , M. L. , Painter , S. , Leary , R. F. and Allendorf , F. W. 2009a . Hybridization rapidly reduces fitness of a native trout in the wild . Biology Letters , 5 : 328 – 331 .
   PubMed Web of Science ®Google Scholar
• Muhlfeld , C. C. , McMahon , T. E. , Belcer , D. and Kershner , J. L. 2009b . Spatial and temporal spawning dynamics of native westslope cutthroat trout, Oncorhynchus clarkii lewisi, introduced rainbow trout, Oncorhynchus mykiss, and their hybrids . Canadian Journal of Fisheries and Aquatic Sciences , 66 : 1153 – 1168 .
   Web of Science ®Google Scholar
• Muhlfeld , C. C. , McMahon , T. E. , Boyer , M. C. and Gresswell , R. E. 2009c . Local habitat, watershed and biotic factors influencing the spread of hybridization between native westslope cutthroat trout and introduced rainbow trout . Transactions of the American Fisheries Society , 138 : 1036 – 1051 .
   Web of Science ®Google Scholar
• Nelson , R. J. and Beacham , T. D. 1999 . Isolation and cross species amplification of microsatellite loci useful for study of Pacific salmon . Animal Genetics , 33 : 228 – 229 .
   Web of Science ®Google Scholar
• Neville , H. M. , Dunham , J. B. and Peacock , M. M. 2006 . Landscape attributes and life history variability shape genetic structure of trout populations in a stream network . Landscape Ecology , 21 : 901 – 916 .
   Web of Science ®Google Scholar
• Novak , M. A. , Kershner , J. L. and Mock , K. E. 2005 . Molecular genetic investigation of Yellowstone cutthroat trout and fine-spotted Snake River cutthroat trout , Wyoming Game and Fish Commission . Report in Partial Fulfillment of Agreement Number 165/04, Cheyenne
   Google Scholar
• Olden , J. D. , Poff , N. L. , Douglas , M. R. , Douglas , M. E. and Fausch , K. D. 2004 . Ecological and evolutionary consequences of biotic homogenization . Trends in Ecology and Evolution , 19 : 18 – 24 .
   PubMed Web of Science ®Google Scholar
• Ostberg , C. O. and Rodriguez , R. J. 2004 . Bi-parentally inherited species-specific markers identify hybridization between rainbow trout and cutthroat trout subspecies . Molecular Ecology Notes , 4 : 26 – 29 .
   Web of Science ®Google Scholar
• Peacock , M. M. and Kirchoff , V. S. 2004 . Assessing the conservation value of hybridized cutthroat trout populations . Transactions of the American Fisheries Society , 133 : 309 – 325 .
   Web of Science ®Google Scholar
• Perry , W. L. , Lodge , D. M. and Feder , J. L. 2002 . Importance of hybridization between indigenous and nonindigenous freshwater species: an overlooked threat to North American biodiversity . Systematic Biology , 51 : 255 – 275 .
   PubMed Web of Science ®Google Scholar
• Pritchard , V. L. , Metcalf , J. L. , Jones , K. , Martin , A. P. and Cowley , D. E. 2009 . Population structure and genetic management of Rio Grande cutthroat trout (Oncorhynchus clarkii virginalis) . Conservation Genetics , 10 : 1209 – 1221 .
   Web of Science ®Google Scholar
• R Development Core Team . 2009 . R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna . Available: www.R-project.org. (August 2010)
   Google Scholar
• Rasmussen , J. B. , Robinson , M. D. and Heath , D. D. 2010 . Ecological consequences of hybridization between native westslope cutthroat (Oncorhynchus clarkii lewisi) and introduced rainbow (Oncorhynchus mykiss) trout: effects on life history and habitat use . Canadian Journal of Fisheries and Aquatic Sciences , 67 : 357 – 370 .
   Web of Science ®Google Scholar
• Raymond , M. and Rousset , F. 1995 . GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism . Journal of Heredity , 86 : 248 – 249 .
   Web of Science ®Google Scholar
• Rexroad , C. E. III , Coleman , R. I. , Gustafson , A. L. , Hershberger , W. K. and Killefer , J. 2002 . Development of rainbow trout microsatellite markers from repeat enriched libraries . Marine Biotechnology , 3 : 12 – 16 .
   Web of Science ®Google Scholar
• Rhymer , J. M. and Simberloff , D. 1996 . Extinction by hybridization and introgression . Annual Review of Ecology and Systematics , 27 : 83 – 109 .
   Google Scholar
• Robinson , M. D. 2007 . “ The ecological consequences of hybridization between native westslope cutthroat trout (Oncorhynchus clarkii lewisi) and introduced rainbow trout (Oncorhynchus mykiss) in south western Alberta. Master's thesis ” . Lethbridge , Alberta : University of Lethbridge .
   Google Scholar
• Rousset , F. 1997 . Genetic differentiation and estimation of gene-flow from F-statistics under isolation by distance . Genetics , 145 : 1219 – 1228 .
   PubMed Web of Science ®Google Scholar
• Rubidge , E. M. and Taylor , E. B. 2004 . Hybrid zone structure and the potential role of selection in hybridizing populations of native westslope cutthroat trout (Oncorhynchus clarki lewisi) and introduced rainbow trout (O. mykiss) . Molecular Ecology , 13 : 3735 – 3749 .
   PubMed Web of Science ®Google Scholar
• Rubidge , E. M. and Taylor , E. B. 2005 . An analysis of spatial and environmental factors influencing hybridization between native westslope cutthroat trout (Oncorhynchus clarkii lewisi) and introduced rainbow trout (O. mykiss) in the upper Kootenay River drainage, British Columbia . Conservation Genetics , 6 : 369 – 384 .
   Web of Science ®Google Scholar
• Sakamoto , T. , Okamoto , N. O. , Ikeda , Y. , Nakamura , Y. and Sato , T. 1994 . Dinucleotide-repeat polymorphism in DNA of rainbow trout and its application in fisheries science . Journal of Fish Biology , 4 : 1093 – 1096 .
   Web of Science ®Google Scholar
• Seiler , S. M. , Gunnell , K. , Ptacek , M. B. and Keeley , E. R. 2009 . Morphological patterns of hybridization between Yellowstone cutthroat trout and introduced rainbow trout in the south fork of the Snake River, Idaho and Wyoming . North American Journal of Fisheries Management , 29 : 1529 – 1539 .
   Web of Science ®Google Scholar
• Smith , C. T. , Koop , B. F. and Nelson , R. J. 1998 . Isolation and characterization of coho salmon (Oncorhynchus kisutch) microsatellites and their use in other salmon . Molecular Ecology , 7 : 1614 – 1616 .
   PubMed Web of Science ®Google Scholar
• Spies , I. B. , Brasier , D. J. , O’Reilly , P. T. L. , Seamons , T. R. and Bentzen , P. 2005 . Development and characterization of novel tetra- tri- and dinucleotide microsatellite markers in rainbow trout (Oncorhynchus mykiss) . Molecular Ecology Notes , 5 : 278 – 281 .
   Web of Science ®Google Scholar
• Tallmon , D. A. , Luikart , G. and Waples , R. S. 2004 . The alluring simplicity and complex reality of genetic rescue . Trends in Ecology and Evolution , 19 : 489 – 496 .
   PubMed Web of Science ®Google Scholar
• Taylor , E. B. , Stamford , M. D. and Baxter , J. S. 2003 . Population subdivision in westslope cutthroat trout (Oncorhynchus clarki lewisi) at the northern periphery of its range: evolutionary inferences and conservation implications . Molecular Ecology , 12 : 2609 – 2622 .
   PubMed Web of Science ®Google Scholar
• USFWS (U.S. Fish and Wildlife Service) . 2006 . Status review: Yellowstone cutthroat trout Oncorhynchus clarkii bouvieri , Denver : USFWS .
   Google Scholar
• Van Kirk , R. W. and Benjamin , L. 2001 . Status and conservation of salmonids in relation to hydrologic integrity in the greater Yellowstone ecosystem . Western North American Naturalist , 61 : 359 – 374 .
   Web of Science ®Google Scholar
• Waples , R. S. and Gaggiotti , O. 2006 . What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity . Molecular Ecology , 15 : 1419 – 1439 .
   PubMed Web of Science ®Google Scholar
• Weigel , D. E. , Peterson , J. T. and Spruell , P. 2002 . A model using phenotypic characteristics to detect introgressive hybridization in wild westslope cutthroat trout and rainbow trout . Transactions of the American Fisheries Society , 131 : 389 – 403 .
   Web of Science ®Google Scholar
• Weigel , D. E. , Peterson , J. T. and Spruell , P. 2003 . Introgressive hybridization between native cutthroat trout and introduced rainbow trout . Ecological Applications , 13 : 38 – 50 .
   Web of Science ®Google Scholar
• Wenburg , J. K. , Bentzen , P. and Foote , C. J. 1998 . Microsatellite analysis of genetic population structure in an endangered salmonid: the coastal cutthroat trout (Oncorhynchus clarki clarki) . Molecular Ecology , 7 : 733 – 749 .
   Web of Science ®Google Scholar