Genetic diversity in a minicore collection of Cicer accessions using amplified fragment length polymorphism (AFLP)

References

• Altukhov UP. 2006. Intraspecific genetic diversity: monitoring, conservation, and management. New York (NY): Springer-Verlag Berlin Heidelberg.
   Google Scholar
• Berger J, Abbo S, Turner NC. 2003. Ecogeography of annual wild Cicer species: the poor state of the world collection. Crop Sci. 43:1076–1090.
   Web of Science ®Google Scholar
• Brugmans B, Van Der Hulst RG, Visser RG, Lindhout P, Van Eck HJ. 2003. A new and versatile method for the successful conversion of AFLP markers into simple single locus markers. Nucleic Acids Res. 31:55.
   PubMed Web of Science ®Google Scholar
• Choumane W, Winter P, Weigand F, Kahl G. 2000. Conservation and variability of sequence-tagged microsatellite sites (STMSs) from chickpea (Cicer aerietinum L.) within the genus Cicer. Theor Appl Genet. 101:269–278.
   Web of Science ®Google Scholar
• Collard BCY, Pang ECK, Ades PK, Taylor PWJ. 2003. Preliminary investigation of QTLs associated with seedling resistance to ascochyta blight from Cicer echinospermum, a wild relative of chickpea. Theor Appl Genet. 107:719–729.
   PubMed Web of Science ®Google Scholar
• Dellaporta SL, Wood J, Hicks JB. 1983. A plant DNA minipreparation: Version II. Plant Mol Biol Rep. 1:19–21.
   Google Scholar
• Doolittle WF, Zhaxybayeva O. 2009. On the origin of prokaryotic species. Genome Res. 19:744–756.
   PubMed Web of Science ®Google Scholar
• Excoffier L, Smouse P, Quattro J. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics. 131:479–491.
   PubMed Web of Science ®Google Scholar
• Faqih Ahmadani A, Hosseini SJ, Qasemi SA. 2014. Genetic diversity and population structure of Liza klunzingeri from the NorthernPersian Gulf based on AFLP analysis. Jpg. 17:27–36.
   Google Scholar
• Hugh W, Kusukawa N. 1997. Agarose-based system for separation of short tandem repeat loci. Bio Tech. 22:976–980.
   Google Scholar
• Jain S, Jain RK, McCouch SR. 2004. Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers. Theor Appl Genet. 109:965–977.
   PubMed Web of Science ®Google Scholar
• Jamsari A, Nitz I, Reamon-Buttner SM, Jung C. 2004. BAC-derived diagnostic markers for sex determination in asparagus. Theor Appl Genet. 108:1140–1146.
   PubMed Web of Science ®Google Scholar
• Kaga A, Tomooka N, Hosaka K, Kamijima O. 1996. Species relationship in the subgenus Ceratotropis (genus Vigna) as revealed by RAPD analysis. Euphytcia. 88:17–24.
   Web of Science ®Google Scholar
• Karp A. 2002. The New Genetic Era: Will it help us in managing genetic diversity? In: Engels JMM, Ramanatha Rao V, Brown ADH, Jackson MT, editors. Managing plant genetic diversity. Rome: IPGRI; p. 43–56.
   Google Scholar
• Kazan K, Muehlbauer FJ. 1991. Allozyme variation and phylogeny in annual species of Cicer (Leguminosae). Plant Syst Evol. 175:11–21.
   Web of Science ®Google Scholar
• Kovach W 1999. MVSP: A Multivariate Statistical Package for Windows, ver. 3.1. Kovach Computing Services Pentraeth Wales: UK.
   Google Scholar
• Krutovskii KV, Vollmer SS, Sorensen FC, Adams WT, Knapp SJ, Strauss SH. 1998. RAPD genome maps of Douglas-fir. J Hered. 89:197–205.
   Web of Science ®Google Scholar
• Ladizinsky G, Adler A. 1976. The origin of chickpea (Cicer arietinum L.). Euphytica. 25:211–217.
   Web of Science ®Google Scholar
• Laurentin HE, Karlovsky P. 2006. Genetic relationship and diversity in a sesame (Sesamum indicum L.) germplasm collection using amplified fragment length polymorphism (AFLP). BMC Genet [Internet]. [cited 2006 Jul 7]; 10. Available from http://www.biomedcentral.com/1471-2156/7/10
   PubMed Web of Science ®Google Scholar
• Lewontin RC. 1972. The apportionment of human diversity. Evol Biol. 6:381–398.
   Google Scholar
• Lynch M, Milligan BG. 1994. Analysis of population genetic structure with RAPD markers. Mol Ecol. 3:91–99.
   PubMed Web of Science ®Google Scholar
• Meksem K, Ruben E, Hyten D, Triwitayakorn K, Lightfoot DA. 2001. Conversion of AFLP bands into high-throughput DNA markers. Mol Genet Genomics. 265:207–214.
   PubMed Web of Science ®Google Scholar
• Nguyen TT, Taylor PWJ, Redden RJ, Ford R. 2004. Genetic diversity estimates in Cicer using AFLP analysis. Plant Breed. 123:173–179.
   Web of Science ®Google Scholar
• Peakall R, Smouse PE. 2006. GenAlEx 6: Genetic analysis in excel. Population genetic software for teaching and research. Mol Ecol Notes. 6:288–295.
   Web of Science ®Google Scholar
• Peakall R, Smouse PE. 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics. 28:2537–2539.
   PubMed Web of Science ®Google Scholar
• Pecina-Quintero V, Anaya-Lópeza JL, Núñez-Colín CA, Zamarripa-Colmenerob A, Montes-Garcíac N, Solís-Bonilla JL. 2013. Assessing the genetic diversity of castor bean from Chiapas, México using SSR and AFLP markers. Ind Crops Prod. 41:134–143.
   Web of Science ®Google Scholar
• Prevost A, Wilkinson MJ. 1999. A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. TAG Theor Appl Genet. 98:107–112.
   Web of Science ®Google Scholar
• Redden B, Furman BJ, Upadhyaya HD, Pundir RPS, Gowda CLL, Coyne CJ, Enneking D, Yadav SS, Redden RJ, Chen W, Sharma B. 2007. Chickpea Breeding and Management. Wallingford: CABI. Chapter 17, Biodiversity Management in Chickpea; p. 355–368.
   Google Scholar
• Roden SE, Dutton PH, Morin PA. 2009. AFLP fragment isolation technique as a method to produce random sequences for single nucleotide polymorphism discovery in the green turtle, Chelonia mydas. J Hered. 100:390–393.
   PubMed Web of Science ®Google Scholar
• Rohlf FJ 1998. NTSYS-pc: Numerical taxonomy and multivariate analysis system, version 2.02. Exter Software, Setauket, New York. [Internet]. [cited 2004 May 14];8. Available from: http:// www.exetersoftware.com/downloads/ntsysguide21.pdf
   Google Scholar
• Roldan-Ruiz I, Dendauw J, VanBockstaele E, Depicker A, De Loose M. 2000. AFLP markers reveal high polymorphic rates in ryegrasses (Lolium spp. Mol Breeding. 6:125–134.
   Web of Science ®Google Scholar
• Saeed A, Darvishzadeh R, Hovsepyan H, Asatryan A. 2010. Tolerance to freezing stress in Cicer accessions under controlled and field conditions. AFR J Biotechnol. 9:2618–2626.
   Google Scholar
• Saeed A, Hovsepyan H, Darvishzadeh R, Imtiaz M, Panguluri SK, Nazaryan R. 2011. Genetic diversity of Iranian accessions, improved lines of chickpea (Cicer arietinum L.) and their wild relatives by using simple sequence repeats. Plant Mol Biol Rep. 29:848–858.
   Web of Science ®Google Scholar
• Silva AS, Oliveira EJ, Haddad F, Jesus ON, Oliveira SAS, Costa MAPC. 2013. Molecular fingerprinting of Fusarium oxysporum f. sp. passiflorae isolates using AFLP markers. Sci Agric. 70:108–115.
   Web of Science ®Google Scholar
• Simon CJ, Muehlbauer FJ. 1997. Construction of a chickpea linkage map and its comparison with maps of pea and lentil. J Hered. 38:115–119.
   Google Scholar
• Singh KB, Ocampo B. 1997. Exploitation of wild Cicer species for yield improvement in chickpea. Theor Appl Genet. 95:418–423.
   Web of Science ®Google Scholar
• Singh R, Singhal V, Randhawa GJ. 2008. Molecular analysis of chickpea (Cicer arietinum L) cultivars using AFLP and STMS markers. J Plant Biochem Biotec. 17:167–171.
   Web of Science ®Google Scholar
• Sudupak MA, Akkaya MS, Kence A. 2004. Genetic relationships among perennial and annual Cicer species growing in Turkey assessed by AFLP fingerprinting. Theor Appl Genet. 109:937–944.
   Web of Science ®Google Scholar
• Udupa SM, Baum M. 2001. High mutation rate and mutational bias at (TAA)n microsatellite loci in chickpea (Cicer arietinum L.). Mol Gen Genom. 265:1097–1103.
   PubMed Web of Science ®Google Scholar
• Upadhyaya HD, Dwivedi SL, Baum M, Varshney RK, Udupa SM, Gowda CLL, Hoisington D, Singh D. 2008. Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.). BMC Plant Biol. 8:106.
   PubMed Web of Science ®Google Scholar
• Varshney RK, Chabane K, Hendre PS, Aggarwal RK, Graner A. 2007. Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys. Plant Science. 173:638–649.
   Web of Science ®Google Scholar
• Vos P, Hogers R, Bleeker M, Reijans M, Van De Lee T, Hornes M, Friters A, Pot J, Paleman J, Kuiper M, Zabeau M. 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23:4407–4414.
   PubMed Web of Science ®Google Scholar
• Wang K, Zhou Y, Liu H, Cheng K, Mao J, Wang F, Liu W, Ye M, Zhao ZK, Zou H. 2015. Proteomic analysis of protein methylation in the yeast Saccharomyces cerevisiae. J Proteomics. 114:226–233.
   PubMed Web of Science ®Google Scholar
• Yao Z, Barrick J, Weinberg Z, Neph S, Breaker R, Tompa M, Ruzzo W. 2007. Computational pipeline for high-throughput discovery of cis-regulatory noncoding RNA in prokaryotes. PLoS Comput Biol Internet. [cited 2007 Jul 6]; 3. Available from http://www.ncbi. nlm.nih.gov/pmc/articles/PMC1913097/pdf/pcbi.0030126.pdf
   Google Scholar
• Zhang B, Yu Q, Jia C, Wang Y, Xiao C, Dong Y, Xu N, Wang L, Li M. 2015. The actin-related protein Sac1 is required for morphogenesis and cell wall integrity in Candida albicans. Fungal Genet Biol. 81:261–270.
   PubMed Web of Science ®Google Scholar