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SIL Proceedings, 1922-2010
Internationale Vereinigung für Theoretische und Angewandte Limnologie: Verhandlungen
Volume 27, 2000 - Issue 5
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Original Articles

A phylogenetic and chemotaxonomic view of microbial diversity and natural community structure

Pages 3243-3247 | Published online: 01 Dec 2017

References

  • Collins, M. D. & Jones, D., 1981: Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implications. — Microbiol. Rev. 45: 316–354.
  • Hiraishi, A., 1989: Isoprenoid quinone profiles for classifying and identifying microbial populations in the environment. — In: Hattori, T., Ishida, Y., Maruyama, Y., Morita, R. Y. & Uchida, A. (eds): Recent Advances in Microbial Ecology: 663–668. — Japan Scientific Societies Press, Tokyo.
  • Hiraishi, A., Ueda, Y., Ishihara, J. & Mori, T., 1996: Comparative lipoquinone analysis of influent sewage and activated sludge by high-performance liquid chromatography and photodiode array detection. — J. Gen. Appl. Microbiol. 42: 457–469.
  • Hiraishi, A., Ueda, Y. & Ishihara, J., 1998a: Quinone profiling of bacterial communities in natural and synthetic sewage activated sludge for enhanced phosphate removal. — Appl. Environ. Microbiol. 64: 992–998.
  • Hiraishi, A., Ueda, Y. & Ishihara, J., 1998b: Biomarker and molecular approaches to the microbial community analysis of activated sludge. — In: Proceedings of the International Symposium of the COE Project on Establishment and Evaluation of Advanced Water Treatment Technology Using Functions of Complex Microbial Community: 48–57. — The University of Tokyo, Tokyo, Japan.
  • Hiraishi, A., Umezawa, T., Yamamoto, H., Maki, Y. & Kato, K., 1999: Changes in quinone profiles of hot spring microbial mats with a thermal gradient. — Appl. Environ. Microbiol. 65: 198–205.
  • Hugenholtz, P., Pitulle, C., Hershberger, K. L. R. & Pace, N. R., 1998: Novel division level bacterial diversity in a Yellowstone hot spring. — J. Bacteriol. 180: 366–376.
  • Iwasaki, M. & Hiraishi, A., 1998: A new approach to numerical analyses of microbial quinone profiles in the environment. — Microbes Environ. 13: 67–76.
  • Kimura, M., 1980: A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences. — J. Mol. Evol. 16: 111–120.
  • Pace, N. R., 1997: A molecular view of microbial diversity and the biosphere. — Science 276: 734–740.
  • Saitou, N. & Nei, M., 1987: The neighbor—joining method: a new method for reconstructing phylogenetic trees. — Mol. Biol. Evol. 4: 406–425.
  • Thompson, J. D., Higgins, D. G. & Gibson, T. J., 1994: Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions—specific gap penalties and weight matrix choice. — Nucleic Acids Res. 22: 4673–4680.
  • Woese, C. R., 1987: Bacterial evolution. — Microbiol. Rev. 51: 221–271.
  • Woese, C. R., Kandler, O. & Wheels, M. L., 1990: Toward a natural system of organisms: proposals for the domains Archaea, Bacteria, and Eucarya. — Proc. Natl. Acad. Sci. USA 87: 4576–4579.
  • Yamamoto, H., Hiraishi, A., Maki, Y., Kato, K. & Shimizu, A., 1998: Phylogenetic evidence for the existence of novel thermophilic bacteria in hot spring sulfur-turf microbial mats in Japan. — Appl. Environ. Microbiol. 64: 1680– 1689.

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