Detection of Ralstonia solanacearum in ginger rhizomes by real-time PCR

References

• Alvarez , A. M. , Trotter , K. J. , Swafford , M. B. , Berestecky , J. M. , Yu , Q.-Y. , Ming , R. , Hepperly , P. and Zee , F. Characterization and detection of Ralstonia solanacearum strains causing bacterial wilt of ginger in Hawaii . Proceedings of the 3rd International Bacterial Wilt Symposium . February 2–8 2002 . pp. 90 South Africa : White Water . [online]. [Abstr.]. [modified on 23 October 2006].
   Google Scholar
• Alvarez , A. M. , Trotter , K. J. , Swafford , M. B. , Berestecky , J. M. , Yu , Q. , Ming , R. , Hepperly , P. R. and Zee , F. 2005 . “ Characterization and detection of Ralstonia solanacearum strains causing bacterial wilt of ginger in Hawaii ” . In Bacterial wilt disease and the Ralstonia solanacearum species complex , Edited by: Allen , C. , Prior , P. and Hayward , A. C. 471 – 477 . St. Paul, Minn : American Phytopathological Society .
   Google Scholar
• Buddenhagen , I. , Sequeira , L. and Kelman , A. 1962 . Designation of races in Pseudomonas solanacearum . Phytopathology , 52 : 726
   Web of Science ®Google Scholar
• Chantanaotan , S. 1982 . Studies on bacterial wilt or rhizome rot of ginger (Zingiber officinale Roscoe) , Bangkok, , Thailand : Kasetsart University . M.S. thesis
   Google Scholar
• Cook , D. , Barlow , E. and Sequeira , L. 1989 . Genetic diversity of Pseudomonas solanacearum : detection of restriction fragment length polymorphisms with DNA probes that specify virulence and the hypersensitive response . Mol. Plant-Microbe Interact. , 2 : 113 – 121 .
   Google Scholar
• Denny , T. and Hayward , A. C. 2001 . “ Ralstonia ” . In Laboratory guide for identification of plant pathogenic bacteria. , 3rd. ed. , Edited by: Schaad , N. W. , Jones , J. B. and Chun , W. 151 – 174 . St. Paul, Minn : American Phytopathology Society Press .
   Google Scholar
• Dittapongpitch , V. and Surat , S. 2003 . Detection of Ralstonia solanacearum in soil and weeds from commercial tomato fields using immunocapture and the polymerase chain reaction . J. Phytopathol. (Berlin) , 151 : 239 – 246 .
   Web of Science ®Google Scholar
• Elphinstone , J. G. , Hennesy , J. , Wilson , J. K. and Steed , D. E. 1996 . Sensitivity of different methods for the detection of Ralstonia solanacearum . EPPO (Eur. Mediterr. Plant Prot. Organ.) Bull. , 26 : 674 – 678 .
   Google Scholar
• Englebrecht , M. C. 1994 . Modification of a semi-selective medium for the isolation and quantification of Pseudomonas solanacearum . ACIAR Bact. Wilt Newsl. , 10 : 3 – 5 .
   Google Scholar
• Fegan , M. , Holoway , G. , Hayward , A. C. and Timmis , J. 1998 . “ Development of a diagnostic test based on the polymerase chain reaction (PCR) to identify strains of R. solanacearum exhibiting the biovar 2 genotype ” . In Bacterial wilt disease: molecular and ecological aspects Edited by: Prior , P. H. , Allen , C. and Elphinstone , J. G. 34 – 43 . Springer-Verlag, Berlin
   Google Scholar
• Granada , G. A. and Sequeira , L. 1983 . A new selective medium for Pseudomonas solanacearum . Plant Dis. , 67 : 1084 – 1088 .
   Google Scholar
• Hayward , A. C. 1964 . Characteristics of Pseudomonas solana cearum . J. Appl. Bacteriol. , 27 : 265 – 277 .
   Google Scholar
• Hayward , A. C. 1991 . Biology and epidemiology of bacterial wilt caused by Pseudomonas solanacearum . Annu. Rev. Phyto pathol. , 29 : 67 – 87 .
   Web of Science ®Google Scholar
• Hayward , A. C. 1994 . “ The hosts of Pseudomonas solanacearum ” . In Bacterial wilt: the disease and its causative agent Pseudomonas solanacearum , Edited by: Hayward , A. C. and Hartman , G. L. 9 – 23 . Wallingford, , UK : CAB International .
   Google Scholar
• He , L. Y. , Sequeira , L. and Kelman , A. 1983 . Characteristics of strains of Pseudomonas solanacearum from China . Plant Dis. , 67 : 1356 – 1361 .
   Google Scholar
• Ito , S. , Ushijima , Y. , Fujii , T. , Tanaka , S. , Kameya-Iwaki , M. , Yashiwaru , S. and Kishi , F. 1998 . Detection of viable cells of Ralstonia solanacearum in soil using a semiselective medium and a PCR technique . J. Phytopathol. (Berlin) , 146 : 369 – 384 .
   Web of Science ®Google Scholar
• Kelman , A. 1954 . The relationship of pathogenicity in Pseudomonas solanacearum to colony appearance on a tetrazolium medium . Phytopathology , 44 : 693 – 695 .
   Web of Science ®Google Scholar
• Kumar , A. , Anadaraj , M. and Sarma , Y. R. 2005 . “ Rhizome solarization and microwave treatment: ecofriendly methods for disinfecting ginger seed rhizomes ” . In Bacterial wilt disease and the Ralstonia solanacearum species complex , Edited by: Allen , C. , Prior , P. and Hayward , A. C. 185 – 195 . St. Paul, Minn : American Phytopathological Society .
   Google Scholar
• Lum , K. Y. 1973 . Cross inoculation studies of Pseudomonas solana cearum from ginger . MARDI Res. Bull. , 1 : 15 – 21 .
   Google Scholar
• Opina , N. , Tavner , F. , Holoway , G. , Wang , J.-F. , Li , T. H. , Maghirang , R. , Fegan , M. , Hayward , A. C. , Krishnapillai , V. , Hong , W. F. , Holloway , B. W. and Timmis , J. N. 1997 . A novel method for development of species and strain-specific DNA probes and PCR primers for identifying Burkholderia solanacearum (Pseudomonas solanacearum) . Asia Pac. J. Mol. Biol. Biotechnol. , 5 : 19 – 30 .
   Google Scholar
• Ozakman , M. and Schaad , N. W. 2003 . A real-time BIO-PCR assay for detection of Ralstonia solanacearum race 3, biovar 2, in asymptomatic potato tubers . Can. J. Plant Pathol. , 25 : 232 – 239 .
   Web of Science ®Google Scholar
• Poussier , S. , Vandewalle , P. and Luisetti , J. 1999 . Genetic diversity of African and worldwide strains of Ralstonia solana cearum as determined by PCR-restriction fragment length polymorphism analysis of the hrp gene region . Appl. Environ. Microbiol. , 65 : 2184 – 2194 .
   PubMedGoogle Scholar
• Poussier , S. , Trigalet-Demery , D. , Vandewalle , P. , Goffinet , B. , Luisetti , J. and Trigalet , A. 2000 . Genetic diversity of Ralstonia solanacearum as assessed by PCR-RFLP of the hrp gene region, AFLP and 16S rRNA sequence analysis, and identification of an African subdivision . Microbiology , 146 : 1679 – 1692 .
   PubMed Web of Science ®Google Scholar
• Schaad , N. W. and Frederick , R. D. 2002 . Real-time PCR and its application for rapid plant disease diagnostics . Can. J. Plant Pathol. , 24 : 250 – 258 .
   Web of Science ®Google Scholar
• Schaad , N. W. , Gaush , P. E. , Postnikova , E. and Frederick , R. D. 2000 . On-site one hour PCR diagnosis of bacterial diseases . Phytopathology , 90 : S69 [Abstr.]
   Google Scholar
• Schaad , N. W. , Opgenorth , D. and Gaush , P. E. 2002 . Real-time PCR for one-hour on-site diagnosis of Pierces's disease of grape in early season asymptomatic vines . Phytopathology , 92 : 721 – 728 .
   PubMed Web of Science ®Google Scholar
• Seal , S. E. 1998 . “ Molecular methods for detection and discrimination of Ralstonia solanacearum ” . In Bacterial wilt disease: molecular and ecological aspects Edited by: Prior , P. H. , Allen , C. and Elphinstone , J. G. 103 – 115 . Springer-Verlag, Berlin
   Google Scholar
• Seal , S. E. , Jackson , L. A. , Young , J. P. W. and Daniels , M. J. 1993 . Differentiation of Pseudomonas solanacearum, Pseudomonas syzygii, Pseudomonas pickettii and the blood disease bacterium by partial 16S rRNA sequencing: construction of oligonucleotide primers for sensitive detection by polymerase chain reaction . J. Gen. Microbiol. , 139 : 1587 – 1594 .
   PubMedGoogle Scholar
• Thammakijjawat , P. , Thaveechai , N. , Kositratana , W. , Chunwongse , J. , Frederick , R. D. and Schaad , N. W. 2001 . Genetic analysis of Ralstonia solanacearum strains from different hosts in Thailand using PCR-restriction fragment length polymorphism . Kasetsart J. (Nat. Sci.) , 35 : 397 – 408 .
   Google Scholar
• Thammakijjawat , P. , Thaveechai , N. , Kositratana , W. , Chunwongse , J. , Frederick , R. D. and Schaad , N. W. 2002 . Genetic variability of Ralstonia solanacearum strains from pepper (Capsicum annuum) in Thailand and their genetic relationship to strains from other hosts . Thai J. Agric. Sci. , 35 : 415 – 426 .
   Google Scholar
• Titatarn , V. 1986 . “ Bacterial wilt in Thailand ” . In Bacterial wilt disease in Asia and the South Pacific , Edited by: Persley , G. J. 65 – 67 . Canberra, , Australia : Australian Centre for International Agricultural Research . Proceedings No. 13
   Google Scholar
• Tsuchiya , K. , Yano , K. , Horita , M. , Morita , Y. , Kawada , Y. and d'Ursel , C. M. 2005 . “ Occurrence and epidemic adaptation of new strains of Ralstonia solanacearum associated with Zingi beraceae plants in the Japanese agro-egosystem in Japan ” . In Bacterial wilt disease and the Ralstonia solanacearum species complex , Edited by: Allen , C. , Prior , P. and Hayward , A. C. 463 – 469 . St. Paul, Minn : American Phytopathological Society .
   Google Scholar
• van der Wolf , J. M. , Vriend , S. G. C. , Kastelein , P. , Nijhuis , E. H. , Van Bekkum , P. J. and Van Vuurde , J. W. L. 2000 . Immuno fluorescence colony-staining (IFC) for detection and quantification of Ralstonia (Pseudomonas) solanacearum biovar 2 (race 3) in soil and verification of positive results by PCR and dilution plating . Eur. J. Plant Pathol. , 106 : 123 – 133 .
   Web of Science ®Google Scholar
• Vidaver , A. K. 1967 . Synthetic and complex media for rapid detection of fluorescence of phytopathogenic pseudomonads: effects of carbon sources . Appl. Microbiol. , 15 : 1523 – 1524 .
   PubMedGoogle Scholar
• Vos , P. , Hogers , R. , Bleeker , M. , Reijans , M. , Lee , T. , Hornes , M. , Frijters , A. , Pot , J. , Peleman , J. , Kuiper , M. and Zabeau , M. 1995 . AFLP: a new technique for DNA fingerprinting . Nucleic Acids Res. , 23 : 4407 – 4414 .
   PubMed Web of Science ®Google Scholar
• Weller , S. A. , Elphinstone , J. G. , Smith , N. C. , Boonham , N. and Stead , D. E. 2000a . Detection of Ralstonia solanacearum strains with a quantitative multiplex, real-time, fluorogenic PCR (TaqMan) assay . Appl. Environ. Microbiol. , 66 : 2853 – 2858 .
   PubMed Web of Science ®Google Scholar
• Weller , S. A. , Elphinstone , J. G. , Smith , N. C. and Stead , D. E. 2000b . Detection of Ralstonia solanacearum from potato tissue by post-enrichment TaqMan PCR . EPPO (Eur. Mediterr. Plant Prot. Organ.) Bull. , 30 : 381 – 383 .
   Google Scholar
• Yabuuchi , E. , Kosako , Y. , Yano , I. , Hotta , H. and Nishiuchi , Y. 1995 . Transfer of two Burkholderia and an Alcaligenes species to Ralstonia gen. nov.: proposal of Ralstonia pickettii (Ralston, Palleroni and Doudoroff 1973) comb. nov., Ralstonia solana cearum (Smith 1896) comb. nov., and Ralstonia eutropha (Davis 1969) comb. nov . Microbiol. Immunol. , 39 : 897 – 904 .
   PubMed Web of Science ®Google Scholar
• Yu , Q. , Alvarez , A. M. , Moore , P. H. , Zee , F. , Kim , M. S. , de Silva , A. , Hepperly , P. R. and Ming , R. 2003 . Molecular diversity of Ralstonia solanacearum isolated from ginger in Hawaii . Phytopathology , 93 : 1124 – 1130 .
   PubMed Web of Science ®Google Scholar