References
- Aveskamp MM, de Gruyter J, Woudenberg JHC, Verkley GJM, Crous PW. 2010. Highlights of the Didymellaceae: a polyphasic approach to characterise Phoma and related pleosporalean genera. Stud Mycol. 65:1–60.
- Aveskamp MM, Verkley GJM, de Gruyter J, Murace MA, Perelló A, Woudenberg JHC, Groenewald JZ, Crous PW. 2009. DNA phylogeny reveals polyphyly of Phoma section, Peyronellaea and multiple taxonomic novelties. Mycologia. 101:363–382.
- Bardas GA, Tziros GT, Tzavella-Klonari K. 2008. First report of Ascochyta leaf spot caused by Phoma exigua var. exigua on common bean in Greece. Plant Dis. 92:653.
- Boerema GH, de Gruyter J, Noordeloos ME, Hamers MEC. 2004. Phoma identification manual: differentiation of specific and infra-specific taxa in culture. Oxon (UK): Wellingford.
- Carbone I, Kohn LM. 1999. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia. 91:553–556.
- Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucl Acids Res. 32:1792–1797.
- Groenewald JZ, Nakashima C, Nishikawa J, Shin H-D, Park J-H, Jama AN, Groenewald M, Braun U, Crous PW. 2013. Species concepts in Cercospora: spotting the weeds among the roses. Stud Mycol. 75:115–170.
- Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28:1647–1649.
- Kövics GJ, Sándor E, Rai MK, Irinyi L. 2014. Phoma-like fungi on soybeans. Crit Rev Microbiol. 40:49–62.
- R Core Team. 2014. R: a language and environment for statistical computing. Vienna (Austria): R Foundation for Statistical Computing.
- Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19:1572–1574.
- Vaghefi N, Pethybridge SJ, Ford R, Nicolas ME, Crous PW, Taylor PWJ. 2012. Stagonosporopsis spp. associated with ray blight disease of Asteraceae. Aust Plant Pathol. 41:675–686.
- White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Spinsky TJ, White TJ, editors. PCR protocols: a guide to methods and applications. New York (NY): Academic Press; p. 315–322.
- Woudenberg JHC, Aveskamp MM, de Gruyter J, Spiers AG, Crous PW. 2009. Multiple Didymella teleomorphs are linked to the Phoma clematidina morphotype. Persoonia. 22:56–62.