Multigene characterization of a ‘Candidatus Phytoplasma australasia’ strain associated with Roystonea regia in Oman

References

• Al-Subhi AM, Hogenhout SA, Al-Yahyai RA, Al-Sadi AM. 2018. Detection, identification, and molecular characterization of the 16SrII-D phytoplasmas infecting vegetable and field crops in Oman. Plant Dis. 102:576–588. doi:10.1094/PDIS-07-17-0935-RE.
   PubMed Web of Science ®Google Scholar
• Bertaccini A, Duduk B, Paltrinieri S, Contaldo N. 2014. Phytoplasmas and phytoplasma diseases: a severe threat to agriculture. Am J Plant Sci. 5:1763–1788. doi:10.4236/ajps.2014.512191.
   Google Scholar
• Bertaccini A, Lee IM. 2018. Phytoplasmas: an update. In: Rao GP, Bertaccini A, Fiore N, Liefting LW, editors. Phytoplasmas: plant pathogenic bacteria - I: characterisation and epidemiology of phytoplasma - associated diseases. Singapore: Springer; p. 1–29.
   Google Scholar
• Broschat TK. 2018. Roystonea regia: royal palm. Florida: University of Florida.
   Google Scholar
• Caglayan K, Gazel M, Škorić D. 2019. Transmission of phytoplasmas by agronomic practices. In: Bertaccini A, Weintraub PG, Rao GP, Mori N, editors. Phytoplasmas: plant pathogenic bacteria - II: transmission and management of phytoplasma - associated diseases. Singapore: Springer; p. 149–163.
   Google Scholar
• Calari A, Paltrinieri S, Contaldo N, Sakalieva D, Mori N, Duduk B, Bertaccini A. 2011. Molecular evidence of phytoplasmas in winter oilseed rape, tomato and corn seedlings. Bull Insectol. 64:S157–S158.
   Web of Science ®Google Scholar
• Dan Edward VV, Eastwell KC. 2019. Multilocus characterization, gene expression analysis of putative immunodominant protein coding regions, and development of recombinase polymerase amplification assay for detection of ‘Candidatus Phytoplasma pruni’ in Prunus avium. Phytopathology. 109:983–992. doi:10.1094/PHYTO-09-18-0326-R.
   PubMed Web of Science ®Google Scholar
• Danet JL, Balakishiyeva G, Cimerman A, Sauvion N, Marie-Jeanne V, Labonne G, Laviňa A, Batlle A, Križanac I, Škorić D, et al. 2011. Multilocus sequence analysis reveals the genetic diversity of European fruit tree phytoplasmas and supports the existence of inter-species recombination. Microbiology. 157:438–450.
   PubMed Web of Science ®Google Scholar
• Deng S, Hiruki C. 1991. Amplification of 16S rRNA genes from culturable and non-culturable mollicutes. J Microbiol Methods. 14:53–61. doi:10.1016/0167-7012(91)90007-D.
   Web of Science ®Google Scholar
• Doyle J, Doyle JL. 1990. Isolation of plant DNA from fresh tissue. Focus. 12:13–15.
   Google Scholar
• Fránová J, Přibylová J, Koloniuk I, Podrábská K, Špak J. 2016. Multigene sequence analysis of aster yellows phytoplasma associated with primrose yellows. J Phytopathol. 164:166–176. doi:10.1111/jph.12442.
   Web of Science ®Google Scholar
• Gundersen DE, Lee IM. 1996. Ultrasensitive detection of phytoplasmas by nested PCR assay using two universal primer pairs. Phytopathol Mediterr. 35:144–151.
   Google Scholar
• Harrison NA, Davis RE, Helmick EE. 2013. DNA extraction from arborescent monocots and how to deal with other challenging hosts. Methods Mol Biol. 938:147–58. doi: 10.1007/978-1-62703-089-2_13.
   Google Scholar
• IRPCM TIPSWT-PTG. 2004. ‘Candidatus Phytoplasma’, a taxon for the wall-less, non-helical prokaryotes that colonize plant phloem and insects. Int J Syst Evol Microbiol. 54:1243–1255. doi:10.1099/ijs.0.02854-0.
   PubMed Web of Science ®Google Scholar
• Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28:1647–1649. doi:10.1093/bioinformatics/bts199.
   PubMed Web of Science ®Google Scholar
• Khan AJ, Azam KM, Deadman ML, Al Subhi AM. 2001. First report of Alfalfa Withes boom dsease in Oman caused by a phytoplasma of the 16Sr II group. Plant Dis. 85:1281–1287. doi:10.1094/PDIS.2001.85.12.1287A.
   Web of Science ®Google Scholar
• Khan AJ, Botti S, Al-Subhi AM, Gundersen-Rindal DE, Bertaccini A. 2002. Molecular identification of a new phytoplasma associated with alfalfa witches` broom in Oman. Phytopathology. 92:1038–1047. doi:10.1094/PHYTO.2002.92.10.1038.
   PubMed Web of Science ®Google Scholar
• Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, et al. 2007. Clustal W and Clustal X version 2.0. Bioinformatics. 23:2947–2948. doi:10.1093/bioinformatics/btm404.
   PubMed Web of Science ®Google Scholar
• Linck H, Reineke A. 2019. Rubus stunt: a review of an important phytoplasma disease in Rubus spp. J Plant Dis Prot. 126:393–399. doi:10.1007/s41348-019-00247-3.
   Web of Science ®Google Scholar
• Mishra S, Mitra S, Radhika NS, Yadav A, Rao GP. 2019. Multilocus gene-specific characterization of ‘Candidatus Phytoplasma australasia’ associated with shoot proliferation disease of small cardamom in India. 3 Biotech. 9:420. doi:10.1007/s13205-019-1944-9.
   PubMedGoogle Scholar
• Myrie WA, Harrison NA, Douglas L, Helmick E, Gore-Francis J, Oropeza C, McLaughlin WA. 2014. First report of lethal yellowing disease associated withsubgroup 16SrIV-A phytoplasmas in Antigua, WestIndies. New Dis Rep. 29:12. doi:10.5197/j.2044-0588.2014.029.012.
   Google Scholar
• Naderali N, Vadamalai G, Nejat N, Ling KL. 2015. First report of phytoplasma (16SrI) associated with yellow decline disease of royal palms [Roystonea regia (Kunth) O. F. Cook] in Malaysia. J Phytopathol. 163:133–137. doi:10.1111/jph.12262.
   Web of Science ®Google Scholar
• Narvaez M, Córdova-Lara I, Reyes-Martínez C, Puch-Hau C, Mota-Narvaez L, Collí A, Caamal G, Harrison N, Sáenz L, Oropeza C. 2016. Occurrence of 16SrIV subgroup A phytoplasmas in Roystonea regia and Acrocomia mexicana palms with lethal yellowing-like syndromes in Yucatán, Mexico. J Phytopathol. 164:1111–1115.
   Web of Science ®Google Scholar
• Omar AF, Alsohim A, Rehan MR, Al-Jamhan KA, Pérez-López E. 2018. 16SrII phytoplasma associated with date palm and Mexican fan palm in Saudi Arabia. Asutralas Plant Dis Notes. 13:39.
   Web of Science ®Google Scholar
• Rodriguez J, Vitoreli A, Ramirez A. 2010. Association of a phytoplasma with dieback in palms in Puerto Rico confirmed by nested-PCR assays. Phytopathology. 100:S110.
   Web of Science ®Google Scholar
• Schneider B, Seemuller E, Smart CD, Kirkpatrick BC. 1995. Phylogenetic classification of plant pathogenic mycoplasmalike organisms or phytoplasmas. In: Raszin S, Tully JG, editors. Molecular and diagnostic procedures in mycoplasmology. New York: Academic Press; p. 369–380.
   Google Scholar
• Seruga Musić M, Duc Nguyen H, Cerni S, Mamula Ð, Ohshima K, Skorić D. 2014. Multilocus sequence analysis of ‘Candidatus Phytoplasma asteris’ strain and the genome analysis of Turnip mosaic virus co-infecting oilseed rape. J Appl Microbiol. 117:774–785. doi:10.1111/jam.12567.
   PubMed Web of Science ®Google Scholar
• Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol. 30:2725–2729. doi:10.1093/molbev/mst197.
   PubMed Web of Science ®Google Scholar
• Trivellone V, Ripamonti M, Angelini E, Filippin L, Rossi M, Marzachí C, Galetto L. 2019. Evidence suggesting interactions between immunodominant membrane protein Imp of Flavescence dorée phytoplasma and protein extracts from distantly related insect species. J Appl Microbiol. 127:1801–1813. doi:10.1111/jam.14445.
   PubMed Web of Science ®Google Scholar
• Zhang L, Song PL, Sun PP, Zhao WJ, Li ZQ, Li ZN. 2020. Molecular detection and identification of Brassica juncea phyllody and witches’ broom-associated phytoplasmas of group 16SrVI-A in Inner Mongolia, China. Eur J Plant Pathol. 156:291–298.
   Web of Science ®Google Scholar