Improved xenobiotic-degrading activity of Rhodococcus opacus strain 1cp after dormancy

References

• Bjedov , I. , Tenallion , O. , Gerad , B. , Sousa , V. , Denamur , E. , Radman , M. , Taddei , F. and Matic , I. 2003 . Stress-induced mutagenesis in bacteria . Science , 300 : 1404 – 1409 .
   PubMed Web of Science ®Google Scholar
• Aersten , A. and Michielis , C. W. 2005 . Diversify or die: Generation of diversity in response to stress . Crit. Rev. Microbiol. , 31 : 69 – 78 .
   PubMed Web of Science ®Google Scholar
• Avery , S. V. 2006 . Microbial cell individuality and the underlying sources of heterogeneity . Nat. Rev. Microbiol. , 4 : 577 – 587 .
   PubMed Web of Science ®Google Scholar
• Henderson , I. R. , Owen , P. and Nataro , J. P. 1999 . Molecular switches—the ON and OFF of bacterial phase variation . Mol. Microbiol. , 33 : 919 – 932 .
   PubMed Web of Science ®Google Scholar
• van der Woude , M. W. and Bäumler , A. J. 2004 . Phase and antigenic variation in bacteria . Clin. Microbiol. Rev. , 17 : 581 – 611 .
   PubMed Web of Science ®Google Scholar
• Muliukin , A. L. , Lusta , K. A. , Griaznova , M. N. , Kozlova , A. N. , Duzha , M. V. , Duda , V. I. and El-Registan , G. I. 1996 . Formation of a resting form of Bacillus cereus and Micrococcus luteus . Mikrobiologiia , 65 : 782 – 789 .
   PubMedGoogle Scholar
• Suzina , N. E. , Mulyukin , A. L. , Dmitriev , V. V. , Nikolaev , Y. A. , Shorokhova , A. P. , Bobkova , Yu.S. , Barinova , E. S. , Plakunov , V. K. , El-Registan , G. I. and Duda , V. I. 2006 . The structural bases of long-term anabiosis in non-spore-forming bacteria . J. Adv. Space Res. , 38 : 1209 – 1219 .
   Web of Science ®Google Scholar
• Anuchin , A. , Mulyukin , A. , Suzina , N. , Duda , V. , El-Registan , G. and Kaprelyants , A. 2009 . Dormant forms of Mycobacterium smegmatis with distinct morphology . Microbiology , 155 : 1071 – 1079 .
   PubMed Web of Science ®Google Scholar
• Doroshenko , E. V. , Loko , N. G. , Il’inskaia , O. N. , Kolpakov , A. I. , Gornova , I. B. , Klimanova , E. V. and El-Registan , G. I. 2001 . Characteristics of Bacillus cereus dissociants . Mikrobiologiia , 70 : 811 – 819 .
   PubMedGoogle Scholar
• Muliukin , A. L. , Kozlova , A. N. and El-Registan , G. I. 2008 . Properties of the phenotypic variants of Pseudomonas aurantiaca and P. fluorescens . Mikrobiologiia , 77 : 766 – 776 .
   PubMedGoogle Scholar
• Goodfellow , M. 1989 . “ Section 26: Nocardioform actinomycetes genus Rhodococcus ” . In Bergey's Manual of Systematic Bacteriology , Edited by: Holt , J. G. 2362 – 2371 . Baltimore, MD : Williams and Wilkins .
   Google Scholar
• Larkin , M. J. , Kulakov , L. A. and Allen , C. C. 2005 . Biodegradation and Rhodococcus – masters of catabolic versatility . Curr. Opin. Biotechnol. , 16 : 282 – 290 .
   PubMed Web of Science ®Google Scholar
• Martinkova , L. , Uhnakova , B. , Patek , M. , Nesvera , J. and Kren , V. 2009 . Biodegradation potential of the genus Rhodococcus . Environ. Int. , 35 : 162 – 177 .
   PubMed Web of Science ®Google Scholar
• Shleeva , M. , Bagramyan , K. , Telkov , M. V. , Mukamolova , G. V. , Kell , D. B. , Young , M. and Kaprelyants , A. S. 2002 . Formation and resuscitation of ‘non-culturable’ cells of Rhodococcus rhodochrous and Mycobacterium tuberculosis in prolonged stationary phase . Microbiology , 148 : 1581 – 1591 .
   PubMed Web of Science ®Google Scholar
• Veeranagouda , Y. , Lim , E. J. , Kim , D. W. , Kim , J.-K. , Cho , K. , Heipieper , H. J. and Lee , K. 2009 . Formation of specialized aerial architectures by Rhodococcus during utilization of vaporized p-cresol . Microbiology , 155 : 3788 – 3796 .
   PubMed Web of Science ®Google Scholar
• Alvarez , H. M. , Silva , R. A. , Cesari , A. C. , Zamit , A. L. , Peressutti , S. R. , Reichelt , R. , Keller , U. , Malkus , U. , Rasch , C. , Maskow , T. , Mayer , F. and Steinbüchel , A. 2004 . Physiological and morphological responses of the soil bacterium Rhodococcus opacus strain PD630 to water stress . FEMS Microbiol. Ecol. , 50 : 75 – 86 .
   PubMed Web of Science ®Google Scholar
• Gorlatov , S. N. , Maltseva , O. V. , Shevchenko , V. I. and Golovleva , L. A. 1989 . Degradation of chlorophenols by a culture of Rhodococcus erythropolis . Mikrobiologiia , 58 : 802 – 806 .
   Google Scholar
• Moiseeva , O. V. , Belova , O. V. , Solyanikova , I. P. , Schlömann , M. and Golovleva , L. A. 2001 . Enzymes of novel modified ortho-pathway of Rhodococcus opacus 1cp, utilizing 2-chlorophenol . Biokhimiya (Moscow) , 66 : 678 – 687 .
   Google Scholar
• Maltseva , O. V. , Solyanikova , I. P. and Golovleva , L. A. 1991 . Pyrocatechases of the strain Rhodococcus erythropolis—destructor of chlorophenols: purification and properties . Biokhimiya (Moscow) , 56 : 2188 – 2197 .
   Google Scholar
• Suvorova , M. M. , Solyanikova , I. P. and Golovleva , L. A. 2006 . Specificity of catechol ortho-cleavage during para-toluate degradation by Rhodococcus opacus 1cp . Biokhimiya (Moscow) , 71 : 1616 – 1624 .
   Google Scholar
• Kolomytseva , M. P. , Baskunov , B. P. and Golovleva , L. A. 2007 . Intradiol pathway of para-cresol conversion by Rhodococcus opacus 1cp . Biotechnol. J. , 1 : 886 – 893 .
   Google Scholar
• Maltseva , O. V. , Solyanikova , I. P. and Golovleva , L. A. 1994 . Chlorocatechol 1,2-dioxygenase from Rhodococcus erythropolis 1cp. Kinetic and immunochemical comparison with analogous enzymes from gram-negative strains . Eur. J. Biochem. , 226 : 1053 – 1061 .
   PubMedGoogle Scholar
• Bondar , V. S. , Boersma , M. G. , Golovlev , E. L. , Vervoort , J. , van Berkel , W. J.H. , Finkelstein , Z. I. , Solyanikova , I. P. , Golovleva , L. A. and Rietjens , I. M.C.M. 1998 . 19F NMR study on the biodegradation of fluorophenols by various Rhodococcus species . Biodegradation , 9 : 475 – 486 .
   PubMed Web of Science ®Google Scholar
• Suzina , N. E. , Mulyukin , A. L. , Kozlova , A. N. , Shorokhova , A. P. , Dmitriev , V. V. , Barinova , E. S. , Mokhova , O. N. , El’-Registan , G. I. and Duda , V. I. 2004 . Ultrastructure of resting cells of some non-spore-forming bacteria . Microbiologiia , 73 : 435 – 447 .
   Web of Science ®Google Scholar
• Moiseeva , O. V. , Solyanikova , I. P. , Kaschabek , S. R. , Gröning , J. , Thiel , M. , Golovleva , L. A. and Schlömann , M. 2002 . A new modified ortho-cleavage pathway of 2-chlorophenol degradation by Rhodococcus opacus 1cp: genetic and biochemical evidences . J. Bacteriol. , 184 : 5282 – 5292 .
   PubMed Web of Science ®Google Scholar
• Hayaishi , O. , Katagiri , M. and Rothberg , S. 1957 . Pyrocatechase . J. Biol. Chem. , 229 : 905 – 920 .
   PubMed Web of Science ®Google Scholar
• Schmidt , E. and Knackmuss , H.-J. 1980 . Chemical structure and biodegradability of halogenated aromatic compounds. Conversion of chlorinated muconic acids into maleilacetic acid . Biochem. J. , 192 : 339 – 347 .
   PubMed Web of Science ®Google Scholar
• Dorn , E. and Knackmuss , H.-J . 1978 . Two catechol 1,2-dioxygenases, pyrocatechase I and pyrocatechase II, were found in 3-chlorobenzoate-grown cells of Pseudomonas sp . Biochem. J. , 174 : 85 – 94 .
   PubMed Web of Science ®Google Scholar
• Schlömann , M. , Schmidt , E. and Knackmuss , H.-J . 1990 . Different types of dienelactone hydrolase in 4-fluorobenzoate-utilizing bacteria . J. Bacteriol. , 172 : 5112 – 5118 .
   PubMed Web of Science ®Google Scholar
• Maltseva , O. V. , Solyanikova , I. P. , Golovleva , L. A. , Schlömann , M. and Knackmuss , H.-J . 1994 . Dienelactone hydrolase from Rhodococcus erythropolis 1cp: purification and properties . Arch. Microbiol. , 162 : 368 – 374 .
   Web of Science ®Google Scholar
• Solyanikova , I. P. , Konovalova , E. I. and Golovleva , L. A. 2009 . Methylcatechol 1,2-dioxygenase of Rhodococcus opacus 6a—new type of catechol-cleaving enzyme . Biokhimiya (Moscow) , 74 : 1221 – 1229 .
   Google Scholar
• Sudo , S. Z. and Dworkin , M. 1973 . Comparative biology of procaryotic resting cells . Adv. Microbiol. Physiol. , 9 : 153 – 224 .
   PubMedGoogle Scholar
• Kolomytseva , M. P. , Solyanikova , I. P. , Golovlev , E. L. and Golovlela , L. A. 2005 . Heterogeneity of Rhodococcus opacus 1cp as a response to stress induced by chlorophenols . Prikl. Biokhim. Mikrobiol. , 41 : 541 – 546 .
   PubMedGoogle Scholar
• Konovalova , E. I. , Solyanikova , I. P. and Golovleva , L. A. 2009 . Degradation of 4-Chlorophenol by the strain Rhodococcus opacus 6a . Microbiologiia , 78 : 805 – 807 .
   Web of Science ®Google Scholar
• McLeod , M. P. , Warren , R. L. , Hsiao , W. W. , Araki , N. , Myhre , M. , Fernandes , C. , Miyazawa , D. , Wong , W. , Lillquist , A. L. , Wang , D. , Dosanjh , M. , Hara , H. , Petrescu , A. , Morin , R. D. , Yang , G. , Stott , J. M. , Schein , J. E. , Shin , H. , Smailus , D. , Siddiqui , A. S. , Marra , M. A. , Jones , S. J. , Holt , R. , Brinkman , F. S. , Miyauchi , K. , Fukuda , M. , Davies , J. E. , Mohn , W. W. and Eltis , L. D . 2006 . The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse . Proc. Natl. Acad. Sci. USA , 103 : 15582 – 15587 .
   PubMed Web of Science ®Google Scholar
• Posada , A. C. 2006 . Biphenyl degradation genes in Rhodococcus sp. I24 . MURJ , 14 : 18 – 21 .
   Google Scholar
• Elowitz , M. B. , Levine , A. J. , Siggia , E. D. and Swain , P. S . 2002 . Stochastic gene expression in a single cell . Science , 297 : 1183 – 1186 .
   PubMed Web of Science ®Google Scholar