171
Views
5
CrossRef citations to date
0
Altmetric
VIROLOGY

Molecular detection and identification of potato isolates of Tobacco rattle virus

&
Pages 271-279 | Accepted 07 Feb 2006, Published online: 01 Apr 2010

References

  • Angenent , G. C. , Linthorst , H. J. , van Belkum , A. F. , Cornelissen , B. J. and Bol , J. F. 1986 . RNA 2 of tobacco rattle virus strain TCM encodes an unexpected gene . Nucleic Acids Res. , 14 : 4673 – 4682 .
  • Angenent , G. C. , Posthumus , E. , Brederode , F. T. and Bol , J. F. 1989 . Genome structure of tobacco rattle virus strain PLB: further evidence on the occurrence of RNA recombination among tobraviruses . Virology , 171 : 271 – 274 .
  • Birnboim , H. C. and Doly , J. 1979 . A rapid alkaline extraction procedure for screening recombinant plasmid DNA . Nucleic Acids Res. , 7 : 1513 – 1523 .
  • Cornelissen , B. J. , Linthorst , H. J. , Brederode , F. T. and Bol , J. F. 1986 . Analysis of the genome structure of tobacco rattle virus strain PSG . Nucleic Acids Res. , 14 : 2157 – 2169 .
  • Crosslin , J. M. and Thomas , P. E. 1995 . Detection of tobacco rattle virus in tubers exhibiting symptoms of corky ringspot by polymerase chain reaction . Am. Potato J. , 72 : 605 – 609 .
  • Crosslin , J. M. , Thomas , P. E. and Brown , C. R. 1999 . Distribution of tobacco rattle virus in tubers of resistant and susceptible potatoes and systemic movement of virus into daughter plants . Am. J. Potato Res. , 76 : 191 – 197 .
  • Crosslin , J. M. , Thomas , P. E. and Hammond , C. R. 2003 . Genetic variability of genomic RNA 2 of four tobacco rattle tobra virus isolates from potato fields in the northwestern United States . Virus Res. , 96 : 99 – 105 .
  • De Boer , S. H. , Ward , L. J. , Li , X. and Chittaranjan , S. 1995 . Attenuation of PCR inhibition in the presence of plant compounds by addition of BLOTTO . Nucleic Acids Res. , 23 : 2567 – 2568 .
  • Hamilton , W. D. O. , Boccara , M. , Robinson , D. J. and Baulcombe , D. C. 1987 . The complete nucleotide sequence of tobacco rattle virus RNA-1 . J. Gen. Virol. , 68 : 2563 – 2575 .
  • Harrison , B. D. 1970 . Tobacco rattle virus. Commonwealth Mycological Institute (CMI) - Association of Applied Biologists (AAB) Descriptions of Plant Viruses, No. 12 , Kew, , UK : Commonwealth Mycological Institute .
  • Harrison , B. D. and Robinson , D. J. 1978 . The tobraviruses . Adv. Virus Res. , 23 : 25 – 77 .
  • Harrison , B. D. and Robinson , D. J. 1981 . “ Tobravirus ” . In Handbook of plant virus infections and comparative diagnosis , Edited by: Kurstak , E. 515 – 540 . Amsterdam, , Netherlands : Elsevier-North-Holland .
  • Harrison , B. D. and Robinson , D. J. 1982 . Genome reconstruction and nucleic acid hybridization as methods of identifying particle-deficient isolates of tobacco rattle virus in potato plants with stem-mottle disease . J. Virol. Methods , 5 : 255 – 265 .
  • Hernandez , C. , Mathis , A. , Brown , D. J. and Bol , J. F. 1995 . Sequence of RNA 2 of a nematode-transmissible isolate of tobacco rattle virus . J. Gen. Virol. , 76 : 2847 – 2851 .
  • Howard , R. J. , Dykstra , M. and Stace-Smith , R. Corky ring spot: a virus disease of potatoes new in Canada . Proceedings of the 12th Annual Meeting of the Prairie Potato Council. Held at the Bessborough Hotel . February 17-22 1984 , Saskatoon, Edmonton, Sask, Canada. Continued under Proceedings of the Annual Meeting of the Western Potato Council, by the Western Potato Council, Portage-la-Prairie, Man , pp. 27 – 31 . Available from the Alberta Government Library, Neil Crawford Centre Site, Room 101, 7000 113th Street, AB T6H 5T6
  • Jeffries , C. J. 1998 . Potato , Rome, , Italy : FAO . Food and Agriculture Organization of the United Nations - International Plant Genetic Resources Institute (FAO-IPGRI) Technical Guidelines for the Safe Movement of Germplasm, No. 19
  • Kawchuk , L. M. , Lynch , D. R. , Leggett , F. L. , Howard , R. J. and McDonald , J. G. 1997 . Detection and characterization of a Canadian tobacco rattle virus isolate using a PCR-based assay . Can. J. Plant Pathol. , 19 : 101 – 105 .
  • MacFarlane , S. A. 1996 . Rapid cloning of uncharacterised tobacco rattle virus isolates using long template (LT) PCR . J. Virol. Methods , 56 : 91 – 98 .
  • MacFarlane , S. A. , Vassilakos , N. and Brown , D. J. 1999 . Similarities in the genome organization of tobacco rattle virus and pea early-browning virus isolates that are transmitted by same vector nematode . J. Gen. Virol. , 80 : 273 – 276 .
  • Mojtahedi , H. and Santo , G. S. 1999 . Ecology of Paratrichodorus allius and its relationship to the corky ring-spot disease of potato in the Pacific Northwest . Am. J. Potato Res. , 76 : 273 – 280 .
  • Mojtahedi , H. , Crosslin , J. M. , Santo , G. S. , Brown , C. R. and Thomas , P. E. 2001 . Pathogenicity of Washington and Oregon isolates of tobacco rattle virus on potato . Am. J. Potato Res. , 78 : 183 – 190 .
  • Mumford , R. A. , Walsh , K. , Barker , I. and Boonham , N. 2000 . Detection of potato mop top virus and tobacco rattle virus using a multiplex real-time fluorescent reverse-transcription polymerase chain reaction assay . Phytopathology , 90 : 448 – 453 .
  • Myers , E. W. and Miller , W. 1988 . Optimal alignments in linear space . Comp. Appl. Biosci. , 4 : 11 – 17 .
  • Nicholas , K. B. and Nicholas , H. B. Jr. 1997 . GeneDoc: a tool for editing and annotating multiple sequence alignments [online]. Distributed by author, Available from
  • Pérez , E. E. , Weingartner , D. P. , Hiebert , E. and McSorley , R. 2000 . Tobacco rattle virus detection in potato tubers from northeast Florida by PCR and tissue blotting . Am. J. Potato Res. , 77 : 363 – 368 .
  • Robinson , D. J. 1989 . Tobacco rattle tobravirus: variation among strains and detection by cDNA probes . EPPO (Eur. Mediterr. Plant Prot. Organ.) Bull. , 19 : 619 – 623 .
  • Robinson , D. J. 1992 . Detection of tobacco rattle virus by reverse transcription and polymerase chain reaction . J. Virol. Methods , 40 : 57 – 66 .
  • Robinson , D. J. and Harrison , B. D. 1985 . Unequal variation in the two genome parts of tobraviruses and evidence for the existence of three separate viruses . J. Gen. Virol. , 66 : 171 – 176 .
  • Robinson , D. J. and Harrison , B. D. 1989 . Tobacco rattle virus , Commonwealth Mycological Institute (CMI) - Association of Applied Biologists (AAB) Descriptions of Plant Viruses, No. 346 Kew, , UK : Commonwealth Mycological Institute .
  • Robinson , D. J. and Legorburu , F. J. 1988 . Detection of tobacco rattle virus by spot hybridization , Annual Report for 1987 195 – 196 . Dundee, , U.K. : Scottish Crop Research Institute .
  • Sambrook , J. , Fritsch , E. F. and Maniatis , T. 1989 . Molecular cloning, a laboratory manual , 2nd ed. , Cold Spring Harbour, N.Y. : Cold Spring Harbor Laboratory Press .
  • Stace-Smith , R. and Frowd , J. A. 1983 . Tobacco rattle virus isolated from potato tubers in Saskatchewan . Can. J. Plant Pathol. , 5 : 211 – 212 .
  • Sudarshana , M. R. and Berger , P. H. 1998 . Nucleotide sequence of both genomic RNAs of a North American tobacco rattle virus isolate . Arch. Virol. , 143 : 1535 – 1544 .
  • Taylor , S. C. 1998 . “ Tobravirus isolation and RNA extraction ” . In Plant virology protocols - from virus isolation to transgenic resistance , Edited by: Foster , G. D. and Taylor , S. C. 115 – 121 . Totowa, N.J. : Humana Press .
  • Weidemann , H. L. 1995 . Detection of tobacco rattle virus in potato tubers and roots by polymerase chain reaction (PCR) . J. Phytopathol. , 143 : 455 – 458 .
  • Xu , H. , DeHaan , T.-L. and DeBoer , S. H. 2004 . Detection and confirmation of Potato mop-top virus in potatoes produced in the United States and Canada . Plant Dis. , 88 : 363 – 367 .
  • Xu , H. , Nie , J. and DeBoer , S. H. 2005 . Differentiation and molecular detection of Canadian necrotic strains of potato virus Y . Can. J. Plant Pathol. , 27 : 125 – 131 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.