Spatiotemporal Predictive Models for Juvenile Southern Flounder in Texas Estuaries

REFERENCES

• Allen , R. L. and Baltz , D. M. 1997 . Distribution and microhabitat use by flatfishes in a Louisiana estuary . Environmental Biology of Fishes , 50 : 85 – 103 .
   Web of Science ®Google Scholar
• Applebaum , S. , Montagna , P. A. and Ritter , C. 2005 . Status and trends of dissolved oxygen in Corpus Christi Bay, Texas, U.S.A. . Environmental Monitoring and Assessment , 107 : 297 – 311 .
   PubMed Web of Science ®Google Scholar
• Breitburg , D. 2002 . Effects of hypoxia, and the balance between hypoxia and enrichment, on coastal fishes and fisheries . Estuaries , 25 : 767 – 781 .
   Google Scholar
• Campbell , N. , Mackenzie , K. , Zuur , A. F. , Ieno , E. N. and Smith , G. M. 2007 . “ Fish stock identification through neural network analysis of parasite fauna ” . In Analysing ecological data , Edited by: Zuur , A. F. , Ieno , E. N. and Smith , G. M. 449 – 462 . New York : Springer .
   Google Scholar
• Coleman , F. C. , Figueira , W. F. , Ueland , J. S. and Crowder , L. B. 2004 . The impact of U.S. recreational fisheries on marine fish populations . Science , 305 : 1958 – 1960 .
   PubMed Web of Science ®Google Scholar
• Crowder , L. B. , Hazen , E. L. , Avissar , N. , Bjorkland , R. , Latanich , C. and Ogburn , M. B. 2008 . The impacts of fisheries on marine ecosystems and the transition to ecosystem-based management . Annual Review of Ecology, Evolution, and Systematics , 39 : 259
   Web of Science ®Google Scholar
• De’ath , G. 2007 . Boosted trees for ecological modeling and prediction . Ecology , 88 : 243 – 251 .
   PubMed Web of Science ®Google Scholar
• Deubler , E. E. Jr. 1960 . Salinity as a factor in the control of growth and survival of postlarvae of the Southern Flounder, Paralichthys lethostigma . Bulletin of Marine Science of the Gulf and Caribbean , 10 : 338 – 345 .
   Google Scholar
• Elith , J. , Graham , C. H. and Anderson , R. P. 2006 . Novel methods improve prediction of species’ distributions from occurrence data . Ecography , 29 : 129 – 151 .
   Web of Science ®Google Scholar
• Elith , J. , Leathwick , J. R. and Hastie , T. 2008 . A working guide to boosted regression trees . Journal of Animal Ecology , 77 : 802 – 813 .
   PubMed Web of Science ®Google Scholar
• Engelhard , G. H. , Dieckmann , U. and Godo , O. R. 2003 . Age at maturation predicted from routine scale measurements in Norwegian spring-spawning herring (Clupea harengus) using discriminant and neural network analyses . ICES Journal of Marine Science , 60 : 304 – 313 .
   Web of Science ®Google Scholar
• Engelhard , G. H. and Heino , M. 2002 . Maturation characteristics in Norwegian spring-spawning herring before, during, and after a major population collapse . International Council for the Exploration of the Sea , C.M. 2002/Y:10, Copenhagen
   Google Scholar
• Etzold , D. J. and Christmas , J. Y. 1979 . A Mississippi marine finfish management plan , Ocean Springs , Mississippi : Mississippi-Alabama Sea Grant Consortium . MASGP-78-046
   Google Scholar
• Fodrie , F. J. , Heck , K. L. , Powers , S. P. Jr. , Graham , W. M. and Robinson , K. L. 2010 . Climate-related, decadal scale assemblage change of seagrass-associated fishes in the northern Gulf of Mexico . Global Change Biology , 16 : 48 – 59 .
   Web of Science ®Google Scholar
• Friedman , J. H. 2001 . Greedy function approximation: a gradient boosting machine . Annals of Statistics , 29 : 1189 – 1232 .
   Web of Science ®Google Scholar
• Froeschke , J. T. and Froeschke , B. F. 2011 . Spatio-temporal predictive model based on environmental factors for juvenile Spotted Seatrout in Texas estuaries using boosted regression trees . Fisheries Research , 111 : 131 – 138 .
   Web of Science ®Google Scholar
• Froeschke , B. F. , Sterba-Boatwright , B. and Stunz , G. W. 2011 . Assessing Southern Flounder (Paralichthys lethostigma) long-term population trends in the northern Gulf of Mexico using time series analyses . Fisheries Research , 108 : 291 – 298 .
   Web of Science ®Google Scholar
• Froeschke , B. F. , Stunz , G. W. , Robillard , M. M. R. , Williams , J. and Froeschke , J. T. In press . A modeling and field approach to identify essential fish habitat for juvenile Bay Whiff (Citharichthys spilopterus) and Southern Flounder (Paralichthys lethostigma) within the Aransas Bay Complex, TX . Estuaries and Coast , 10.1007/s12237-013-9600-9
   Web of Science ®Google Scholar
• Froeschke , J. T. , Stunz , G. W. and Wildhaber , M. L. 2010 . Environmental influences on the occurrence of coastal sharks in estuarine waters . Marine Ecology Progress Series , 401 : 279 – 292 .
   Web of Science ®Google Scholar
• Gibson , R. N. 1994 . Impact of habitat quality and quantity on the recruitment of juvenile flatfishes . Netherlands Journal of Sea Research , 32 : 191 – 206 .
   Google Scholar
• Glass , L. A. , Rooker , J. R. , Kraus , R. T. and Holt , G. J. 2008 . Distribution, condition, and growth of newly settled Southern Flounder (Paralichthys lethostigma) in the Galveston Bay Estuary, TX . Journal of Sea Research , 59 : 259 – 268 .
   Web of Science ®Google Scholar
• Günter , G. A. 1945 . Studies of marine fishes of Texas . Publication of the Institute of Marine Science University of Texas 1 ,
   Google Scholar
• Halpern , B. S. , Walbridge , S. , Selkoe , K. A. , Kappel , C. V. , Micheli , F. , D’Agrosa , C. , Bruno , J. F. , Casey , K. S. , Ebert , C. , Fox , H. E. , Fujita , R. , Heinemann , D. , Lenihan , H. S. , Madin , E. M. P. , Perry , M. T. , Selig , E. R. , Spalding , M. , Steneck , R. and Watson , R. 2008 . A global map of human impact on marine ecosystems . Science , 319 : 948 – 952 .
   PubMed Web of Science ®Google Scholar
• Hickman , C. P. Jr. 1968 . Glomerular filtration and urine flow in the euryhaline Southern Flounder, Paralichthys lethostigma, in seawater . Canadian Journal of Zoology , 46 : 427 – 437 .
   PubMed Web of Science ®Google Scholar
• Hidalgo , M. , Rouyer , T. , Molinero , J. C. , Massuti , E. , Moranta , J. , Guijarro , B. and Stenseth , N. C. 2011 . Synergistic effects of fishing-induced demographic changes and climate variation on fish population dynamics . Marine Ecology Progress Series , 426 : 1 – 12 .
   Web of Science ®Google Scholar
• Hilborn , R. , Branch , T. A. , Ernst , B. , Magnussum , A. , Minte-Vera , C. V. , Scheurell , M. D. and Valero , J. L. 2003 . State of the world's fisheries . Annual Review of Environment and Resources , 28 : 359 – 399 .
   Web of Science ®Google Scholar
• Jackson , J. B. C. , Kirby , M. X. , Berger , W. H. , Bjorndal , K. A. , Botsford , L. W. , Bourque , B. J. , Bradbury , R. H. , Cooke , R. , Erlandson , J. , Estes , J. A. , Hughes , T. P. , Kidwell , S. , Lange , C. B. , Lenihan , H. S. , Pandolfi , J. M. , Peterson , C. H. , Steneck , R. S. , Tegner , M. J. and Warner , R. R. 2001 . Historical overfishing and the recent collapse of coastal ecosystems . Science , 293 : 629 – 638 .
   PubMed Web of Science ®Google Scholar
• Kusakabe , T. , Komatsu , T. , Tamaki , T. , Nakajima , M. and Aoki , I. 1997 . Prediction of the recruit of Sand Eel in the eastern Seto Inland Sea using a neural network . Bulletin of the Japanese Society of Fisheries Oceanography , 61 : 375 – 380 .
   Google Scholar
• Leathwick , J. R. , Elith , J. , Chadderton , W. L. , Rowe , D. and Hastie , T. 2008 . Dispersal, disturbance, and the contrasting biogeographies of New Zealand's diadromous and non-diadromous fish species . Journal of Biogeography , 35 : 1481 – 1497 .
   Web of Science ®Google Scholar
• Leathwick , J. R. , Elith , J. , Francis , M. P. , Hastie , T. and Taylor , P. 2006 . Variation in demersal fish species richness in the oceans surrounding New Zealand: an analysis using boosted regression trees . Marine Ecology Progress Series , 321 : 267 – 281 .
   Web of Science ®Google Scholar
• Lotze , H. K. , Lenihan , H. S. , Bourque , B. J. , Bradbury , R. H. , Cooke , R. G. , Kay , M. C. , Kidwell , S. M. , Kirby , M. X. , Peterson , C. H. and Jackson , J. B. C. 2006 . Depletion, degradation, and recovery potential of estuaries and coastal seas . Science , 312 : 1806 – 1809 .
   PubMed Web of Science ®Google Scholar
• Marasco , R. J. , Goodman , D. , Grimes , C. B. , Lawson , P. W. , Punt , A. E. and Quinn , T. J. II. 2007 . Ecosystem-based fisheries management: some practical suggestions . Canadian Journal of Fisheries and Aquatic Sciences , 64 : 928 – 939 .
   Web of Science ®Google Scholar
• Martinez-Andrade , F. , Fisher , M. , Bowling , B. and Balboa , B. 2009 . Marine resource monitoring operations manual , Austin : Texas Parks and Wildlife Department .
   Google Scholar
• Montagna , P. A. and Froeschke , J. T. 2009 . Long-term biological effects of coastal hypoxia in Corpus Christi Bay, Texas, USA . Journal of Experimental Marine Biology and Ecology , 381 : S21 – S30 .
   Web of Science ®Google Scholar
• Nañez-James , S. E. , Stunz , G. W. and Holt , S. 2009 . Habitat use patterns of newly settled Southern Flounder, Paralichthys lethostigma, in Aransas–Copano Bay, Texas . Estuaries and Coast , 32 : 350 – 359 .
   Web of Science ®Google Scholar
• NMFS (National Marine Fisheries Service) . 2002 . Annual report to Congress on the status of U.S. fisheries 2001 , Silver Spring , Maryland : NMFS .
   Google Scholar
• NMFS (National Marine Fisheries Service) . 2008 . Annual report to Congress on the status of U.S. fisheries 2007 , Silver Spring , Maryland : NMFS . Available: http://www.nmfs.noaa.gov/sfa/statusoffisheries/2007/2007StatusofUSFisheries_Report_to_Congress.pdf. (July 2013)
   Google Scholar
• Pauly , D. , Christensen , V. , Guènette , S. , Pitcher , T. J. , Sumaila , U. R. , Walters , C. J. , Watson , R. and Zeller , D. 2002 . Towards sustainability in world fisheries . Nature , 418 : 689 – 695 .
   PubMed Web of Science ®Google Scholar
• Pikitch , E. K. , Santora , C. , Babcock , E. A. , Bakun , A. , Bonfil , R. , Conover , D. O. , Dayton , P. , Doukakis , P. , Fluharty , D. , Heneman , B. , Houde , E. D. , Link , J. , Livingston , P. A. , Mangel , M. , McAllister , M. K. , Pope , J. and Sainsbury , K. J. 2004 . Ecology: ecosystem-based fishery management . Science , 305 : 346 – 347 .
   PubMed Web of Science ®Google Scholar
• Potter , E. C. E. , Kell , L. and Reddin , D. G. 1993 . The discrimination of North American and European salmon using a genetic algorithm and by neutral network , Copenhagen : International Council for the Exploration of the Sea . C.M. 1993/M:18
   Google Scholar
• Pyke , C. R. 2004 . Habitat loss confounds climate change impacts . Frontiers in Ecology and Environment , 2 : 178 – 182 .
   Web of Science ®Google Scholar
• R Development Core Team . 2009 . R: A language and environment for statistical computing , Vienna : R Foundation for Statistical Computing . Available: http://www.R-project.org. (July 2013)
   Google Scholar
• Robertson , S. G. and Morison , A. K. 1999 . A trial of artificial neural networks for automatically estimating the age of fish . Marine and Freshwater Research , 50 : 73 – 82 .
   Web of Science ®Google Scholar
• Rogers , B. D. and Herke , W. H. 1985 . Temporal patterns and size characteristics of migrating juvenile fishes and crustaceans in Louisiana marsh . Louisiana State University, Agricultural Experiment Station, Research Report 81 , Baton Rouge
   Google Scholar
• Salia , S. B. 2005 . Neural networks used in classification with emphasis on biological populations in stock identification methods: applications in fishery science , Amsterdam : Academic Press .
   Google Scholar
• Saveliev , A. A. , Mukharamova , S. S. , Chizhikova , N. A. , Budgey , R. and Zuur , A. F. 2007 . “ Spatially continuous data analysis and modeling ” . In Analysing ecological data , Edited by: Zuur , A. F. , Ieno , E. N. and Smith , G. M. 341 – 372 . New York : Springer .
   Google Scholar
• Simmons , E. G. and Hoese , H. D. 1959 . Studies on the hydrography and fish migration of Cedar Bayou, a natural tidal inlet on the central Texas coast . Publications of the Institute of Marine Science , 6 : 56 – 80 .
   Google Scholar
• Stickney , R. R. and White , D. B. 1974 . Effects of salinity on the growth of Paralichthys lethostigma postlarvae reared under aquaculture conditions . Proceedings of the Annual Conference of the Southeastern Association of Game and Fish Commissioners , 27 ( 1973 ) : 532 – 540 .
   Google Scholar
• Stokes , G. G. 1977 . Life history studies of Southern Flounder (Paralichthys lethostigma) and Gulf Flounder (P. albigutta) in the Aransas Bay area of Texas . Texas Parks and Wildlife Department, Technical Series 25 , Austin
   Google Scholar
• Stoner , A. W. , Manderson , J. P. and Pessutti , J. P. 2001 . Spatially explicit analysis of estuarine habitat for juvenile Winter Flounder: combining generalized additive models and geographic information systems . Marine Ecology Progress Series , 213 : 253 – 272 .
   Web of Science ®Google Scholar
• Stunz , G. W. , Linton , T. L. and Colura , R. L. 2000 . Age and growth of Southern Flounder in Texas waters, with emphasis on Matagorda Bay . Transactions of the American Fisheries Society , 129 : 119 – 125 .
   Web of Science ®Google Scholar
• Suryanarayana , I. , Braibanti , A. , Sambasiva Rao , R. , Anantha Ramam , V. , Sudarsan , D. and Nageswara Rao , G. 2008 . Neural networks in fisheries research . Fisheries Research , 92 : 115 – 139 .
   Web of Science ®Google Scholar
• Thuiller , W. 2007 . Climate change and the ecologist . Nature , 448 : 550 – 552 .
   PubMed Web of Science ®Google Scholar
• Vaquer-Sunyer , R. and Duarte , C. M. 2008 . Thresholds of hypoxia for marine biodiversity . Proceedings on the National Academy of Sciences of the USA , 105 : 15452 – 15457 .
   PubMed Web of Science ®Google Scholar
• Whaley , S. D. , Burd , J. J. and Robertson , B. A. 2007 . Using estuarine landscape structure to model distribution patterns in nekton communities and in juveniles of fishery species . Marine Ecology Progress Series , 330 : 83 – 99 .
   Web of Science ®Google Scholar
• Wilks , D. S. 2006 . Statistical methods in the atmospheric sciences, , 2nd edition , Amsterdam : Academic Press .
   Google Scholar
• Zuur , A. F. , Ieno , E. N. and Smith , G. M. 2007 . Analysing ecological data , New York : Springer .
   Google Scholar