References
- Benjamini, Y., Hochberg, Y. ( 1995). Controlling the false discovery rate: A practical and powerful approach to multiple testing. Journal of the Royal Statistical Society B 57:12.
- Cramér, H., Leadbetter, M. R. ( 1967). Stationary and related stochastic processes; Sample function properties and their applications. Wiley Series in Probability and Mathematical Statistics. New York: Wiley. 46, p. 348.
- Dobigeon, N., Tourneret, J. Y., Davy, M. ( 2007). Joint segmentation of piecewise constant autoregressive processes by using a hierarchical model and a Bayesian sampling approach. IEEE Tran Signal Processing 55(4):1251–1263.
- Du, P., Kibbe, W. A., Lin, S. M. ( 2006). Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching. Bioinformatics 22(17):2059–2065.
- Gregoire, J. M., Dale, D., van Dover, R. B. ( 2011). A wavelet transform algorithm for peak detection and application to powder x-ray diffraction data. The Review of Scientific Instruments 82(1):015105.
- Hsu, L. et al. ( 2005). Denoising array-based comparative genomic hybridization data using wavelets. Biostatistics 6(2):211–226.
- Kawahara, Y., Sugiyama, M. ( 2009). Change-point detection in time-series data by direct density-ratio estimation. SDM 9.
- Kim, J. et al. ( 2009). A robust peak detection method for RNA structure inference by high-throughput contact mapping. Bioinformatics 25(9):1137–1144.
- Lai, Y., Zhao, H. ( 2005). A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data. Computational biology and chemistry 29(1):47–54.
- Leisch, F., Hornik, K., Kuan, C. M. ( 2000). Monitoring structural changes with the generalized fluctuation test. Econometric Theory 16.6:835–854.
- Li, W., Lee, A., Gregersen, P. K. ( 2009). Copy-number-variation and copy-number-alteration region detection by cumulative plots. BMC Bioinformatics 10(Suppl 1):S67.
- Minin, V. N. et al. ( 2005). Dual multiple change-point model leads to more accurate recombination detection. Bioinformatics 21(13):3034–3042.
- Muggeo, V. M., Adelfio, G. ( 2011). Efficient change point detection for genomic sequences of continuous measurements. Bioinformatics 27(2):161–166.
- Olshen, A. B. et al. ( 2004). Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics 5(4):557–572.
- Scholkmann, F., Boss, J., WolfAn, M. ( 2012). Efficient algorithm for automatic peak detection in noisy periodic and quasi-periodic signals. Algorithms 5:588–603.
- Schwartzman, A., Gavrilov, Y., Adler, R. J. ( 2011). Multiple testing of local maxima for detection of peaks in 1D. Annals of Statistics 39(6):3290–3319.
- Schwartzman, A., Jaffe, A., Gavrilov Y., Meyer, C. A. ( 2013). Multiple testing of local maxima for detection of peaks in chip-seq data. Annals of Applied Statistics, Ann. Appl. Stat. 7(1):471–494.
- Scott, D. W. ( 1992). Multivariate Density Estimation: Theory, Practice, and Visualization. New York: Wiley.
- Wang, Y. et al. ( 2011). Non-parametric change-point method for differential gene expression detection. PloS One, 6(5):e20060.
- Wasserman, L. ( 2006). All of Nonparametric Statistics. Springer Texts in Statistics. New York, London: Springer. 46, p. 268.
- Wee, A. et al. ( 2008). A continuous wavelet transform algorithm for peak detection. Electrophoresis 29(20):4215–4225.
- Zhang, J., Zhou, X., Wang, H., Suffredini, A., Zhang, L., Huang, Y., Wong, S. ( 2010). Bayesian peptide peak detection for high resolution TOF mass spectrometry, signal processing. IEEE Transactions On 58(11):5883–5894.