Early Detection of Nonnative Alleles in Fish Populations: When Sample Size Actually Matters

REFERENCES

• Allendorf, F. W., R. F. Leary, P. Spruell, and J. K. Wenburg. 2001. The problems with hybrids: setting conservation guidelines. Trends in Ecology and Evolution 16:613–622.
   Web of Science ®Google Scholar
• Allendorf, F. W., and G. Luikart. 2013. Conservation and the genetics of populations second edition. Management. Wiley-Blackwell Publishing, Oxford, UK.
   Google Scholar
• Amish, S. J., P. A. Hohenlohe, S. Painter, R. F. Leary, C. Muhlfeld, F. W. Allendorf, and G. Luikart. 2012. RAD sequencing yields a high success rate for Westslope Cutthroat and Rainbow Trout species-diagnostic SNP assays. Molecular Ecology Resources 12:653–660.
   PubMed Web of Science ®Google Scholar
• Behnke, R. J. 2002. Trout and salmon of North America. Simon and Schuster, New York.
   Google Scholar
• Bennett, S. N., and J. L. Kershner. 2009. Levels of introgression in Westslope Cutthroat Trout populations nine years after changes to Rainbow Trout stocking programs in southeastern British Columbia. North American Journal of Fisheries Management 29:1271–1282.
   Web of Science ®Google Scholar
• Boyer, M. C., C. C. Muhlfeld, and F. W. Allendorf. 2008. Rainbow Trout (Oncorhynchus mykiss) invasion and the spread of hybridization with native Westslope Cutthroat Trout (Oncorhynchus clarkii lewisi). Canadian Journal of Fisheries and Aquatic Sciences 65:658–669.
   Web of Science ®Google Scholar
• Della Croce, P., G. C. Poole, and G. Luikart. 2016. Detecting and quantifying introgression in hybridized populations: Simplifying assumptions yield overconfidence. Molecular Ecology Resources 16:1287–1302.
   PubMed Web of Science ®Google Scholar
• Epperson, B. K., B. H. McRae, K. I. M. Scribner, S. A. Cushman, M. S. Rosenberg, M.-J. Fortin, P. M. A. James, M. Murphy, S. Manel, P. Legendre, and M. R. T. Dale. 2010. Utility of computer simulations in landscape genetics. Molecular Ecology 19:3549–3564.
   PubMed Web of Science ®Google Scholar
• Fausch, K. D., B. E. Rieman, J. B. Dunham, M. K. Young, and D. P. Peterson. 2009. Invasion versus isolation: trade-offs in managing native salmonids with barriers to upstream movement. Conservation Biology 23:859–870.
   PubMed Web of Science ®Google Scholar
• Gresswell, R. E., editor. 1988. Status and management of interior stocks of Cutthroat Trout. American Fisheries Society, Symposium 4, Bethesda, Maryland.
   Google Scholar
• Hitt, N. P., C. A. Frissell, C. C. Muhlfeld, and F. W. Allendorf. 2003. Spread of hybridization between native Westslope Cutthroat Trout, Oncorhynchus clarki lewisi, and nonnative Rainbow Trout, Oncorhynchus mykiss. Canadian Journal of Fisheries and Aquatic Sciences 60:1440–1451.
   Web of Science ®Google Scholar
• Hohenlohe, P. A., S. J. Amish, J. M. Catchen, F. W. Allendorf, and G. Luikart. 2011. Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between Rainbow and Westslope Cutthroat trout. Molecular Ecology Resources 11:117–122.
   PubMed Web of Science ®Google Scholar
• Kovach, R. P., C. C. Muhlfeld, M. C. Boyer, W. H. Lowe, F. W. Allendorf, and G. Luikart. 2015. Dispersal and selection mediate hybridization between a native and invasive species. Proceedings of the Royal Society of London B: Biological Sciences 282(1799):20142454.
   Web of Science ®Google Scholar
• Miller, R. R., J. D. Williams, and J. E. Williams. 1989. Extinctions of North American fishes during the past century. Fisheries 14:22–38.
   Web of Science ®Google Scholar
• Muhlfeld, C. C., V. D'Angelo, S. T. Kalinowski, E. L. Landguth, C. C. Downs, J. Tohtz, and J. L. Kershner. 2012. A fine-scale assessment of using barriers to conserve native stream salmonids: a case study in Akokala Creek, Glacier National Park, USA. Open Fish Science Journal 5:9–20.
   Google Scholar
• Novinger, D. C., and F. J. Rahel. 2003. Isolation management with artificial barriers as a conservation strategy for Cutthroat Trout in headwater streams. Conservation Biology 17:772–781.
   Web of Science ®Google Scholar
• Perry, W. L., D. M. Lodge, and J. L. Feder. 2002. Importance of hybridization between indigenous and nonindigenous freshwater species: an overlooked threat to North American biodiversity. Systematic Biology 51:255–275.
   PubMed Web of Science ®Google Scholar
• Peterson, M. P., M. R. Campbell, C. C. Cegelski, and M. S. Powell. 2004. Introgressive hybridization between Westslope Cutthroat Trout and native Rainbow Trout in Big Creek, Idaho. Propagated Fish in Resource Management 44:505–514.
   Google Scholar
• R Core Team. 2015. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna.
   Google Scholar
• Randi, E. 2008. Detecting hybridization between wild species and their domesticated relatives. Molecular Ecology 17:285–293.
   PubMed Web of Science ®Google Scholar
• Randi, E., P. Hulva, E. Fabbri, M. Galaverni, A. Galov, J. Kusak, D. Bigi, B. Č. Bolfíková, M. Smetanová, and R. Caniglia. 2014. Multilocus detection of wolf × dog hybridization in Italy, and guidelines for marker selection. PloS ONE 9:e86409.
   Google Scholar
• Randi, E., M. Pierpaoli, M. Beaumont, B. Ragni, and A. Sforzi. 2001. Genetic identification of wild and domestic cats (Felis silvestris) and their hybrids using Bayesian clustering methods. Molecular Biology and Evolution 18:1679–1693.
   PubMed Web of Science ®Google Scholar
• Rhymer, J. M., and D. Simberloff. 1996. Extinction by hybridization and introgression. Annual Review of Ecology and Systematics 27(1): 83–109.
   Google Scholar
• Shepard, B. B., B. E. May, and W. Urie. 2005. Status and conservation of Westslope Cutthroat Trout within the western United States. North American Journal of Fisheries Management 25:1426–1440.
   Web of Science ®Google Scholar
• Vilà, C., and R. K. Wayne. 1999. Hybridization between wolves and dogs. Conservation Biology 13:195–198.
   Web of Science ®Google Scholar