A molecular investigation into the origin and relationships of karaka/kōpi (Corynocarpus laevigatus) in New Zealand

References

• Aguilar-Meléndez A, Morrell PL, Roose ML, Kim SC 2009. Genetic diversity and structure in semiwild and domesticated chiles (Capsicum annuum; Solanaceae) from Mexico. American Journal of Botany 96: 1190–1202. doi: 10.3732/ajb.0800155
   PubMed Web of Science ®Google Scholar
• Atherton RA 2013. Ngā Uri O Karaka: a genetic study of the karaka/kōpi tree in Aotearoa/New Zealand. Unpublished PhD thesis, Massey University, Palmerston North, New Zealand. 200p.
   Google Scholar
• Baylis GTS 1951. Incipient forest regeneration on Great Island, Three Kings group. Records of the Auckland Institute and Museum 5: 1–12.
   Google Scholar
• Bellot S, Renner SS 2014. Exploring new dating approaches for parasites: the worldwide Apodanthaceae (Cucurbitales) as an example. Molecular Phylogenetics and Evolution 80: 1–10.
   Google Scholar
• Besnard G, El Bakkali A 2014. Sequence analysis of single-copy genes in two wild olive subspecies: nucleotide diversity and potential use for testing admixture. Genome 57: 145–153. doi: 10.1139/gen-2014-0001
   PubMed Web of Science ®Google Scholar
• Bouckaert R, Heled J, Kühnert D, Vaughan T, Wu CH, Xie D, et al. 2014. BEAST 2: a software platform for Bayesian evolutionary analysis. PloS Computational Biology 10(4): e1003537. doi: 10.1371/journal.pcbi.1003537
   PubMed Web of Science ®Google Scholar
• Briggs JD, Leigh JH 1996. Rare or threatened Australian plants. 4th edition. Melbourne, CSIRO. 476 p.
   Google Scholar
• Buckley TR, Leschen RAB 2013. Comparative phylogenetic analysis reveals long-term isolation of lineages on the Three Kings Islands, New Zealand. Biological Journal of the Linnean Society 108: 361–377. doi: 10.1111/j.1095-8312.2012.02009.x
   Web of Science ®Google Scholar
• Byrami M, Ogden J, Horrocks M, Deng Y, Shane P, Palmer J 2002. A palynological study of Polynesian and European effects on vegetation in Coromandel, New Zealand, showing the variability between four records from a single swamp. Journal of the Royal Society of New Zealand 32: 507–531. doi: 10.1080/03014223.2002.9517706
   Web of Science ®Google Scholar
• Campbell JD 2002. Angiosperm fruit and leaf fossils from Miocene silcrete, Landslip Hill, northern Southland, New Zealand. Journal of the Royal Society of New Zealand 32: 149–154. doi: 10.1080/03014223.2002.9517687
   Web of Science ®Google Scholar
• Cheeseman T 1887. Art. XXII—notes on the Three Kings Islands. Transactions and Proceedings of the Royal Society of New Zealand 20: 142–149.
   Google Scholar
• Costall JA, Carter RJ, Shimada Y, Anthony D, Rapson GL 2006. The endemic tree Corynocarpus laevigatus (karaka) as a weedy invader in forest remnants of southern North Island, New Zealand. New Zealand Journal of Botany 44: 5–22. doi: 10.1080/0028825X.2006.9513002
   Web of Science ®Google Scholar
• Cranwell LM 1962. Endemism and isolation in the Three Kings Islands, New Zealand—with notes on pollen and spore types of the endemics. Records of the Auckland Institute and Museum 5: 215–232.
   Google Scholar
• Crepet WL, Nixon KC, Gandolfo MA 2004. Fossil evidence and phylogeny: the age of major angiosperm clades based on mesofossil and macrofossil evidence from Cretaceous deposits. American Journal of Botany 91: 1666–1682. doi: 10.3732/ajb.91.10.1666
   PubMed Web of Science ®Google Scholar
• Dawson MI 1997. Chromosome numbers in Corynocarpus (Corynocarpaceae) New Zealand. Journal of Botany 35: 255–258.
   Web of Science ®Google Scholar
• Dodson JR 1976. Modern pollen spectra from Chatham Island, New Zealand. New Zealand Journal of Botany 14: 341–347. doi: 10.1080/0028825X.1976.10428907
   Google Scholar
• Drummond AJ, Ho SYW, Rawlence N, Rambaut A 2007. A rough guide to BEAST 1.4. http://www.molecularevolution.org/molevolfiles/beast/BEAST14_MANUAL-7-6-07.pdf (accessed 27 July 2015).
   Google Scholar
• van Essen RA, Rapson GL 2005. Fruit size of karaka (Corynocarpus laevigatus) in relation to potential selection by Maori. New Zealand Botanical Society Newsletter 81: 13–16.
   Google Scholar
• Filipowicz N, Renner SS 2010. The worldwide holoparasitic Apodanthaceae confidently placed in the Cucurbitales by nuclear and mitochondrial gene trees. BMC Evolutionary Biology 10: 219. doi: 10.1186/1471-2148-10-219
   PubMed Web of Science ®Google Scholar
• French BR 2006. Food crops of Papua New Guinea. www.foodplantsinternational.com (accessed 30 March 2015).
   Google Scholar
• Guymer GP 1984. Corynocarpus. Flora of Australia Online. Australian Biological Resources Study, Canberra. http://www.environment.gov.au/biodiversity/abrs/online-resources/flora/main/index.html (accessed 30 March 2015).
   Google Scholar
• Hemsley WB 1903. On the genus Corynocarpus, Forst., with descriptions of two new species. Annals of Botany 17: 743–760.
   Google Scholar
• Herzer RH, Chaproniere GCH, Edwards AR, Hollis CJ, Pelletier B, Raine JI, et al. 1997. Seismic stratigraphy and structural history of the Reinga Basin and its margins, southern Norfolk Ridge system. New Zealand Journal of Geology and Geophysics 40: 425–451. doi: 10.1080/00288306.1997.9514774
   Web of Science ®Google Scholar
• Holt K 2009. The Quarternary history of Chatham Island, New Zealand. Unpublished PhD thesis. Massey University, Palmerston North. 243p.
   Google Scholar
• Huson DH, Bryant D 2006. Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution 23: 254–267. doi: 10.1093/molbev/msj030
   PubMed Web of Science ®Google Scholar
• Kay K, Whittall J, Hodges S 2006. A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects. BMC Evolutionary Biology 6: 1471–2148. doi: 10.1186/1471-2148-6-36
   Web of Science ®Google Scholar
• de Lange PJ, Lowe DJ, Newnham RM 1996. What was the original forest cover of Great Island (Three Kings)? Conservation Science Newsletter (Science and Research Division. Department of Conservation) 21/22: 7–11.
   Google Scholar
• Leach HM, Stowe CJ 2005. Oceanic arboriculture at the margins: the case of the karaka (Corynocarpus laevigatus) in Aotearoa. Journal of the Polynesian Society 114: 7–27.
   Web of Science ®Google Scholar
• Léotard G, Duputié A, Kjellberg F, Douzery EJP, Debain C, de Granville JJ, et al. 2009. Phylogeography and the origin of cassava: new insights from the northern rim of the Amazonian basin. Molecular Phylogenetics and Evolution 53: 329–334. doi: 10.1016/j.ympev.2009.05.003
   PubMed Web of Science ®Google Scholar
• Mildenhall DC 1980. New Zealand late Cretaceous and cenozoic plant biogeography: a contribution. Palaeogeography, Palaeoclimatology, Palaeoecology 31: 197–233.
   Google Scholar
• Mildenhall DC 1994. Palynological reconnaissance of Early Cretaceous to Holocene sediments, Chatham Islands, New Zealand. Lower Hutt, New Zealand, Institute of Geological & Nuclear Sciences Ltd.
   Google Scholar
• Molloy BPJ 1990. The origin, relationships, and use of karaka or kopi (Corynocarpus laevigatus). In: Kapoor WHAP ed. Nga Mahi Maori o te Wao Nui a Tane: contributions to an International Workshop on Ethnobotany, Te Rehua Marae. Christchurch, Botany Division, Department of Scientific and Industrial Research. Pp. 48–53.
   Google Scholar
• Oliver WRB 1948. The flora of the Three Kings Islands. Records of the Auckland Institute and Museum 3: 211–238.
   Google Scholar
• Posada D 2008. jModelTest: phylogenetic model averaging. Molecular Biology and Evolution 25: 1253–1256. doi: 10.1093/molbev/msn083
   PubMed Web of Science ®Google Scholar
• Rambaut A, Suchard MA, Xie W, Drummond AJ 2013. Tracer v1.6. http://tree.bio.ed.ac.uk/software/tracer
   Google Scholar
• Shaw J, Lickey EB, Beck JT, Farmer SB, Liu W 2005. The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. American Journal of Botany 92: 142–166. doi: 10.3732/ajb.92.1.142
   PubMed Web of Science ®Google Scholar
• Shepherd LD, McLay TGB 2011. Two micro-scale protocols for the isolation of DNA from polysaccharide-rich plant tissue. Journal of Plant Research 124: 311–314. doi: 10.1007/s10265-010-0379-5
   PubMed Web of Science ®Google Scholar
• van Steenis CGGJ 1951. Corynocarpaceae. In: Flora Malesiana Series 1: Spermatophyta. Jakarta, Noordhoff–Kolff. Pp. 262–264.
   Google Scholar
• Stevenson G 1978. Botanical evidence linking the New Zealand Maoris with New Caledonia and the New Hebrides. Nature 276: 704–705. doi: 10.1038/276704a0
   Web of Science ®Google Scholar
• Stowe CJ 2003. The ecology and ethnobotany of karaka (Corynocarpus laevigatus). Unpublished MSc thesis, University of Otago, Dunedin, New Zealand. 238 p.
   Google Scholar
• Tank DC, Olmstead RG 2009. The evolutionary origin of a second radiation of annual Castilleja (Orobanchaceae) species in South America: the role of long distance dispersal and allopolyploidy. American Journal of Botany 96: 1907–1921. doi: 10.3732/ajb.0800416
   PubMed Web of Science ®Google Scholar
• Thiers B 2015 (continuously updated). ‘Index herbariorum: a global directory of public herbaria and associated staff.’ New York Botanical Garden's Virtual Herbarium. http://sweetgum.nybg.org/ih/ (accessed 3 June 2015).
   Google Scholar
• Wagstaff S, Dawson M 2000. Classification, origin, and patterns of diversification of Corynocarpus (Corynocarpaceae) inferred from DNA sequences. Systematic Botany 25: 134–149. doi: 10.2307/2666679
   Web of Science ®Google Scholar
• Wagstaff SJ, Garnock-Jones PJ 1998. Evolution and biogeography of the Hebe complex (Scrophulariaceae) inferred from ITS sequences. New Zealand Journal of Botany 36: 425–437. doi: 10.1080/0028825X.1998.9512581
   Web of Science ®Google Scholar
• Wen J, Shi S 1999. A phylogenetic and biogeographic study of Hamamelis (Hamamelidaceae), an eastern Asian and North American disjunct genus. Biochemical Systematics and Ecology 27: 55–66. doi: 10.1016/S0305-1978(98)00067-2
   Web of Science ®Google Scholar
• Wheatley JI 1992. A guide to the common trees of Vanuatu with lists of their traditional uses and ni-Vanuatu names. Port Vila, Department of Forestry.
   Google Scholar
• White T, Bruns T, Lee S, Taylor J 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In Innis M, Gelfand D, Shinsky J, White T eds. PCR protocols: a guide to methods and applications. New York, Academic Press. Pp. 315–322.
   Google Scholar
• Wilmshurst JM, Higham TFG, Allen H, Johns D 2004. Early Maori settlement impacts in northern coastal Taranaki, New Zealand. New Zealand Journal of Ecology 28: 167–179.
   Web of Science ®Google Scholar
• Wright AE 1983. Conservation status of the Three Kings Islands endemic flora in 1982. Records of the Auckland Institute and Museum 20: 175–184.
   Google Scholar
• Yen DE 1974. Arboriculture in the subsistence of Santa Cruz, Solomon Islands. Economic Botany 28: 247–284. doi: 10.1007/BF02861424
   Web of Science ®Google Scholar
• Zeder MA, Emshwiller E, Smith BD & Bradley DG 2006. Documenting domestication: the intersection of genetics and archaeology. Trends in Genetics 22: 139–155. doi: 10.1016/j.tig.2006.01.007
   PubMed Web of Science ®Google Scholar
• Zhang L-B, Simmons MP, Kocyan A, Renner SS 2006. Phylogeny of the Cucurbitales based on DNA sequences from three genomes: implications for morphological and sexual system evolution. Molecular Phylogenetics and Evolution 39: 305–322. doi: 10.1016/j.ympev.2005.10.002
   PubMed Web of Science ®Google Scholar