Advanced search
Publication Cover
Canadian Journal of Plant Pathology Volume 37, 2015 - Issue 1
Submit an article Journal homepage
770
Views
29
CrossRef citations to date
0
Altmetric
Virology/Virologie

Detection and genetic diversity of Grapevine red blotch-associated virus isolates in table grape accessions in the National Clonal Germplasm Repository in California

Maher Al RwahnihDepartment of Plant Pathology, University of California, One Shields Avenue, Davis, CA95616, USA
,
Adib RowhaniDepartment of Plant Pathology, University of California, One Shields Avenue, Davis, CA95616, USA
,
Deborah A. GolinoDepartment of Plant Pathology, University of California, One Shields Avenue, Davis, CA95616, USA
,
Christina M. IslasDepartment of Plant Pathology, University of California, One Shields Avenue, Davis, CA95616, USA
,
John E. PreeceUSDA-ARS, National Clonal Germplasm Repository, University of California, One Shields Avenue, Davis, CA95616, USA
&
Mysore R. SudarshanaUSDA-ARS, Department of Plant Pathology, University of California, One Shields Avenue, Davis, CA95616, USACorrespondence[email protected]
Pages 130-135 | Accepted 14 Dec 2014, Published online: 21 Jan 2015

References

  • Al Rwahnih M, Daubert S, Golino D, Rowhani A. 2009. Deep sequencing analysis of RNAs from a grapevine showing Syrah decline symptoms reveals a multiple virus infection that includes a novel virus. Virology. 387:395–401. doi:10.1016/j.virol.2009.02.028
  • Al Rwahnih M, Dave A, Anderson MM, Rowhani A, Uyemoto JK, Sudarshana MR. 2013. Association of a DNA virus with grapevines affected by red blotch disease in California. Phytopathology. 103:1069–1076. doi:10.1094/PHYTO-10-12-0253-R
  • Al Rwahnih M, Osman F, Sudarshana M, Uyemoto J, Minafra A, Saldarelli P, Martelli G, Rowhani A. 2012a. Detection of Grapevine leafroll-associated virus 7 using real time qRT-PCR and conventional RT PCR. J Virol Methods. 179:383–389. doi:10.1016/j.jviromet.2011.11.026
  • Al Rwahnih M, Sudarshana MR, Uyemoto JK, Rowhani A. 2012b. Complete genome sequence of a novel vitivirus isolated from grapevine. J Virol. 86:9545. doi:10.1128/JVI.01444-12
  • Chooi KM, Cohen D, Pearson MN. 2013. Molecular characterisation of two divergent variants of grapevine leafroll-associated virus 3 in New Zealand. Arch Virol. 158:1597–1602. doi:10.1007/s00705-013-1631-9
  • Espach Y, Maree HJ, Burger JT. 2012. Complete genome of a novel endornavirus assembled from next-generation sequence data. J Virol. 86:13142. doi:10.1128/JVI.02538-12
  • Krenz B, Thompson JR, Fuchs M, Perry KL. 2012. Complete genome sequence of a new circular DNA virus from grapevine. J Virol. 86:7715. doi:10.1128/JVI.00943-12
  • Krenz B, Thompson JR, McLane H, Fuchs M, Perry KL. 2014. Grapevine red blotch-associated virus is widespread in the United States. Phytopathology. 104:1232–1240. doi:10.1094/PHYTO-02-14-0053-R
  • Martelli GP. 2014. Grapevine-infecting viruses. J Plant Pathol. 96:136.
  • Muhire B, Martin DP, Brown JK, Navas-Castillo J, Moriones E, Zerbini FM, Rivera-Bustamante R, Malathi VG, Briddon RW, Varsani A. 2013. A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae). Arch Virol. 158:1411–1424. doi:10.1007/s00705-012-1601-7
  • Osman F, Hodzicb E, Omanska-Klusekb A, Olinekab T, Rowhani A. 2013. Development and validation of a multiplex quantitative PCR assay for the rapid detection of Grapevine virus A, B and D. J Virol Methods. 194:138–145. doi:10.1016/j.jviromet.2013.07.046
  • Osman F, Leutenegger C, Golino D, Rowhani A. 2007. Real-time RT-PCR (TaqMan®) assays for the detection of Grapevine leafroll associated viruses 1-5 and 9. J Virol Methods. 141:22–29. doi:10.1016/j.jviromet.2006.11.035
  • Poojari S, Alabi OJ, Fofanov VY, Naidu RA. 2013. A leafhopper-transmissible DNA virus with novel evolutionary lineage in the family Geminiviridae implicated in grapevine redleaf disease by next-generation sequencing. PLoS One. 8:e64194. doi:10.1371/journal.pone.0064194
  • Rowhani A, Uyemoto JK, Golino DA, Martelli GP. 2005. Pathogen testing and certification of Vitis and Prunus species. Annu Rev Phytopathol. 43:261–278. doi:10.1146/annurev.phyto.43.040204.135919
  • Sánchez-Campos S, Martínez-Ayala A, Márquez-Martín B, Aragón-Caballero L, Navas-Castillo J, Moriones E. 2013. Fulfilling Koch’s postulates confirms the monopartite nature of tomato leaf deformation virus: a begomovirus native to the New World. Virus Res. 173:286–293. doi:10.1016/j.virusres.2013.02.002
  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731–2739. doi:10.1093/molbev/msr121
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Acids Res. 25:4876–4882. doi:10.1093/nar/25.24.4876
  • Zhang Y, Singh K, Kaur R, Qiu W. 2011. Association of a novel DNA virus with the grapevine vein clearing and vine decline syndrome. Phytopathology. 101:1081–1090. doi:10.1094/PHYTO-02-11-0034

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Order Reprints Request Corporate Permissions

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

Request Academic Permissions

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.