Pyrosequencing analysis for a rapid classification of fowl adenovirus species

References

• Adam , E. , Nasz , I. , Hudecz , F. , Lengyel , A. , Mezo , G. and Dobay , O. 1998 . Characterization of intertype specific epitopes on adenovirus hexon . Archives of Virology , 143 : 1669 – 1682 .
   PubMed Web of Science ®Google Scholar
• Alvarado , I.R. , Villegas , P. , El-Attrache , J. , Jensen , E. , Rosales , G. , Perozo , F. and Purvis , L.B. 2007 . Genetic characterization, pathogenicity, and protection studies with an avian adenovirus isolate associated with inclusion body hepatitis . Avian Diseases , 51 : 27 – 32 .
   PubMed Web of Science ®Google Scholar
• Athappilly , F.K. , Murali , R. , Rux , J.J. , Cai , Z. and Burnett , R.M. 1994 . The refined crystal structure of hexon, the major coat protein of adenovirus 2, at 2.9 Å resolution . Journal of Molecular Biology , 242 : 430 – 455 .
   PubMed Web of Science ®Google Scholar
• Balamurugan , V. and Kataria , J.M. 2004 . The hydropericardium syndrome in poultry—a current scenario . Veterinary Research Communications , 28 : 127 – 148 .
   PubMed Web of Science ®Google Scholar
• Christensen , N.H. and Saifuddin , M. 1989 . A primary epidemic of inclusion body hepatitis in broilers . Avian Diseases , 33 : 622 – 630 .
   PubMed Web of Science ®Google Scholar
• Crawford-Miksza , L. and Schnurr , D.P. 1996 . Analysis of 15 adenovirus hexon proteins reveals the location and structure of seven hypervariable regions containing serotype-specific residues . Journal of Virology , 70 : 1836 – 1844 .
   PubMed Web of Science ®Google Scholar
• Deyde , V.M. and Gubareva , L.V. 2009 . Influenza genome analysis using pyrosequencing method: current applications for a moving target . Expert Review of Molecular Diagnostics , 9 : 493 – 509 .
   PubMed Web of Science ®Google Scholar
• Deyde , V.M. , Nguyen , T. , Bright , R.A. , Balish , A. , Shu , B. Lindstrom , S. 2009 . Detection of molecular markers of antiviral resistance in influenza A (H5N1) viruses using a pyrosequencing method . Antimicrobial Agents and Chemotherapy , 53 : 1039 – 1047 .
   PubMed Web of Science ®Google Scholar
• Elahi , E. , Pourmand , N. , Chaung , R. , Rofoogaran , A. , Boisver , J. Samimi-Rad , K. 2003 . Determination of hepatitis C virus genotype by pyrosequencing . Journal of Virological Methods , 109 : 171 – 176 .
   PubMed Web of Science ®Google Scholar
• Erny , K.M. , Barr , D.A. and Fahey , K.J. 1991 . Molecular characterization of highly virulent fowl adenoviruses associated with outbreaks of inclusion body hepatitis . Avian Pathology , 20 : 597 – 606 .
   PubMed Web of Science ®Google Scholar
• Erny , K. , Pallister , J. and Sheppard , M. 1995 . Immunological and molecular comparison of fowl adenovirus serotypes 4 and 10 . Archives of Virology , 140 : 491 – 501 .
   PubMed Web of Science ®Google Scholar
• Gharizadeh , B. , Akhras , M. , Nourizad , N. , Ghaderi , M. , Yasuda , K. , Nyrén , P. and Pourmand , N. 2006 . Methodological improvements of pyrosequencing technology . Journal of Biotechnology , 124 : 504 – 511 .
   PubMed Web of Science ®Google Scholar
• Grgic , H. , Philippe , C. , Ojkic , D. and Nagy , E. 2006 . Study of vertical transmission of fowl adenoviruses . Canadian Journal of Veterinary Research , 70 : 230 – 233 .
   PubMed Web of Science ®Google Scholar
• Grimes , T.M. and King , D.J. 1977 . Serotyping avian adenoviruses by a microneutralization procedure . American Journal of Veterinary Research , 38 : 317 – 321 .
   PubMed Web of Science ®Google Scholar
• Grimes , T.M. , King , D.J. , Kleven , S.H. and Fletcher , O.J. 1977 . Involvement of a type-8 avian adenovirus in the etiology of inclusion body hepatitis . Avian Diseases , 21 : 26 – 38 .
   PubMed Web of Science ®Google Scholar
• Hess , M. 2000 . Detection and differentiation of avian adenoviruses: a review . Avian Pathology , 29 : 195 – 206 .
   PubMed Web of Science ®Google Scholar
• Hess , M. , Raue , R. and Prusas , C. 1999 . Epidemiological studies on fowl adenovirus isolated from cases of infectious hydropericardium . Avian Pathology , 28 : 433 – 439 .
   PubMed Web of Science ®Google Scholar
• ICTVdB Management 2006 . 00.001.0.02.001. Fowl adenovirus A C. Büchen-Osmond ICTVdB—The Universal Virus Database (version 4) . New York : Columbia University .
   Google Scholar
• Jadhao , S.J. , Deepak , J.N. , Kataria , J.M. , Kataria , R.S. , Tiwari , A.K. Somvanshi , R. 2003 . Characterisation of fowl, adenoviruses from chickens affected with infectious hydropericardium during 1994–1998 in India . Indian Journal of Experimental Biology , 41 : 321 – 327 .
   PubMedGoogle Scholar
• McFerran , J.B. and Connor , T.J. 1977 . Further studies on the classification of fowl adenoviruses . Avian Diseases , 21 : 585 – 595 .
   PubMed Web of Science ®Google Scholar
• McFerran , J.B. and Smyth , J.A. 2000 . Avian adenoviruses . Revue Scientifique et Technique (International Office of Epizootics) , 19 : 589 – 601 .
   PubMed Web of Science ®Google Scholar
• McFerran , J.B. , McCracken , R.M. , Connor , T.J. and Evans , R.T. 1976 . Isolation of viruses from clinical outbreaks of inclusion body hepatitis . Avian Pathology , 5 : 315 – 324 .
   PubMedGoogle Scholar
• Meulemans , G. , Boschmans , M. , Berg , T.P. and Decaesstecker , M. 2001 . Polymerase chain reaction combined with restriction enzyme analysis for detection and differentiation of fowl adenoviruses . Avian Pathology , 30 : 655 – 660 .
   PubMed Web of Science ®Google Scholar
• Muroga , N. , Taharaguchi , S. , Ohta , H. , Yamazaki , K. and Takase , K. 2006 . Pathogenicity of fowl adenovirus isolated from gizzard erosions to immuno-suppressed chickens . The Journal of Veterinary Medical Science , 68 : 289 – 291 .
   PubMed Web of Science ®Google Scholar
• Nakamura , K. , Mase , M. , Yamaguchi , S. , Shibahara , T. and Yuasa , N. 1999 . Pathologic study of specific-pathogen-free chicks and hens inoculated with adenovirus isolated from hydropericardium syndrome . Avian Diseases , 43 : 414 – 423 .
   PubMed Web of Science ®Google Scholar
• Nakamura , K. , Tanaka , H. , Mase , M. , Imada , T. and Yamada , M. 2002 . Pancreatic necrosis and ventricular erosion in adenovirus-associated hydropericardium syndrome of broilers . Veterinary Pathology , 39 : 403 – 406 .
   PubMed Web of Science ®Google Scholar
• Norby , E. 1969 . The relationship between the soluble antigens and the virion of adenovirus type 3. IV. Immunological complexity of soluble components . Virology , 37 : 565 – 576 .
   PubMed Web of Science ®Google Scholar
• Ojkic , D. , Krell , P.J. , Tuboly , T. and Nagy , E. 2008 . Characterization of fowl adenoviruses isolated in Ontario and Quebec, Canada . Canadian Journal of Veterinary Research , 72 : 236 – 241 .
   PubMed Web of Science ®Google Scholar
• Ono , M. , Okuda , Y. , Yazawa , S. , Imai , Y. , Shibata , I. , Sato , S. and Okada , K. 2003 . Adenoviral gizzard erosion in commercial broiler chickens . Veterinary Pathology , 40 : 294 – 303 .
   PubMed Web of Science ®Google Scholar
• Ono , M. , Okuda , Y. , Yazawa , S. , Shibata , I. , Tanimura , N. Kimura , K. 2001 . Epizootic outbreaks of gizzard erosion associated with adenovirus infection in chickens . Avian Diseases , 45 : 268 – 275 .
   PubMed Web of Science ®Google Scholar
• Philippe , C. , Grgic , H. , Ojkic , D. and Nagy , E. 2007 . Serologic monitoring of a broiler breeder flock previously affected by inclusion body hepatitis and testing of the progeny for vertical transmission of fowl adenoviruses . Canadian Journal of Veterinary Research , 71 : 98 – 102 .
   PubMed Web of Science ®Google Scholar
• Quince , C. , Lanzen , A. , Curtis , T.P. , Davenport , R.J. , Hall , N. Head , I.M. 2009 . Accurate determination of microbial diversity from 454 pyrosequencing data . Nature Methods , 6 : 639 – 641 .
   PubMed Web of Science ®Google Scholar
• Raue , R. and Hess , M. 1998 . Hexon based PCRs combined with restriction enzyme analysis for rapid detection and differentiation of fowl adenoviruses and egg drop syndrome virus . Journal of Virological Methods , 73 : 211 – 217 .
   PubMed Web of Science ®Google Scholar
• Roberts , M.M. , White , J.L. , Grutter , M.G. and Burnett , R.M. 1986 . Three-dimensional structure of the adenovirus major coat protein hexon . Science , 232 : 1148 – 1151 .
   PubMed Web of Science ®Google Scholar
• Ronaghi , M. and Elahi , E. 2002 . Pyrosequencing for microbial typing . Journal of Chromatography B , 782 : 67 – 72 .
   PubMed Web of Science ®Google Scholar
• Saifuddin , M. and Wilks , C.R. 1991 . Pathogenesis of an acute viral hepatitis: inclusion body hepatitis in the chicken . Archives of Virology , 116 : 33 – 43 .
   PubMed Web of Science ®Google Scholar
• Sheppard , M. , McCoy , R.J. and Werner , W. 1995 . Genomic mapping and sequence analysis of the fowl adenovirus serotype 10 hexon gene . Journal of General Virology , 76 : 2595 – 2600 .
   PubMed Web of Science ®Google Scholar
• Steer , P.A. , Kirkpatrick , N.C. , O'Rourke , D. and Noormohammadi , A.H. 2009 . Classification of fowl adenovirus serotypes by use of high-resolution melting-curve analysis of the hexon gene region . Journal of Clinical Microbiology , 47 : 311 – 321 .
   PubMed Web of Science ®Google Scholar
• Swan , D.C. , Limor , J.R. , Duncan , K.L. , Rajeevan , M.S. and Unger , E.R. 2006 . Human papillomavirus type 16 variant assignment by pyrosequencing . Journal of Virological Methods , 136 : 166 – 170 .
   PubMed Web of Science ®Google Scholar
• Tamura , K. , Dudley , J. , Nei , M. and Kumar , S. 2007 . MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 . Molecular Biology and Evolution , 24 : 1596 – 1599 .
   PubMed Web of Science ®Google Scholar
• Toogood , C.I. , Crompton , J. and Hay , R.T. 1992 . Antipeptide antisera define neutralizing epitopes on the adenovirus hexon . Journal of General Virology , 73 : 1429 – 1435 .
   PubMed Web of Science ®Google Scholar
• Toro , H. , Gonzalez , C. , Cerda , L. , Morales , M.A. , Dooner , P. and Salamero , M. 2002 . Prevention of inclusion body hepatitis/hydropericardium syndrome in progeny chickens by vaccination of breeders with fowl adenovirus and chicken anemia virus . Avian Diseases , 46 : 547 – 554 .
   PubMed Web of Science ®Google Scholar
• Toro , H. , Prusas , C. , Raue , R. , Cerda , L. , Geisse , C. , Gonzalez , C. and Hess , M. 1999 . Characterization of fowl adenoviruses from outbreaks of inclusion body hepatitis/hydropericardium syndrome in Chile . Avian Diseases , 43 : 262 – 270 .
   PubMed Web of Science ®Google Scholar