Real-time PCR assay to distinguish Phytophthora ramorum lineages using the cellulose binding elicitor lectin (CBEL) locus

References

• Bilodeau GJ. 2008. Détection et génomique de Phytophthora ramorum agent causal de la mort subite du chêne (l’encre des chênes rouges) [dissertation]. Québec (QC), Canada: Université Laval.
   Google Scholar
• Bilodeau GJ, Lévesque CA, de Cock AWAM, Brière SC, Hamelin RC. 2007a. Differentiation of European and North American genotypes of Phytophthora ramorum by real-time polymerase chain reaction primer extension. Can J Plant Pathol. 29:408–420. doi:10.1080/07060660709507487
   Web of Science ®Google Scholar
• Bilodeau GJ, Lévesque CA, de Cock AWAM, Duchaine C, Brière S, Uribe P, Martin FN, Hamelin RC. 2007b. Molecular detection of Phytophthora ramorum by real-time polymerase chain reaction using TaqMan, SYBR Green, and molecular beacons. Phytopathology. 97:632–642. doi:10.1094/PHYTO-97-5-0632
   PubMed Web of Science ®Google Scholar
• Bonin A, Bellemain E, Bronken Eidesen P, Pompanon F, Brochmann C, Taberlet P. 2004. How to track and assess genotyping errors in population genetics studies. Mol Ecol. 13:3261–3273. doi:10.1111/j.1365-294X.2004.02346.x
   PubMed Web of Science ®Google Scholar
• Brasier C, Webber J. 2010. Plant pathology: sudden larch death. Nature. 466:824–825. doi:10.1038/466824a
   PubMed Web of Science ®Google Scholar
• Cooke D, Lees A. 2004. Markers, old and new, for examining Phytophthora infestans diversity. Plant Pathol. 53:692–704. doi:10.1111/j.1365-3059.2004.01104.x
   Web of Science ®Google Scholar
• Elliott M, Sumampong G, Varga A, Shamoun S, James D, Masri S, Brière S, Grünwald N. 2009. PCR-RFLP markers identify three lineages of the North American and European populations of Phytophthora ramorum. For Pathol. 39:266–278. doi:10.1111/j.1439-0329.2008.00586.x
   Web of Science ®Google Scholar
• Garbelotto M, Rizzo DM, Hayden K, Meija-Chang M, Davidson JM, Tjosvold S. 2002. Phytophthora ramorum and sudden oak death in California: III. Preliminary studies in pathogen genetics. In: Standiford R, McCreary D, editors. 5th Symposium of California Oak Woodlands. Albany (CA): Pacific Southwest Research Station, Forest Service, U.S. Department of Agriculture; p. 765–774.
   Google Scholar
• Goss EM, Carbone I, Grünwald NJ. 2009a. Ancient isolation and independent evolution of the three clonal lineages of the exotic sudden oak death pathogen Phytophthora ramorum. Mol Ecol. 18:1161–1174. doi:10.1111/j.1365-294X.2009.04089.x
   PubMed Web of Science ®Google Scholar
• Goss EM, Larsen M, Chastagner GA, Givens DR, Grünwald NJ. 2009b. Population genetic analysis infers migration pathways of Phytophthora ramorum in US nurseries. PLoS Pathog. 5. doi:10.1371/journal.ppat.1000583
   PubMed Web of Science ®Google Scholar
• Goss EM, Larsen M, Vercauteren A, Werres S, Heungens K, Grünwald NJ. 2011. Phytophthora ramorum in Canada: evidence for migration within North America and from Europe. Phytopathology. 101:166–171. doi:10.1094/PHYTO-05-10-0133
   PubMed Web of Science ®Google Scholar
• Grünwald NJ, Garbelotto M, Goss EM, Heungens K, Prospero S. 2012. Emergence of the sudden oak death pathogen Phytophthora ramorum. Trends Microbiol. 20:131–138. doi:10.1016/j.tim.2011.12.006
   PubMed Web of Science ®Google Scholar
• Grünwald NJ, Goss EM, Ivors K, Garbelotto M, Martin FN, Prospero S, Hansen E, Bonants PJM, Hamelin RC, Chastagner G, et al. 2009. Standardizing the nomenclature for clonal lineages of the sudden oak death pathogen, Phytophthora ramorum. Phytopathology. 99:792–795.
   PubMed Web of Science ®Google Scholar
• Grünwald NJ, Goss EM, Press CM. 2008. Phytophthora ramorum: a pathogen with a remarkably wide host range causing sudden oak death on oaks and ramorum blight on woody ornamentals. Mol Plant Pathol. 9:729–740. doi:10.1111/j.1364-3703.2008.00500.x
   PubMed Web of Science ®Google Scholar
• Guichoux E, Lagache L, Wagner S, Chaumeil P, Léger P, Lepais O, Lepoittevin C, Malausa T, Revardel E, Salin F, Petit, R.J. 2011. Current trends in microsatellite genotyping. Mol Ecol Resour. 11:591–611. doi:10.1111/j.1755-0998.2011.03014.x
   PubMed Web of Science ®Google Scholar
• Ivors K, Garbelotto M, Vries I, Ruyter-Spira C, Hekkert B, Rosenzweig N, Bonants P. 2006. Microsatellite markers identify three lineages of Phytophthora ramorum in US nurseries, yet single lineages in US forest and European nursery populations. Mol Ecol. 15:1493–1505. doi:10.1111/j.1365-294X.2006.02864.x
   PubMed Web of Science ®Google Scholar
• Ivors KL, Hayden KJ, Bonants PJ, Rizzo DM, Garbelotto M. 2004. AFLP and phylogenetic analyses of North American and European populations of Phytophthora ramorum. Mycol Res. 108:378–392. doi:10.1017/S0953756204009827
   PubMed Web of Science ®Google Scholar
• Kroon LPNM, Verstappen ECP, Kox LFF, Flier WG, Bonants PJM. 2004. A rapid diagnostic test to distinguish between American and European populations of Phytophthora ramorum. Phytopathology. 94:613–620. doi:10.1094/PHYTO.2004.94.6.613
   PubMed Web of Science ®Google Scholar
• Martin FN. 2008. Mitochondrial haplotype determination in the oomycete plant pathogen Phytophthora ramorum. Curr Genet. 54:23–34. doi:10.1007/s00294-008-0196-8
   PubMed Web of Science ®Google Scholar
• Martin FN, Bensasson D, Tyler BM, Boore JL. 2007. Mitochondrial genome sequences and comparative genomics of Phytophthora ramorum and P. sojae. Curr Genet. 51:285–296. doi:10.1007/s00294-007-0121-6
   PubMed Web of Science ®Google Scholar
• Martin FN, Coffey MD, Zeller K, Hamelin RC, Tooley P, Garbelotto M, Hughes KJD, Kubisiak T, Bilodeau GJ, Levy L, et al. 2009. Evaluation of molecular markers for Phytophthora ramorum detection and identification: testing for specificity using a standardized library of isolates. Phytopathology. 99:390–403. doi:10.1094/PHYTO-99-4-0390
   PubMed Web of Science ®Google Scholar
• Martin FN, Gloria Abad Z, Balci Y, Ivors K. 2012. Identification and detection of Phytophthora: reviewing our progress, identifying our needs. Plant Dis. 96:1080–1103. doi:10.1094/PDIS-12-11-1036-FE
   PubMed Web of Science ®Google Scholar
• Mascheretti S, Croucher P, Kozanitas M, Baker L, Garbelotto M. 2009. Genetic epidemiology of the sudden oak death pathogen Phytophthora ramorum in California. Mol Ecol. 18:4577–4590. doi:10.1111/j.1365-294X.2009.04379.x
   PubMed Web of Science ®Google Scholar
• Mascheretti S, Croucher P, Vettraino A, Prospero S, Garbelotto M. 2008. Reconstruction of the sudden oak death epidemic in California through microsatellite analysis of the pathogen Phytophthora ramorum. Mol Ecol. 17:2755–2768. doi:10.1111/j.1365-294X.2008.03773.x
   PubMed Web of Science ®Google Scholar
• Miller PM. 1955. V-8 juice agar as a general-purpose medium for fungi and bacteria. Phytopathology. 45:461–462.
   Web of Science ®Google Scholar
• Möller E, Bahnweg G, Sandermann H, Geiger H. 1992. A simple and efficient protocol for isolation of high molecular weight DNA from filamentous fungi, fruit bodies, and infected plant tissues. Nucleic Acids Res. 20:6115–6116. doi:10.1093/nar/20.22.6115
   PubMed Web of Science ®Google Scholar
• Prospero S, Black JA, Winton LM. 2004. Isolation and characterization of microsatellite markers in Phytophthora ramorum, the causal agent of sudden oak death. Mol Ecol Notes. 4:672–674. doi:10.1111/j.1471-8286.2004.00778.x
   Web of Science ®Google Scholar
• Prospero S, Hansen E, Grünwald N, Winton L. 2007. Population dynamics of the sudden oak death pathogen Phytophthora ramorum in Oregon from 2001 to 2004. Mol Ecol. 16:2958–2973. doi:10.1111/j.1365-294X.2007.03343.x
   PubMed Web of Science ®Google Scholar
• Van Poucke K, Franceschini S, Webber JF, Vercauteren A, Turner JA, McCracken AR, Heungens K, Brasier CM. 2012. Discovery of a fourth evolutionary lineage of Phytophthora ramorum: EU2. Fungal Biol. 116:1178–1191. doi:10.1016/j.funbio.2012.09.003
   PubMed Web of Science ®Google Scholar
• Vercauteren A, De Dobbelaere I, Grünwald NJ, Bonants P, Van Bockstaele E, Maes M, Heungens K. 2010. Clonal expansion of the Belgian Phytophthora ramorum populations based on new microsatellite markers. Mol Ecol. 19:92–107. doi:10.1111/j.1365-294X.2009.04443.x
   PubMed Web of Science ®Google Scholar
• Vercauteren A, Larsen M, Goss E, Grunwald NJ, Maes M, Heungens K. 2011. Identification of new polymorphic microsatellite markers in the NA1 and NA2 lineages of Phytophthora ramorum. Mycologia. 103:1245–1249. doi:10.3852/10-420
   PubMed Web of Science ®Google Scholar
• Webber J, Mullett M, Brasier C. 2010. Dieback and mortality of plantation Japanese larch (Larix kaempferi) associated with infection by Phytophthora ramorum. New Dis Rep. 22:2044–588. 2010.
   Google Scholar
• Wiejacha K, Trzewik A, Orlikowski LB, Szkuta G, Orlikowska T. 2007. Genomic polymorphism of isolates of Phytophthora ramorum from Polish ornamental nurseries compared with other European and North American isolates. J Appl Genet. 48:413–419. doi:10.1007/BF03195242
   PubMed Web of Science ®Google Scholar