159
Views
16
CrossRef citations to date
0
Altmetric
GENETICS AND RESISTANCE

Identification of single-nucleotide polymorphisms linked to resistance gene Pc68 to crown rust in cultivated oat

, , , &
Pages 214-222 | Accepted 01 Mar 2006, Published online: 01 Apr 2010

References

  • Akhunov , E. , Goodyear , A. , Geng , S. , Qi , L. L. , Echalier , B. , Gill , B. S. , Miftahudin Gustafson , J. P. , Lazo , G. , Chao , S. , Anderson , O. D. , Linkiewicz , A. M. , Dubcovsky , J. , Rota , M. L. , Sorrells , M. E. , Zhang , D. , Nguyen , H. T. , Kalavacharia , V. , Hossain , K. , Kianian , S. F. , Peng , J. , Lapitan , N. L. V. , Gonzalez- Hernandez , J. L. , Anderson , J. A. , Choi , D.-W. , Close , T. J. , Dilbirligi , N. , Gill , K. S. , Walker-Simmons , M. K. , Steber , C. , McGuire , P. E. , Qualset , C. O. and Dvorak , J. 2003 . The organization and rate of evolution of wheat genomes are correlated with recombination rates along the chromosome arms . Genome Res. , 13 : 753 – 763 .
  • Altshuler , D. , Pollara , V. J. , Cowles , C. R. , Van Etten , W. J. , Baldwin , J. , Linton , L. and Lander , E. S. 2000 . A SNP map of the human genome generated by reduced representation shotgun sequencing . Nature (London) , 407 : 513 – 516 .
  • Blanc , G. , Barakat , A. , Guyot , R. , Cooke , R. and Delseny , M. 2000 . Extensive duplication and reshuffling in the Arabidopsis genome . Plant Cell , 12 : 1093 – 1102 .
  • British Columbia Ministry of Agriculture and Lands . 2006 . Cereal crop disease resistance ratings in pest panagement , Government of British Columbia : Ministry of Agriculture and Lands . [online], [accessed 20 May 2006]
  • Bush , A. L. and Wise , R. P. 1998 . High-resolution mapping adjacent to the Pc71 crown-rust resistance locus in hexaploid oat . Mol. Breed. , 4 : 13 – 21 .
  • Chen , W. 2000 . Molecular mapping of genes involved in carbohydrate metabolism and fluorescent AFLP-based tagging of QTL in tetraploid potato , Cologne, , Germany : University of Cologne . [online]. Inaugural dissertation, [accessed 20 May 2006]
  • Chong , J. 2000 . Inheritance of resistance to two Puccinia coronata isolates in a partial resistant oat line MN841801 . Acta Phytopathol. Entomol. Hung. , 35 : 37 – 40 .
  • Chong , J. and Zegeye , T. 2004 . Physiologic specialization of Puccinia coronata f. sp. avenae, the cause of oat crown rust, in Canada from 1999 to 2001 . Can. J. Plant Pathol. , 26 : 97 – 108 .
  • Chong , J. , Howes , N. K. , Brown , P. D. and Harder , D. E. 1994 . Identification of the stem rust resistance gene Pg9 and its association with crown rust resistance and endosperm proteins in 'Dumont' oat . Genome , 37 : 440 – 447 .
  • Chong , J. , Leonard , K. J. and Salmeron , J. J. 2000 . A North American system of nomenclature for Puccinia coronata f. sp. avenae . Plant Dis. , 84 : 580 – 585 .
  • Chong , J. , Reimer , E. , Somers , D. , Aung , T. and Penner , G. A. 2004 . Development of a sequence characterized amplified region marker for the crown rust resistance gene Pc94 in oat . Can. J. Plant Pathol. , 26 : 89 – 96 .
  • De Koeyer , D. L. , Orr , W. , Lybaert , A. , Deyl , J. , Chenier , C. , Tinker , N. , McElroy , A. , Chong , J. and Molnar , S. Scar markers linked to the Pc68 resistance allele are an effective tool for selection . Proceedings of the 6th International Oat Conference. Lincoln University . November 13-16 2000 , Lincoln, New Zealand. Edited by: Cross , R. J. pp. 138 – 141 . Christchurch, , New Zealand : New Zealand Institute for Crop and Food Research Limited .
  • De Koeyer , D. L. , Tinker , N. A. , Wight , C. P. , Deyl , J. , Burrows , V. D. , O'Donoughue , L. S. O. , Lybaert , A. , Molnar , S. J. , Armstrong , K. C. , Fedak , G. , Wesenberg , D. M. , Rossnagel , B. G. and McElroy , A. R. 2004 . A molecular linkage map with associated QTLs from a hulless x covered spring oat population . Theor. Appl. Genet. , 108 : 1285 – 1298 .
  • Harder , D. E. and Haber , S. 1992 . “ Oat science and technology ” . In Oat diseases and pathologic techniques , Edited by: Marshall , H. G. and Sorrells , M. E. 307 – 425 . Madison, Wisc. : American Society of Agronomists, Inc., and the Crop Science Society of America, Inc. .
  • Hittalmani , S. , Oarcim , A. , Mew , T. V. , Zeigler , R. S. and Huang , N. 2000 . Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice . Theor. Appl. Genet. , 100 : 1121 – 1128 .
  • Kanazin , V. , Talbert , H. , See , D. , DeCamp , P. , Nevo , E. and Blake , T. 2002 . Discovery and assay of single-nucleotide polymorphisms in barley (Hordeum vulgare) . Plant Mol. Biol. , 48 : 529 – 537 .
  • Kwok , P. Y. 2001 . Methods for genotyping single nucleotide poly morphisms . Annu. Rev. Genomics Hum. Genet. , 2 : 235 – 258 .
  • Lander , E. S. , Green , P. , Abrahamson , J. , Barlow , A. , Daly , M. J. , Lincoln , S. E. and Newburg , L. 1987 . Mapmaker: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations . Genomics , 1 : 174 – 181 .
  • Nasu , S. , Suzuki , J. , Ohta , R. , Hasegawa , K. , Yui , R. , Kitazawa , N. , Monna , L. and Minobe , Y. 2002 . Search for and analysis of single nucleotide polymorphisms (SNPs) in rice (Oryza sativa, Oryza rufipogon) and establishment of SNP markers . DNA Res. , 9 : 163 – 171 .
  • National Center for Biotechnology Information . 2006 . Blast [online], [accessed 26 May 2006]
  • O'Donoughue , L. S. , Chong , J. , Wight , C. P. , Fedak , G. and Molnar , S. J. 1996 . Localization of stem rust resistance genes and associated molecular markers in cultivated oat . Phyto pathology , 86 : 719 – 727 .
  • Penner , G. , Chong , J. , Wight , C. P. , Molnar , S. J. and Fedak , G. 1993 . Identification of an RAPD marker for the crown rust resistance gene Pc68 in oats . Genome , 36 : 818 – 820 .
  • Portyanko , V. A. , Hoffman , D. L. , Lee , M. and Holland , J. B. 2001 . A linkage map of hexaploid oat based on grass anchor DNA clones and its relationship to other oat maps . Genome , 44 : 249 – 265 .
  • Rafalski , J. A. 2002 . Novel genetic mapping tools in plants: SNPs and LD-based approaches . Plant Sci. , 162 : 329 – 333 .
  • Rooney , W. L. , Rines , H. W. and Phillips , R. L. 1994 . Identification of RFLP markers linked to crown rust resistance genes Pc91 and Pc92 in oat . Crop Sci. , 34 : 940 – 944 .
  • Rozen , S. and Skaletsky , H. J. 2000 . “ Bioinformatics methods and protocols: methods in molecular biology ” . In Primer3 on the WWW for general users and for biologist programmers , Edited by: Krawetz , S. and Misener , L. 365 – 386 . Totowa, N.J. : Human Press .
  • Schneider , K. , Weisshaar , B. , Borchardt , D. C. and Salamini , F. 2001 . SNP frequency and allelic haplotype structure of Beta vulgaris expressed genes . Mol. Breed. , 8 : 63 – 74 .
  • Silva , S. V. P. and Procunier , J. D. 1994 . “ Methods of gene technology ” . In Genomic fingerprinting using the PCR - random amplified polymorphic DNA technique , Edited by: Dale , J. W. and Sanders , P. G. Vol. 2 , 319 – 336 . Hampton Hill, Middlesex, , UK : JAI Press Ltd .
  • Singh , S. , Sidhu , J. S. , Huang , N. , Vikal , Y. , Li , Z. , Brar , D. S. , Dhaliwal , H. S. and Klush , G. S. 2001 . Pyramiding three bacterial blight resistance genes (xa5, xa13 and Xa21) using marker-assisted selection into rice cultivar PR106 . Theor. Appl. Genet. , 102 : 1011 – 1015 .
  • Snedecor , G. W. and Cochran , W. G. 1989 . Statistical methods , 8th ed. , Ames, Iowa : The Iowa State University Press .
  • Taillon-Miller , P. , Piernot , E. E. and Kwok , P.-Y. 1999 . Efficient approach to unique single-nucleotide polymorphism discovery . Genome Res. , 9 : 499 – 505 .
  • Wight , C. P. , Tinker , N. A. , Kianian , S. F. , Sorrells , M. E. , O'Donoughue , L. S. , Hoffman , D. L. , Groh , S. , Scoles , G. J. , Li , C. D. , Webster , F. H. , Phillips , R. L. , Rines , H. W. , Livingston , S. M. , Armstrong , K. C. , Fedak , G. and Molnar , S. J. 2003 . A molecular marker map in 'Kanata' x 'Ogle' hexaploid oat (Avena spp.) enhanced by additional markers and a robust framework . Genome , 46 : 28 – 47 .
  • Wight , C. P. , O'Donoughue , L. S. O. , Chong , J. , Tinker , N. A. and Molnar , S. J. 2004 . Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) . Mol. Breed. , 14 : 349 – 361 .
  • Zhu , S. and Kaeppler , H. F. 2003 . Identification of quantitative trait loci for resistance to crown rust in oat line MAM17-5 . Crop Sci. , 43 : 358 – 366 .
  • Zhu , T. , Shi , L. , Doyle , J. J. and Keim , P. 1995 . A single nuclear locus phylogeny of soybean based on DNA sequence . Theor. Appl. Genet. , 90 : 991 – 999 .
  • Zhu , Y. L. , Song , Q. J. , Hyten , D. L. , Tassell , C. P. V. , Matukumalli , L. K. , Grimm , D. R. , Hyatt , S. M. , Fickus , E. W. , Young , N. D. and Cregan , P. B. 2003 . Single-nucleotide polymorphisms in soybean . Genetics , 163 : 1123 – 1134 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.