125
Views
3
CrossRef citations to date
0
Altmetric
Bryological Notes

Microsatellite primers for the cryptic species of the moss Hamatocaulis vernicosus and methods for their quick barcoding

ORCID Icon, & ORCID Icon

References

  • Doyle, J.J. & Doyle, J.L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, 19: 11–5.
  • Drag, L., Košnar, J. & Čížek, L. 2013. Development and characterization of ten polymorphic microsatellite loci for the Great Capricorn beetle (Cerambyx cerdo) (Coleoptera: Cerambycidae). Conservation Genetics Resources, 5: 907–9. doi: 10.1007/s12686-013-9930-8
  • Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41: 95–8.
  • Hedenäs, L. & Eldenäs, P. 2007. Cryptic speciation, habitat differentiation, and geography in Hamatocaulis vernicosus (Calliergonaceae, Bryophyta). Plant Systematics and Evolution, 268: 131–45. doi: 10.1007/s00606-007-0529-y
  • Hedenäs, L., Bisang, I. & Schnyder, N. 2003. The distribution of bryophytes in Switzerland and Liechtenstein IV. Hamatocaulis and Pseudocalliergon. Botanica Helvetica, 113: 111–23.
  • Hedenäs, L., Oliván, G. & Eldenäs, P. 2005. Phylogeny of the Calliergonaceae (Bryophyta) based on molecular and morphological data. Plant Systematics and Evolution, 252: 49–61. doi: 10.1007/s00606-004-0281-5
  • Holá, E., Košnar, J. & Kučera, J. 2015. Comparison of genetic structure of epixylic liverwort Crossocalyx hellerianus between central European and Fennoscandian populations. PLoS ONE, 10(7): e0133134. doi: 10.1371/journal.pone.0133134
  • Ignatov, M.S. & Ignatova, E.A. 2004. Flora mkhov srednei chasti evropeiskoi Rossii. Tom 2. Fontinalaceae—Amblystegiaceae. Arctoa, 11(Supplement 2): 609–960.
  • Johnson, M.G. & Shaw, A.J. 2015. Genetic diversity, sexual condition, and microhabitat preference determine mating patterns in Sphagnum (Sphagnaceae) peat-mosses. Biological Journal of the Linnean Society, 115: 96–113. doi: 10.1111/bij.12497
  • Kophimai, Y., Cornejo, C., Peintinger, M., Bergamini, A. & Scheidegger, C. 2011. Characterization of nuclear microsatellite loci in the calcareous fen specialist Scorpidium cossonii (Calliergonaceae). American Journal of Botany, 98(10): e290–2. doi: 10.3732/ajb.1100144
  • Koressaar, T., Jõers, K. & Remm, M. 2007. Enhancements and modifications of primer design program Primer3. Bioinformatics, 23: 1289–91. doi: 10.1093/bioinformatics/btm091
  • Mikulášková, E., Veleba, A., Šmerda, J., Knoll, A. & Hájek, M. 2017. Microsatellite variation in three calcium-tolerant species of peat moss detected specific genotypes of Sphagnum warnstorfii on magnesium-rich bedrock. Preslia, 89: 101–14. doi: 10.23855/preslia.2017.101
  • Nunome, T., Negoro, S., Miyatake, K., Yamaguchi, H. & Fukuoka, H. 2006. A protocol for the construction of microsatellite enriched genomic library. Plant Molecular Biology Reporter, 24: 305–12.
  • Pandey, S., Sharma, V. & Alam, A. 2016. Potential of microsatellites markers for the genetic analysis of bryophytes. Notulae Scientia Biologicae, 8(1): 37–46. doi: 10.15835/nsb.8.1.9748
  • Sawicki, J., Kwasniewski, M., Szczecinska, M., Chwialkowska, K., Milewicz, M. & Plášek, V. 2012. Isolation and characterization of Simple Sequence Repeats (SSR) Markers from the moss genus Orthotrichum using a small throughput pyrosequencing machine. International Journal of Molecular Sciences, 13(6): 7586–93. doi: 10.3390/ijms13067586
  • Schuelke, M. 2000. An economic method for the fluorescent labeling of PCR fragments. Nature Biotechnology, 18: 233–4. doi: 10.1038/72708
  • Shaw, A.J., Pokorny, L., Shaw, B., Ricca, M., Boles, S. & Szövényi, P. 2008. Genetic structure and genealogy in the Sphagnum subsecundum complex. Molecular Phylogenetics and Evolution, 49: 304–17. doi: 10.1016/j.ympev.2008.06.009
  • Štechová, T. & Kučera, J. 2007. The requirements of the rare moss, Hamatocaulis vernicosus (Calliergonaceae, Musci), in the Czech Republic in relation to vegetation, water chemistry and management. Biological Conservation, 135: 443–9. doi: 10.1016/j.biocon.2006.10.021
  • Štechová, T., Kučera, J. & Šmilauer, P. 2012. Factors affecting population size and vitality of Hamatocaulis vernicosus (Mitt.) Hedenäs (Calliergonaceae, Musci). Wetlands Ecology and Management, 20(4): 329–39. doi: 10.1007/s11273-012-9256-4
  • Untergasser, A., Cutcutache, I., Koressaar, T.Y.J., Faircloth, B.C., Remm, M. & Rozen, S.G. 2012. Primer3—new capabilities and interfaces. Nucleic Acids Research, 40: e115. doi: 10.1093/nar/gks596
  • Werner, O., Ros, R.M. & Guerra, J. 2002. Direct amplification and NaOH extraction: two rapid and simple methods for preparing bryophyte DNA for polymerase chain reaction (PCR). Journal of Bryology, 24(2): 127–31. doi: 10.1179/037366802125000980

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.