Comparison of RNA extraction methods for RT-PCR detection of Coconut cadang-cadang viroid variant in orange spotting oil palm leaves

References

• Abas R, Kamarudin MF, Borhan AAN, Simeh MA. 2011. A study on the Malaysian oil palm biomass store supply and perception of palm oil millers. Oil Palm Ind Econ J. 11:28–41.
   Google Scholar
• Avina-padilla K, Martinez De La Vega O, Rivera-Bustamante R, Martinez-Soriano JP, Owens RA, Hammond RW, Vielle-Calzadaet J-P. 2015. In silico prediction and validation of potential gene targets for pospiviroid-derived small RNAs during tomato infection. Gene. 564:197–205.
   PubMed Web of Science ®Google Scholar
• Boubourkas IN, Fukuta S, Kyriakopoulou PE. 2009. Sensitive and rapid detection of Peach latent mosaic viroid by the reverse transcription loop-mediated isothermal amplification. J Virol. 160:63–68.
   Google Scholar
• Desjardins PR, Drake RJ. 1983. Avocado sunblotch viroid: importance of pollen and mechanical transmission in control programs. West Aust Nut Tree Crop Assoc Yearbook. 8:5–12.
   Google Scholar
• Forde SCM, Leyritz MJP. 1968. A study of confluent orange spotting of the oil palm in Nigeria. J Nigerian Inst Oil Palm Res. 4:371–380.
   Google Scholar
• Gozmanova M, Denti MA, Minkov IN, Tsagris M, Tabler M. 2003. Characterization of the RNA motif responsible for the specific interaction of Potato spindle tuber viroid RNA (PSTVd) and the tomato protein Virp1. Nucleic Acids Res. 31:5534–5543.
   PubMed Web of Science ®Google Scholar
• Hadidi A, Candresse T. 2003. Polymerase chain reaction. In: Hadidi A, Flores R, Randles JW, Semancik J, editors. Viroids. Collingwood, Australia: CSIRO; p. 115–122.
   Google Scholar
• Hammond RW, Owens RA 2006. Viroids: new and continuing risks for horticultural and agricultural crops. Online APSnet Features. doi: 10.1094/APSnetFeature-2006-1106.
   Google Scholar
• Hanold D, Randles JW. 1991. Detection of Coconut cadang-cadang viroid -like sequence in oil and coconut palm and other monocotyledons in the south-west Pacific. Ann Appl Biol. 118:139–151.
   Web of Science ®Google Scholar
• Harris PS, Browning IA. 1980. The effects of temperature and light on the symptom expression and viroid concentration in tomato of a severe strain of Potato spindle tuber viroid. Potato Res. 23:85–93.
   Web of Science ®Google Scholar
• Joseph H 2012. Characterization and pathogenicity of Coconut cadang-cadang viroid in oil palm (Elaeis guineensis Jacq.) seedling [dissertation]. Malaysia: The University of Putra Malaysia.
   Google Scholar
• Liao Z, Chen M, Guo L, Gong Y, Tang F, Sun X, Tang K. 2004. Rapid isolation of high-quality total RNA from taxus and gingko. Prep Biochem Biotech. 34:209–214.
   PubMed Web of Science ®Google Scholar
• Maniataki E, Martínez De Alba AE, Sägesser R, Tabler M, Tsagris M. 2003. Viroid RNA systemic spread may depend on the interaction of a 71-nucleotide bulged hairpin with the host protein VirP1. Rna. 9:346–354.
   PubMed Web of Science ®Google Scholar
• Martinez De Alba AE, Sägesser R, Tabler M, Tsagris M. 2003. A bromodomain-containing protein from tomato specifically binds Potato spindle tuber viroid RNA in vitro and in vivo. J Virol. 77:9685–9694.
   PubMed Web of Science ®Google Scholar
• Murphy DJ. 2014. The future of oil palm as a major global crop: opportunities and challenges. J Oil Palm Res. 26:1–24.
   Web of Science ®Google Scholar
• Papayiannis LC. 2014. Diagnostic real-time PCR for the simultaneous detection of Citrus exocortis viroid and Hop stunt viroid. J Virol Methods. 196:93–99.
   PubMed Web of Science ®Google Scholar
• Randles JW. 1998. CCCVd related sequence in other species than coconut is subtopic In report on ACIAR-funded research on viruses on viroids and viruses of coconut palm and other tropical monocotyledons. This report is a monograph published by Australian Government (Australian Centre for international agricultural research) The monograph can be accessed at: http://aciar.gov.au/publication/mn045.
   Google Scholar
• Schumacher J, Meyer N, Riesner D, Weidemann HL. 1986. Diagnostic procedure for detection of viroids and viruses with circular RNAs by “Return”- Gel Electrophoresis. J Phytopathol. 115:332–343.
   Web of Science ®Google Scholar
• Tsutsumi N, Yanagisawa H, Fujiwara Y, Ohara T. 2010. Detection of potato spindle tuber viroid by reverse transcription loop-mediated isothermal amplification. Res Bull Plant Prot Jpn. 46:61–67.
   Google Scholar
• Umana R, Pritsch CR, Arbiza J, Rivas F, Pagliano G. 2013. Evaluation of four viroid RNA extraction methods for the molecular diagnosis of CEVd in citrus lemon using RT-PCR, dot blot and northern blot. Biotechnol Appl. 30:131–136.
   Google Scholar
• Vadamalai G 2005. An investigation of oil palm orange spotting disorder [dissertation]. Australia: The University of Adelaide.
   Google Scholar
• Vadamalai G, Hanold D, Rezaian MA, Randles JW. 2006. Variants of Coconut cadang-cadang viroid isolated from an African oil palm (Elaeis guineensis Jacq.) in Malaysia. Arch Virol. 151:1447–1456.
   PubMed Web of Science ®Google Scholar
• Wijerathna YMANM. 2012. Advances of basic molecular biology techniques: potential to apply in plant viroid detection in Sri Lanka. E Sci J Plant Pathol. 01:88–93.
   Google Scholar
• Wu YH, Cheong LC, Meon S, Lau WH, Kong LL, Joseph H, Vadamalai G. 2013. Characterization of Coconut cadang-cadang viroid variants from oil palm affected by orange spotting disease in Malaysia. Arch Virol. 158:1407–1410.
   PubMed Web of Science ®Google Scholar
• Zeng Y, Yang T. 2002. RNA isolation from highly viscous samples rich in polyphenols and polysaccharides. Plant Mol Biol Rep. 20:417a–417e.
   Google Scholar