191
Views
0
CrossRef citations to date
0
Altmetric
Research Article

Response of microbial community diversity and subsoil properties to cow manure amendment in mollisols

, , , &
Pages 785-802 | Received 01 Apr 2021, Accepted 25 Jan 2022, Published online: 09 Feb 2022

References

  • Ahn JH, Song J, Kim BY, Kim MS, Joa JH, Weon HY. 2012. Characterization of the bacterial and archaeal communities in rice field soils subjected to long-term fertilization practices. J Microbiol. 50:754–765.
  • Baghdadi A, Halim RA, Ghasemzadeh A, Ramlan MF, Sakimin SZ. 2018. Impact of organic and inorganic fertilizers on yield and quality of silage corn in inter cropped system with soybean. Peer J. 6:e26905v1.
  • Bao S. 2010. Soil agrochemical analysis. third ed. Beijing: China Agricultural Press.
  • Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK. 2010. QIIME allows analysis of high-through put community sequencing data. Nat Methods. 7:335–336.
  • Chen QL, Ding J, Zhu D, Hu HW, Delgado-Baquerizo M, Ma YB, He JZ, Zhu YG. 2019. Rare microbial taxa as the major drivers of ecosystem multifunctionality in long-term fertilized soils. Soil Biol Biochem. 141:107686.
  • Comin JJ, Loss A, Da Veiga M, Guardini R, Schmitt DE, De Oliveira PAV, Filho PB, Couto RR, Benendet L, Júnior VM, et al. 2013. Physical properties and organic carbon content of a typic Hapludult soil fertilised with pig slurry and pig litter in a no-tillage system. Soil Res. 51:459–470.
  • Cotching WE, Hawkins K, Sparrow LA, McCorkell BE, Rowley W. 2002. Crop yields and soil properties on eroded slopes of red ferrosols in Northwest Tasmania. Soil Res. 40:625–642.
  • Dai XQ, Yuan Y, Wang HM. 2016. Changes of anaerobic to aerobic conditions but not of crop type induced bulk soil microbial community variation in the initial conversion of paddy soils to drained soils. Catena. 147:578–585.
  • Dean R, Van Kan JAL, Pretorius ZA, Hammond-Kosack KE, Di Pietro A, Spanu PD. 2012. The top 10 fungal pathogens in molecular plant pathology. Mol Plant Patholol. 13:414–430.
  • Duan X, Xie Y, Qu T, Lu H. 2011. Effects of soil erosion on long-term soil productivity in the black soil region of northeastern China. Catena. 87:268–275.
  • Edgar RC. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 26:2460–2461.
  • Eisenhauer N, Lanoue A, Strecker T, Scheu S, Steinauer K, Thakur MP. 2017. Root biomass and exudates link plant diversity with soil bacterial and fungal biomass. Sci Rep. 7:44641.
  • Fierer N, Bradford MA, Jackson RB. 2007. Toward an ecological classification of soil bacteria. Ecology. 88:1354–1364.
  • Francioli D, Schulz E, Lentendu G, Wubet T, Buscot F, Reitz T. 2016. Mineral vs. organic amendments: microbial community structure, activity and abundance of agriculturally relevant microbes are driven by long-term fertilization strategies. Front Microbiol. 7:1446.
  • Han XZ, Li N. 2018. Research progress of black soil in northeast China. Scientia Geographica Sinica. 38:1032–1041. doi:10.13249/j.cnki.sgs.2018.07.004
  • Hermans SM, Buckley HL, Case BS, Curran-Cournane F, Taylor M, Lear G. 2017. Bacteria as emerging indicators of soil condition. Appl Environ Microbiol. 83:02826.
  • Hu J, Wu JG, Qu XJ. 2018. Decomposition characteristics of organic materials and their effects on labile and recalcitrant organic carbon fractions in a semi-arid soil under plastic mulch and drip irrigation. J Arid Land. 10:115–128.
  • Hu J, Wu JG, Qu XJ. 2019. Effects of organic wastes on labile organic carbon in semiarid soil under plastic mulched drip irrigation. Arch Agron Soil Sci. 65:1873–1884.
  • Innerebner G, Knief C, Vorholt JA. 2011. Protection of Arabidopsis thaliana against leaf-pathogenic Pseudomonas syringae by Sphingomonas strains in a controlled model system. Appl Environ Microb. 77:3202–3210.
  • Islam MT, Hashidoko Y, Deora A, Ito T, Tahara S. 2005. Suppression of damping-off disease in host plants by the rhizoplane bacterium Lysobacter sp. strain sb-k88 is linked to plant colonization and antibiosis against soilborne peronosporomycetes. Appl Environ Microbiol. 71:3786–3796.
  • Khetmalas MB, Egger KN, Massicotte HB, Tackaberry LE, Clapperton MJ. 2002. Bacterial diversity with subalpine fir (Abies lasiocarpa) ectomycorrhizae following wildfire and salvage-logging in central British Columbia. Can J Microbiol. 48:611–662.
  • Kumar U, Shahid M, Tripathi R, Mohanty S, Kumar A, Bhattacharyya P, Lal B, Gautam P, Raja R, Panda BB, et al. 2017. Variation of functional diversity of soil microbial community in sub-humid tropical rice-rice cropping system under long-term organic and inorganic fertilization. Ecol Indic. 73:536–543.
  • Larney FJ, Akinremi OO, Lemke RL, Klaassen VE, Janzen HH. 2003. Crop response to topsoil replacement depth and organic amendment on abandoned natural gas well sites. Can J Soil Sci. 83:415–423.
  • Lazcano C, Gomez-Brandon M, Revilla P, Domínguez J. 2012. Short-term effects of organic and inorganic fertilizers on soil microbial community structure and function. Biol Fert Soils. 49:723–733.
  • Li F, Chen L, Zhang J, Yin J, Huang S. 2017. Bacterial community structure after long-term organic and inorganic fertilization reveals important associations between soil nutrients and specific taxa involved in nutrient transformations. Front Microbiol. 8:187.
  • Li Z, Huang J, Zeng G, Nie X, Ma W, Yu W, Guo W, Zhang J. 2013. Effect of erosion on productivity in subtropical redsoil hilly region: a multi-scale spatio-temporal study by simulated rainfall. Plos One. 8:77838.
  • Liu H, Pan FJ, Han XZ. 2019. Response of soil fungal community structure to long-term continuous soybean cropping. Front Microbiol. 9:1–13.
  • Liu JL, Dang P, Gao Y, Zhu HL, Zhu HN, Zhao F, Zhao Z. 2018. Effects of tree species and soil properties on the composition and diversity of the soil bacterial community following afforestation. Forest Ecol Manag. 427:342–349.
  • Liu S, Zhang Y, Zong Y, Hu ZQ, Wu S, Zhou J, Jin YG, Zou JW. 2016. Response of soil carbon dioxide fluxes, soil organic carbon and microbial biomass carbon to biochar amendment: a meta-analysis. Gcb Bioenergy. 8:392–406.
  • Lynd LR, Weimer PJ, Van-Zyl WH, Pretorius IS. 2002. Microbial cellulose utilization: fundamentals and biotechnology. Microbiol Mol Biol. 66:506–577.
  • Magoč T, Salzberg SL. 2011. Flash: fast length adjustment of short reads to improve genome assemblies. Bioinformatics. 27:2957–2963.
  • Martin M. 2011. Cutadapt removes adapter sequences from high-through put sequencing reads. EMBnet J. 17:10–12.
  • Martins DC, De Resende AV, Galvão JCC, Simão EP, Ferreira JPC, Almeida GO. 2017. Organomineral phosphorus fertilization in the production of corn, soybean and bean cultivated in succession. Am J Plant Sci. 8:2407–2421.
  • Miao SJ, Shi H, Wang GH, Jin J, Liu JD, Zhou KQ, Sui YY, Liu XB. 2013. Seven years of repeated cattle manure addition to eroded Chinese Mollisols increase low-molecular-weight organic acids in soil solution. Plant Soil. 369:577–584.
  • Mori H, Maruyama F, Kato H, Toyoda A, Dozono A, Ohtsubo Y. 2014. Design and experimental application of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify eukaryoticrRNA genes. DNA Res. 21:217–227.
  • National Bureau of Statistics of China. 2016. China statistical yearbook 2015.
  • Nemergut DR, Cleveland CC, Wieder WR. 2010. Plot-scale manipulations of organic matter inputs to soils correlate with shifts in microbial community composition in a lowland tropical rain forest. Soil Biol Biochem. 42:2153–2160.
  • Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW. 2012. Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen dothideomycetes fungi. Plos Pathog. 8:1003037.
  • Purahong W, Wubet T, Lentendu G, Schloter M, Pecyna MJ, Kapturska D, Hofrichter M, Krüger D, Buscot F. 2016. Life in leaf litter: novelinsights into community dynamics of bacteria and fungi during litter decomposition. Mol Ecol. 25:4059–4074.
  • Reider CR, Herdman WR, Drinkwater LE, Janke R. 2000. Yields and nutrient budgets under composts, raw dairy manure and mineral fertilizer. Compost Sci. 8:328–339.
  • Romero E, Plaza C, Senesi N, Nogales R, Polo A. 2007. Humic acid-like fractions in raw and vermicomposted winery and distillery wastes. Geoderma. 139:397–406.
  • Saleem M, Hu J, Jousset A. 2019. More than the sum of its parts: microbiome biodiversity as a driver of plant growth and soil health. Annu Rev Ecol Evol S. 50:6.1–6.24.
  • Su J, Ding L, Xue K, Yao H, Quensen J, Bai S, Wei W, Wu J, Zhou J, Tiedje JM, et al. 2015. Long-term balanced fertilization increases the soil microbial functional diversity in a phosphorus-limited paddy soil. Molecular Ecology. 24:136–150.
  • Sui Y, Liu X, Jin J, Zhang S, Zhang X, Herbert SJ. 2009. Differentiating the early impacts of topsoil removal and soil amendments on crop performance/productivity of corn and soybean in eroded farmland of Chinese mollisols. Field Crops Research. 111(3):276–283.
  • Sui YY, Jin J, Liu XB, Zhang XY, Li YS, Zhou KQ, Wang GH, Di GL, Herbert SJ. 2017. Soil carbon sequestration and crop yield in response to application of chemical fertilizer combined with cattle manure to an artificially eroded Phaeozem. Arch Agron Soil Sci. 63(11):1510–1522.
  • Sun R, Dsouza M, Gilbert JA, Guo X, Wang D, Guo Z, Ni Y, Chu H. 2016. Fungal community composition in soils subjected to long-term chemical fertilization is most influenced by the type of organic matter. Environ Microbiol. 18:5137–5150.
  • Sun RB, Zhang XX, Guo XS, Wang DZ, Chu HY. 2015. Bacterial diversity in soils subjected to long-term chemical fertilization can be more stably maintained with the addition of livestock manure than wheat straw. Soil Biol Biochem. 88:9–18.
  • Taketani RG, Lima AB, Da CJE, Teixeira WG, Tiedje JM, Tsai SM. 2013. Bacterial community composition of anthropogenic biochar and Amazonian anthrosols assessed by 16SrRNAgene454 pyrosequencing. Anton Leeuw Int J G. 104:233–242.
  • Tedersoo L, Smith EM. 2013. Lineages of ectomycorrhizal fungi revisited: foraging strategies and novel lineages revealed by sequences from below ground. Fungal Biol Rev. 27:83–99.
  • Wachowska U, Irzykowski W, Jędryczka M, Głowacka K. 2013. Biological control of winter wheat pathogens with the use of antagonistic sphingomonas bacteria under greenhouse conditions. Biocontrol Sci Techn. 23:1110–1122.
  • Wang J, Rhodes G, Huang Q, Shen Q. 2018. Plant growth stages and fertilization regimes drive soil fungal community compositions in a wheat-rice rotation system. Biol Fert Soils. 54:731–742.
  • Wang Y, Ji H, Gao C. 2015. Differential responses of soil bacterial taxa to long-term P, N, and organic manure application. J Soils Sediments. 16:1046–1058.
  • Wang Z, Liu L, Chen Q, Wen X, Liao Y. 2016. Conservation tillage increases soil bacterial diversity in the dryland of northern China. Agron Sustain Dev. 36:28.
  • Ward NL. 2009. Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Appl Environ Microbiol. 75:2046–2056.
  • Wei D, Kuang E, Chi F, Zhang J, Guo W. 2016. Status and protection strategy of black soil resources in Northeast of China. Heilongjiang Agricultural Sciences. 16:158–161.
  • Wu W, Wu J, Liu X, Chen X, Wu Y, Yu S. 2017. Inorganic phosphorus fertilizer ameliorates maize growth by reducing metal uptake, improving soil enzyme activity and microbial community structure. Ecotox Environ Safe. 143:322–329.
  • Yan Y, Kuramae EE, Hollander MD, Klinkhamer PGL, Veen JAV. 2017. Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere. Isme J. 11:56–66.
  • Yao Q, Liu JJ, Yu ZH, Li YS, Jin J, Liu XB, Wang GH. 2017. Three years of biochar amendment alters soil physiochemical properties and fungal community composition in a black soil of northeast China. Soil Biol Biochem. 110:56–67.
  • Zhou K, Liu X, Zhang X, Sui Y, Herbert SJ, Xia Y. 2012. Corn root growth and nutrient accumulation improved by five years of repeated cattle manure addition to eroded Chinese Mollisols. Can J Soil Sci. 92:521–527.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.