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Genomics/Génomique

Analysis of expressed sequence tags derived from a compatible Plasmodiophora brassicae–canola interaction

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Pages 562-574 | Accepted 15 Aug 2012, Published online: 11 Sep 2012

References

  • Adams , M.D. , Kelley , J.M. , Gocayne , J.D. , Dubnick , M. , Polymeropoulos , M.H. Xiao , H. 1991 . Links complementary DNA sequencing: expressed sequence tags and human genome project . Science , 252 : 1651 – 1656 .
  • Ando , S. , Yamada , T. , Asano , T. , Kamachi , S. , Tsushima , S. , Hagio , T. and Tabei , Y. 2006 . Molecular cloning of PbSTKL1 gene from Plasmodiophora brassicae expressed during club root development . J. Phytopathol. , 154 : 185 – 189 .
  • Bittner-Eddy , P.D. , Rehmany , A.P. , Birch , P. and Beynon , J.L. 2003 . Use of suppression subtractive hybridization to identify downy mildew genes expressed during infection of Arabidopsis thaliana . Mol. Plant Pathol. , 4 : 501 – 507 .
  • Brenner , S. , Johnson , M. , Bridgham , J. , Golda , G. , Lloyd , D.H. Johnson , D. 2000 . Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays . Nat. Biotechnol. , 18 : 630 – 634 .
  • Brodmann , D. , Schuller , A. , Ludwig-Müller , J. , Aeschbacher , R.A. , Wiemken , A. , Boller , T. and Wingler , A. 2002 . Induction of trehalase in Arabidopsis plants infected with the trehalose-producing pathogen Plasmodiophora brassicae . Mol. Plant Microbe Interact. , 15 : 693 – 700 .
  • Bryngelsson , T. , Gustafsson , M. , Gréen , B. and Lind , C. 1988 . Uptake of host DNA by the parasitic fungus Plasmodiophora brassicae . Physiol. Mol. Plant Pathol. , 33 : 163 – 171 .
  • Bulman , S. , Siemens , J. , Ridgway , H.J. , Eady , C. and Conner , A.J. 2006 . Identification of genes from the obligate intracellular plant pathogen, Plasmodiophora brassicae . FEMS Microbiol. Lett. , 264 : 198 – 204 .
  • Burki , F. , Kudryavtsev , A. , Matz , M.V. , Aglyamova , G.V. , Bulman , S. , Fiers , M. , Keeling , P.J. and Pawlowski , J. 2010 . Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists . BMC Evol. Biol. , 10 : 377
  • Cao , T. , Srivastava , S. , Rahman , M.H. , Kav , N.N.V. , Hotte , N. , Deyholos , M.K. and Strelkov , S.E. 2008 . Proteome-level changes in the roots of Brassica napus as a result of Plasmodiophora brassicae infection . Plant Sci. , 174 : 97 – 115 .
  • Conesa , A. , Gotz , S. , Garcia-Gomez , J.M. , Terol , J. , Talon , M. and Robles , M. 2005 . Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research . Bioinformatics , 21 : 3674 – 3676 .
  • Devos , S. , Laukens , K. , Deckers , P. , van der Straeten , D. , Beeckman , T. Inze , D. 2006 . A hormone and proteome approach to picturing the initial metabolic events during Plasmodiophora brassicae infection on Arabidopsis . Mol. Plant Microbe Interact. , 19 : 1431 – 1443 .
  • Diatchenko , L. , Lau , Y.F.C. and Campbell , A.P. 1996 . Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries . Proc. Natl. Acad. Sci. USA , 93 : 6025 – 6030 .
  • Feng , J. , Hwang , R. , Hwang , S.F. , Strelkov , S.E. , Gossen , B.D. , Zhou , Q. and Peng , G. 2010 . Molecular characterization of a serine protease Pro1 from Plasmodiophora brassicae that stimulates resting spore germination . Mol. Plant. Pathol. , 11 : 503 – 512 .
  • Feng , J. , Hwang , S.F. and Strelkov , S.E. 2012a . Studies into primary and secondary infection processes by Plasmodiophora brassicae on canola . Plant Pathol , in press, DOI: 10.1111/j.1365–3059.2012.02612.x
  • Feng , J. , Xiao , Q. , Hwang , S.F. , Strelkov , S.E. and Gossen , B.D. 2012b . Infection of canola by secondary zoospores of Plasmodiophora brassicae produced on a nonhost . Eur. J. Plant Pathol. , 132 : 309 – 315 .
  • Graf , H. , Fähling , M. and Siemens , J. 2004 . Chromosome polymorphism of the obligate biotrophic parasite Plasmodiophora brassicae . J. Phytopathol. , 152 : 86 – 91 .
  • Hegedus , D. , Yu , M. , Baldwin , D. , Gruber , M. , Sharpe , A. , Parkin , I. , Whitwill , S. and Lydiate , D. 2003 . Molecular characterization of Brassica napus NAC domain transcriptional activators induced in response to biotic and abiotic stress . Plant Mol. Biol. , 53 : 383 – 397 .
  • Huang , X. , Li , Y. , Niu , Q. and Zhang , K. 2007 . Suppression subtractive hybridization (SSH) and its modifications on microbiological research . Appl. Microbiol. Biotechnol. , 76 : 753 – 760 .
  • Hwang , S.F. , Strelkov , S.E. , Feng , J. , Gossen , B.D. and Howard , R.J. 2012 . Plasmodiophora brassicae: a review of an emerging pathogen of the Canadian canola (Brassica napus) crop . Mol. Plant Pathol. , 13 : 105 – 113 .
  • Ito , S. , Ichinose , H. , Yanagi , C. , Tanaka , S. , Kameya-Iwaki , M. and Kishi , F. 1999 . Identification of an in planta-induced mRNA of Plasmodiophora brassicae . J. Phytopathol. , 147 : 79 – 82 .
  • Kageyama , K. and Asano , T. 2009 . Life cycle of Plasmodiophora brassicae . J. Plant Growth Regul. , 28 : 203 – 211 .
  • Ozsolak , F. and Milos , P.M. 2011 . RNA sequencing: advances, challenges and opportunities . Nat. Rev. Genet. , 12 : 87 – 98 .
  • Portal , O. , Izquierdo , Y. , De Vleesschauwer , D. , Sánchez-Rodríguez , A. , Mendoza-Rodríguez , M. , Acosta-Suárez , M. , Ocaña , B. , Jiménez , E. and Höfte , M. 2011 . Analysis of expressed sequence tags derived from a compatible Mycosphaerella fijiensis–banana interaction . Plant Cell Rep. , 30 : 913 – 928 .
  • Sambrook , J. and Russell , D.W. 2001 . Molecular Cloning: A Laboratory Manual , 3rd , Cold Spring Harbor , NY : Cold Spring Harbor Laboratory Press .
  • Schmittgen , T.D. and Livak , K.J. 2008 . Analyzing real-time PCR data by the comparative C T method . Nat. Protoc. , 3 : 1101 – 1108 .
  • Siemens , J. , Keller , I. , Sarx , J. , Kunz , S. , Schuller , A. , Nagel , W. , Schmülling , T. , Parniske , M. and Ludwig-Müller , J. 2006 . Transcriptome analysis of Arabidopsis clubroots indicate a key role for cytokinins in disease development . Mol. Plant Microbe Interact. , 19 : 480 – 494 .
  • Siemens , J. , Graf , H. , Bulman , S. , In , O. and Ludwig-Müller , J. 2009 . Monitoring expression of selected Plasmodiophora brassicae genes during clubroot development in Arabidopsis thaliana . Plant Pathol. , 58 : 130 – 136 .
  • Sundelin , T. , Jensen , D.F. and Lübeck , M. 2011 . Identification of expressed genes during infection of Chinese cabbage (Brassica rapa subsp. pekinensis) by Plasmodiophora brassicae . J. Eukaryot. Microbiol. , 58 : 310 – 314 .
  • Velculescu , V.E. , Zhang , L. , Vogelstein , B. and Kinzler , K.W. 1995 . Serial analysis of gene expression . Science , 270 : 484 – 487 .
  • Wallenhammar , A.C. 1996 . Prevalence of Plasmodiophora brassicae in a spring oilseed rape growing area in central Sweden and factors influencing soil infestation levels . Plant Pathol. , 45 : 710 – 719 .

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