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ARTICLE

Comparing Efficiency of American Fisheries Society Standard Snorkeling Techniques to Environmental DNA Sampling Techniques

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Pages 644-651 | Received 27 Jul 2016, Accepted 08 Mar 2017, Published online: 04 May 2017

REFERENCES

  • Barnes, M. A., C. A. Turner, C. L. Jerde, M. A. Renshaw, W. L. Chadderton, and D. M. Lodge. 2014. Environmental conditions influence eDNA persistence in aquatic systems. Environmental Science and Technology 48:1819–1827.
  • Bonar, S., W. A. Hubert, and D. W. Willis. 2009. Standard methods for sampling North American freshwater fishes. American Fisheries Society, Bethesda, Maryland.
  • Bovee, K. D. 1986. Development and evaluation of habitat suitability criteria for use in the instream flow incremental methodology. U.S. Fish and Wildlife Service Biological Report 86(7).
  • Collins, R. A., K. F. Armstrong, A. J. Holyoake, and S. Keeling. 2013. Something in the water: biosecurity monitoring of ornamental fish imports using environmental DNA. Biological Invasions 15:1209–1215.
  • Curry, R. A., R. M. Hughes, M. E. McMaster, and D. J. Zafft. 2009. Coldwater fish in rivers. Pages 139–158 in S. A. Bonar, W. A. Hubert, and D. W. Willis, editors. Standard methods for sampling North American freshwater fishes. American Fisheries Society, Bethesda, Maryland.
  • Dejean, T., A. Valentini, A. Duparc, S. Pellier-Cuit, F. Pompanon, P. Taberlet, and C. Miaud. 2011. Persistence of environmental DNA in freshwater ecosystems. PLOS (Public Library of Science) ONE [online serial] 6(8):e23398.
  • Dejean, T., A. Valentini, C. Miquel, P. Taberlet, E. Bellemain, and C. Miaud. 2012. Improved detection of an alien invasive species through environmental DNA barcoding: the example of the American bullfrog Lithobates catesbeianus. Journal of Applied Ecology 49:953–959.
  • Dunham, J. B., A. E. Rosenberger, R. F. Thurow, C. A. Dolloff, and P. J. Howell. 2009. Coldwater fish in wadeable streams. Pages 119–138 in S. A. Bonar, W. A. Hubert, and D. W. Willis, editors. Standard methods for sampling North American freshwater fishes. American Fisheries Society, Bethesda, Maryland.
  • Ficetola, G., C. Miaud, F. Pompanon, and P. Taberlet. 2008. Species detection using environmental DNA from water samples. Biology Letters 4:423–425.
  • Foote, A. D., P. F. Thomsen, S. Sveegaard, M. Wahlberg, J. Kielgast, L. A. Kyhn, A. B. Salling, A. Galatius, L. Orlando, M. Thomas, and P. Gilbert. 2012. Investigating the potential use of environmental DNA (eDNA) for genetic monitoring of marine mammals. PLOS (Public Library of Science) ONE [online serial] 7(8):e41781.
  • Goldberg, C., D. Pilliod, R. Arkle, and L. Waits. 2011. Molecular detection of vertebrates in stream water: a demonstration using Rocky Mountain tailed frogs and Idaho giant salamanders. PLOS (Public Library of Science) ONE [online serial] 6(7):e22746.
  • Goldberg, C., C. Turner, K. Deiner, K. Klymus, P. Thomsen, M. Murphy, S. Spear, A. Mckee, S. Oyler, S. Cornman, M. Laramie, A. Mahon, R. Lance, D. Pilliod, K. Strickler, L. Waits, A. Fremier, T. Takahara, J. Herder, and P. Taberlet. 2016. Critical considerations for the application of environmental DNA methods to detect aquatic species. Methods in Ecology and Evolution 7:1299–1307.
  • Jerde, C., A. Mahon, W. Chadderton, and D. Lodge 2011. “Sight-unseen” detection of rare aquatic species using environmental DNA. Conservation Letters 4:150–157.
  • Merkes, C. M., S. G. McCalla, N. R. Jensen, M. P. Gaikowski, and J. J. Amberg. 2014. Persistence of DNA in carcasses, slime and avian feces may affect interpretation of environmental DNA data. PLOS (Public Library of Science) ONE [online serial] 9:e113346.
  • Pilliod, D., C. Goldberg, R. Arkle, and L. Waits. 2013. Estimating occupancy and abundance of stream amphibians using environmental DNA from filtered water samples. Canadian Journal of Fisheries and Aquatic Sciences 70:1123–1130.
  • Pilliod, D., C. Goldberg, R. Arkle, and L. Waits. 2014. Factors influencing detection of eDNA from a stream-dwelling amphibian. Molecular Ecology Resources 14:109–116.
  • Ravanat, J. L., T. Douki, and J. Cadet. 2001. Direct and indirect effects of UV radiation on DNA and its components. Journal of Photochemistry and Photobiology 63:88–102.
  • Rees, H., B. Maddison, D. Middleditch, J. Patmore, and K. Gough. 2014. The detection of aquatic animal species using environmental DNA–a review of eDNA as a survey tool in ecology. Journal of Applied Ecology 51:1450–1459.
  • Sassoubre, L. M., K. M. Yamahara, L. D. Gardner, B. A. Block, and A. B. Boehm. 2016. Quantification of environmental DNA (eDNA) shedding and decay rates for three marine fish. Environmental Science and Technology 50:10456–10464.
  • Takahara, T., T. Minamoto, and H. Doi. 2013. Using environmental DNA to estimate the distribution of an invasive fish species in ponds. PLOS (Public Library of Science) ONE [online serial] 8(2):e56584.
  • Takahara, T., T. Minamoto, H. Yamanaka, H. Doi, and Z. Kawabata. 2012. Estimation of fish biomass using environmental DNA. PLOS (Public Library of Science) ONE [online serial] 7(4):e35868.
  • Thomsen, P., J. Kielgast, L. Iversen, C. Wiuf, M. Rasmussen, M. Gilbert, and E. Willerslev. 2011. Monitoring endangered freshwater biodiversity using environmental DNA. Molecular Ecology 21:2565–2573.
  • U.S. Office of the Federal Register. 2013. Endangered and threatened wildlife and plants; proposed designation of critical habitat for the Zuni Bluehead Sucker. Federal Register 78:17(25 January 2013):5351–5369.

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